BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0006.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_950140.1| hypothetical protein RPA4806 [Rhodopseudomonas ... 431 e-118 ref|YP_529979.1| hypothetical protein RPC_0081 [Rhodopseudomonas... 417 e-114 ref|ZP_01047696.1| hypothetical protein NB311A_13821 [Nitrobacte... 416 e-114 ref|YP_317513.1| hypothetical protein Nwi_0897 [Nitrobacter wino... 414 e-113 ref|YP_779461.1| hypothetical protein RPE_0522 [Rhodopseudomonas... 394 e-107 >ref|NP_950140.1| hypothetical protein RPA4806 [Rhodopseudomonas palustris CGA009] emb|CAE30246.1| hypothetical protein RPA4806 [Rhodopseudomonas palustris CGA009] Length = 418 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 241/412 (58%), Positives = 294/412 (71%), Gaps = 5/412 (1%) Query: 4 AKKQLRVLVSEGSSTSGREAITILGLAGHHVEVCDPSRWCLARYSRFVRKYHHCPPLRSD 63 A ++LRVL+SEG STS R+AIT+LGLAGHHVE+CDPS CL R+SRFVR H CPPLR D Sbjct: 5 AGRRLRVLLSEGGSTSARQAITMLGLAGHHVEICDPSPLCLGRFSRFVRAVHRCPPLRRD 64 Query: 64 PAGFLRFVERLLASRHFDVLLPTHEQGFLFARAAAGLASRTGLALPDFASYRAVHSKAGF 123 PAG+L FV LL R FDVLLP HEQG +FARA +A+ G+ALP + SYR +KAGF Sbjct: 65 PAGYLGFVMELLGRRGFDVLLPIHEQGLVFARAPDRIAALAGVALPSYGSYRTAVTKAGF 124 Query: 124 NRLLDRLGPAAAADPDRDLRIVTSAEELREAVRFPSVVKTSVGTASRGVWFVRDTGDLNR 183 +RLL++LG P RIVTS ELREA R P V+KTSVGTASRGVW V D L++ Sbjct: 125 SRLLEKLG-----LPQPPTRIVTSEHELREAARGPCVIKTSVGTASRGVWRVTDQAALDQ 179 Query: 184 ALYDLESADDFAGEVLAQDLVTGTVEKAQSVFCHGTLVGFHAYRQIAAGVGGGEAIKESV 243 A+Y+L +A+ FAGE+L QD + G +E AQ+VF G L+ HAYRQI G GGG + K S+ Sbjct: 180 AVYELRAAEGFAGELLVQDFIAGPIEHAQAVFDRGDLLALHAYRQIETGAGGGPSRKLSI 239 Query: 244 SRPAIRAGLETIGAHLGWHGALSVDVIMPLDSATPLLIDCNPRLVEPMNAFQSGVDLVDL 303 A+RA + IGA LGWHGALS DVI P + A PL IDCNPRLVEPM+A SG+DLVDL Sbjct: 240 RGDAVRADVAAIGAALGWHGALSFDVIRPANDARPLYIDCNPRLVEPMSAQLSGLDLVDL 299 Query: 304 LLRVSRGETPAPLAEGRAGVRTHLAMQALLGSASRDGTRRDLIRECGRIATGEGRYRGSS 363 LLR+S GE PA + GV +HL MQALLG A R G+RRD++REC R+ + Y GS+ Sbjct: 300 LLRLSLGEHPAAPKPSQDGVCSHLGMQALLGCALRSGSRRDVMRECVRLTLRQPPYAGSA 359 Query: 364 EELTPVRLDWLSAVPLAMTTALLLASPQIASSLARGGFGAHLLDRSSIRMIE 415 EELTPV D SAVPL T +LLA+P A+ LA G+G HLLD +++ I+ Sbjct: 360 EELTPVGHDGFSAVPLIATAMILLAAPGRATILAAKGWGDHLLDAAALARID 411 >ref|YP_529979.1| hypothetical protein RPC_0081 [Rhodopseudomonas palustris BisB18] gb|ABD85660.1| protein of unknown function DUF201 [Rhodopseudomonas palustris BisB18] Length = 418 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/412 (59%), Positives = 291/412 (70%), Gaps = 5/412 (1%) Query: 8 LRVLVSEGSSTSGREAITILGLAGHHVEVCDPSRWCLARYSRFVRKYHHCPPLRSDPAGF 67 LRVL+SEG STS REAIT+LGLAGHHVE+CDPS CL R+SRFV KYH CP L DPAG+ Sbjct: 11 LRVLLSEGGSTSAREAITVLGLAGHHVEICDPSPRCLGRFSRFVAKYHRCPGLGRDPAGY 70 Query: 68 LRFVERLLASRHFDVLLPTHEQGFLFARAAAGLASRTGLALPDFASYRAVHSKAGFNRLL 127 LRF+E LLA FDVLLP HEQG LFA+ A L T LALP F +YR SKAGF+RLL Sbjct: 71 LRFIEGLLAQEEFDVLLPIHEQGLLFAKVAPRLQGLTALALPSFEAYRTAISKAGFSRLL 130 Query: 128 DRLGPAAAADPDRDLRIVTSAEELREAVRFPSVVKTSVGTASRGVWFVRDTGDLNRALYD 187 D L P R+VTSAE++R R P V+KT++GTASRGVW VRD L AL + Sbjct: 131 DEL-----QLPQPSTRLVTSAEQVRAEARAPCVIKTAIGTASRGVWLVRDADQLEDALRE 185 Query: 188 LESADDFAGEVLAQDLVTGTVEKAQSVFCHGTLVGFHAYRQIAAGVGGGEAIKESVSRPA 247 L + D FA EVL Q+ + G +E AQ+VF HG L+ HA R+IA G GGG AIK+SV R Sbjct: 186 LAAIDGFADEVLLQEFIEGAIEHAQAVFAHGELLAMHAARRIAEGAGGGAAIKQSVRRDG 245 Query: 248 IRAGLETIGAHLGWHGALSVDVIMPLDSATPLLIDCNPRLVEPMNAFQSGVDLVDLLLRV 307 + A L IG L WHGALSVD I+P D A+P IDCNPRLVEPM A +G+DL++LLL+V Sbjct: 246 VWADLARIGRALEWHGALSVDYILPSDDASPRYIDCNPRLVEPMGAKLAGLDLLELLLKV 305 Query: 308 SRGETPAPLAEGRAGVRTHLAMQALLGSASRDGTRRDLIRECGRIATGEGRYRGSSEELT 367 S G+ P AE +AG+RTHLAMQALLG A G+R DL RECG + GRY S EELT Sbjct: 306 SLGQHPPAAAESQAGMRTHLAMQALLGCARDGGSRGDLFRECGDLLRRRGRYAESREELT 365 Query: 368 PVRLDWLSAVPLAMTTALLLASPQIASSLARGGFGAHLLDRSSIRMIEGEDF 419 PVR DWLSAVPL +T ALLL +P +A LA G+G HLLD ++R I+GE+ Sbjct: 366 PVRSDWLSAVPLTLTAALLLLAPSLAGPLAAKGWGDHLLDAGAVRRIDGEEI 417 >ref|ZP_01047696.1| hypothetical protein NB311A_13821 [Nitrobacter sp. Nb-311A] gb|EAQ34336.1| hypothetical protein NB311A_13821 [Nitrobacter sp. Nb-311A] Length = 444 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/411 (51%), Positives = 277/411 (67%), Gaps = 6/411 (1%) Query: 8 LRVLVSEGSSTSGREAITILGLAGHHVEVCDPSRWCLARYSRFVRKYHHCPPLRSDPAGF 67 LR+L+SEGSSTS REAIT+LG+ GHHVEVCDP+ CL R+SR VR++H CP L DP G+ Sbjct: 36 LRILLSEGSSTSAREAITVLGMQGHHVEVCDPNPCCLGRFSRLVRRFHRCPGLGIDPVGY 95 Query: 68 LRFVERLLASRHFDVLLPTHEQGFLFARAAAGLASRTGLALPDFASYRAVHSKAGFNRLL 127 + F+ +LA R FD+LLP HEQG++ ++ + + +ALP A+Y+ HSKA F+RLL Sbjct: 96 VTFLLEILARRRFDILLPIHEQGYVLSKTREAIENHVAVALPSHAAYQKAHSKASFSRLL 155 Query: 128 DRLGPAAAADPDRDLRIVTSAEELREAVRFPSVVKTSVGTASRGVWFVRDTGDLNRALYD 187 L P + + E++ FP ++K + GTASR VW V+ +L A+ + Sbjct: 156 SVLD-----LPQPRTLLFRTREDVAALDCFPLMLKAATGTASRAVWLVKKPHELAAAVEE 210 Query: 188 LESADDFAGEVLAQDLVTGTVEKAQSVFCHGTLVGFHAYRQIAAGVGGGEAIKESVSRPA 247 L FAG+++AQ+ + VE AQ+VF HG L+G HAYRQIA G GGG+A+KESV RP Sbjct: 211 LARDGAFAGDIVAQEFIDAPVEHAQAVFSHGRLLGMHAYRQIARGAGGGDAVKESVHRPL 270 Query: 248 IRAGLETIGAHLGWHGALSVDVIMPLDSATPLLIDCNPRLVEPMNAFQSGVDLVDLLLRV 307 +R L IG HL WHGALSVD + L IDCNPRLVEPMNA +G DL++LLL+V Sbjct: 271 VREHLTRIGEHLNWHGALSVDYLA-LGENDVRYIDCNPRLVEPMNALLAGHDLLNLLLQV 329 Query: 308 SRGETPAPLAEGRAGVRTHLAMQALLGSASRDGTRRDLIRECGRIATGEGRYRGSSEELT 367 +RG +P PLA RAGVRTHLA+QALLG A R +R +L+REC R+ G Y GS EELT Sbjct: 330 TRGASPEPLAPCRAGVRTHLALQALLGCAMRTRSRLELLRECRRLLMRTGIYEGSEEELT 389 Query: 368 PVRLDWLSAVPLAMTTALLLASPQIASSLARGGFGAHLLDRSSIRMIEGED 418 P+R+DW S +P + A LL P+ A LA G+G+HLL+ SIR+IEG + Sbjct: 390 PLRIDWPSVIPTVVAAAWLLIRPKAAEQLANKGWGSHLLNSESIRIIEGWN 440 >ref|YP_317513.1| hypothetical protein Nwi_0897 [Nitrobacter winogradskyi Nb-255] gb|ABA04161.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 513 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/411 (53%), Positives = 274/411 (66%), Gaps = 6/411 (1%) Query: 8 LRVLVSEGSSTSGREAITILGLAGHHVEVCDPSRWCLARYSRFVRKYHHCPPLRSDPAGF 67 LR+L+SEGSSTS REAITILG+ GHHVEVCDP C R+SRFVR++H CP L DPAG+ Sbjct: 105 LRILLSEGSSTSAREAITILGMQGHHVEVCDPDPRCFGRFSRFVRRFHRCPGLGVDPAGY 164 Query: 68 LRFVERLLASRHFDVLLPTHEQGFLFARAAAGLASRTGLALPDFASYRAVHSKAGFNRLL 127 + FV LLA R FDVLLP HEQG+ ++ + +ALP A+Y+ HSKA F+RLL Sbjct: 165 VTFVLALLARRPFDVLLPIHEQGYALSKIREAIEKHVAVALPAHAAYQQAHSKASFSRLL 224 Query: 128 DRLGPAAAADPDRDLRIVTSAEELREAVRFPSVVKTSVGTASRGVWFVRDTGDLNRALYD 187 L P +V+++E++ RFP ++K + GTASR VW VR +L + + Sbjct: 225 SGLD-----LPQPRTLLVSTSEDVLALDRFPLILKAATGTASRTVWPVRGAHELAAVVRE 279 Query: 188 LESADDFAGEVLAQDLVTGTVEKAQSVFCHGTLVGFHAYRQIAAGVGGGEAIKESVSRPA 247 L FA +++AQ+ + VE AQ+VF G L+G HAYRQIA G GGG+A+KESV RP Sbjct: 280 LARCGAFADDIVAQEFIDAPVEHAQAVFDRGRLLGMHAYRQIARGAGGGDAVKESVDRPL 339 Query: 248 IRAGLETIGAHLGWHGALSVDVIMPLDSATPLLIDCNPRLVEPMNAFQSGVDLVDLLLRV 307 +R L IG HL WHGALSVD + P + L IDCNPRLVEPMNA +G DL+ LLLRV Sbjct: 340 VREHLTRIGKHLDWHGALSVDYLTP-GANDVLYIDCNPRLVEPMNALLAGHDLLGLLLRV 398 Query: 308 SRGETPAPLAEGRAGVRTHLAMQALLGSASRDGTRRDLIRECGRIATGEGRYRGSSEELT 367 +RG +P L GRAGVRTHLA+QALLG A R +R +L+REC R+ G YRGS EELT Sbjct: 399 TRGVSPEALVPGRAGVRTHLALQALLGCAMRSRSRLELLRECRRLLMRTGVYRGSQEELT 458 Query: 368 PVRLDWLSAVPLAMTTALLLASPQIASSLARGGFGAHLLDRSSIRMIEGED 418 P+R+DW S +P ALLL P A L G+G HLL+ SIR+IEG + Sbjct: 459 PLRIDWPSVIPTVFAAALLLIRPGAAEHLVSKGWGDHLLNPESIRVIEGWN 509 >ref|YP_779461.1| hypothetical protein RPE_0522 [Rhodopseudomonas palustris BisA53] gb|ABJ04481.1| protein of unknown function DUF201 [Rhodopseudomonas palustris BisA53] Length = 414 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/417 (53%), Positives = 270/417 (64%), Gaps = 18/417 (4%) Query: 6 KQLRVLVSEGSSTSGREAITILGLAGHHVEVCDPSRWCLARYSRFVRKYHHCPPLRSDPA 65 + LRVL+SE STS REAIT+LGLAGHHVE+CDPS CL R SRFVR +H CP L DPA Sbjct: 9 QPLRVLLSEAGSTSAREAITLLGLAGHHVEICDPSPRCLGRLSRFVRAFHRCPGLGVDPA 68 Query: 66 GFLRFVERLLASRHFDVLLPTHEQGFLFARAAAGLASRTGLALPDFASYRAVHSKAGFNR 125 G+L FVE LL RHFDVLLP HEQG LFA+ LA+RTG+ALP F SYR KA F+ Sbjct: 69 GYLAFVEDLLERRHFDVLLPIHEQGLLFAKVQPRLAARTGVALPAFESYRTALDKARFSA 128 Query: 126 LLDRLGPAAAADPDRDLR-----IVTSAEELREAVRFPSVVKTSVGTASRGVWFVRDTGD 180 LLD+L +LR IVTS E+ R A P VVK ++GTASRGVW VR + Sbjct: 129 LLDQL----------ELRQPPTTIVTSIEDARTA-SLPCVVKAAIGTASRGVWIVRSAAE 177 Query: 181 LNRALYDLESADDFAGEVLAQDLVTGTVEKAQSVFCHGTLVGFHAYRQIAAGVGGGEAIK 240 + AL +L G +L Q+ V G VE AQ+VFC G L+ H YR+IA G GGG A K Sbjct: 178 RDAALRELADITPPGGAILLQEFVEGPVEHAQAVFCRGELLAIHGYRRIAEGAGGGPAQK 237 Query: 241 ESVSRPAIRAGLETIGAHLGWHGALSVDVIMPLDSATPLLIDCNPRLVEPMNAFQSGVDL 300 SV R +RA + +G HL WHGALS+D I D TP IDCNPRLVEPM+A +G DL Sbjct: 238 LSVRRDGVRADVAKLGRHLAWHGALSLDYIWSDD--TPRYIDCNPRLVEPMSAALAGTDL 295 Query: 301 VDLLLRVSRGETPAPLAEGRAGVRTHLAMQALLGSASRDGTRRDLIRECGRIATGEGRYR 360 + LLL VSRGE P R GVR+HLAMQALLG A R +RR L+ E + G Y Sbjct: 296 LGLLLLVSRGEKPPLPPASREGVRSHLAMQALLGCALRQRSRRALLGEIVAMLGRRGPYV 355 Query: 361 GSSEELTPVRLDWLSAVPLAMTTALLLASPQIASSLARGGFGAHLLDRSSIRMIEGE 417 GS EELTP+R DWL +PL T +L+A P +A L G+G HLLD +++R I+ + Sbjct: 356 GSVEELTPLRADWLGFIPLLATALILMARPGLAQRLTLKGWGDHLLDAAAVRAIDND 412