BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0002.p (418 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767644.1| hypothetical protein bll1004 [Bradyrhizobium ja... 697 0.0 ref|YP_001208671.1| putative N-acyl-D-amino-acid deacylase famil... 678 0.0 ref|YP_001236862.1| dihydroorotase [Bradyrhizobium sp. BTAi1] >g... 667 0.0 ref|YP_762196.1| amidohydrolase family protein/D-aminoacylase do... 465 e-129 ref|YP_002130980.1| N-acyl-D-aspartate/D-glutamate deacylase [Ph... 421 e-115 >ref|NP_767644.1| hypothetical protein bll1004 [Bradyrhizobium japonicum USDA 110] dbj|BAC46269.1| bll1004 [Bradyrhizobium japonicum USDA 110] Length = 572 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/393 (84%), Positives = 363/393 (92%), Gaps = 1/393 (0%) Query: 3 STPDLVIRGGTIADGKGGDLYEADVAISGGKITEVGKVSAKGTEEIDAKGKLVAPGFVDV 62 + PDLVIRGG +ADG GG+L+EADVAI+GG+I+EVGK+S KG EEIDA+GKLV PGFVDV Sbjct: 2 TNPDLVIRGGMVADGNGGELFEADVAITGGRISEVGKISGKGKEEIDARGKLVTPGFVDV 61 Query: 63 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCRPSDHTRLIQLMEGVEDIPEPVL 122 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPC+P+DHTRLIQLMEGVEDIPEPVL Sbjct: 62 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCKPADHTRLIQLMEGVEDIPEPVL 121 Query: 123 SAGIPWAWESFPDYMEWLSKRSFDMDVGAQLPHAALRVYVMGERGARRDPATPDDNKAMA 182 SAGIPWAWESFPDYM WLSKR FD+DVGAQLPHAALRVYVMGERGARRDP+T +DN AMA Sbjct: 122 SAGIPWAWESFPDYMGWLSKRDFDIDVGAQLPHAALRVYVMGERGARRDPSTVEDNAAMA 181 Query: 183 ALAGDAVRAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTAIAGAMHGVGRSVLQFVLD 242 LAG+AVR+GALGFSTSRTLNHRTSTGD+TPTLKAGEDELTAIAGAMH GRSVLQFVLD Sbjct: 182 KLAGEAVRSGALGFSTSRTLNHRTSTGDFTPTLKAGEDELTAIAGAMHREGRSVLQFVLD 241 Query: 243 QSTVHEDLPMMLRVAENTRCPISFSVAQADKAPRRWRQTMDTINEAAARGLSITTQIAAR 302 ST+ +DLPMMLRVA+ T+CPISFS+ Q DKAP+RWRQT+D IN AA RGLSIT QIAAR Sbjct: 242 LSTIDDDLPMMLRVADTTKCPISFSITQNDKAPQRWRQTLDEINAAAQRGLSITAQIAAR 301 Query: 303 PVGLLLGLELSRNPFQTHPSYREIARLPLAERLAQLRRPEVRAAILSESATATDDPLFFR 362 PVGLLLGLELSRNPFQTHPSYR IA LPL ERLA+L +PEVR AILSE+ATATDDPLFFR Sbjct: 302 PVGLLLGLELSRNPFQTHPSYRAIAHLPLKERLARLHQPEVRQAILSETATATDDPLFFR 361 Query: 363 PNYDKMYLLGNPPDYEQPPENALGPQ-RAPGRR 394 PNYDKM+LLG+PPDYEQPPENALGPQ R GR+ Sbjct: 362 PNYDKMFLLGDPPDYEQPPENALGPQARKQGRK 394 >ref|YP_001208671.1| putative N-acyl-D-amino-acid deacylase family protein (D-aminoacylase) [Bradyrhizobium sp. ORS 278] emb|CAL80456.1| putative N-acyl-D-amino-acid deacylase family protein (D-aminoacylase) [Bradyrhizobium sp. ORS 278] Length = 572 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/393 (82%), Positives = 357/393 (90%), Gaps = 1/393 (0%) Query: 3 STPDLVIRGGTIADGKGGDLYEADVAISGGKITEVGKVSAKGTEEIDAKGKLVAPGFVDV 62 + PDLVIRGGTIADG GG+LYEADVAI+GG+I +VG+++A G EEIDA+GKLV PGFVDV Sbjct: 2 TQPDLVIRGGTIADGSGGELYEADVAITGGRIVDVGRIAASGREEIDARGKLVTPGFVDV 61 Query: 63 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCRPSDHTRLIQLMEGVEDIPEPVL 122 HTHYDGQVTWS DI+PSSQNGVTTAIMGNCGVGFAPCRP+DH RLIQLMEGVEDIPEPVL Sbjct: 62 HTHYDGQVTWSHDISPSSQNGVTTAIMGNCGVGFAPCRPADHQRLIQLMEGVEDIPEPVL 121 Query: 123 SAGIPWAWESFPDYMEWLSKRSFDMDVGAQLPHAALRVYVMGERGARRDPATPDDNKAMA 182 AGIPW WESFPDYMEWL KRSFD+D+GAQLPHAALRVYVMGERGARRDPAT DD++AMA Sbjct: 122 EAGIPWEWESFPDYMEWLGKRSFDLDIGAQLPHAALRVYVMGERGARRDPATADDSRAMA 181 Query: 183 ALAGDAVRAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTAIAGAMHGVGRSVLQFVLD 242 ALA DAV+AGALGFSTSRTLNHRTSTGDYTPTLKAGEDELT IA AMH GRSVLQFVLD Sbjct: 182 ALARDAVKAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTTIASAMHSAGRSVLQFVLD 241 Query: 243 QSTVHEDLPMMLRVAENTRCPISFSVAQADKAPRRWRQTMDTINEAAARGLSITTQIAAR 302 ST+HEDLPMMLR+A+ T+CPISFSV Q D+AP+RWRQT+ IN AAARGLS+T QIAAR Sbjct: 242 ISTIHEDLPMMLRIADATKCPISFSVTQNDRAPQRWRQTLAEINAAAARGLSVTAQIAAR 301 Query: 303 PVGLLLGLELSRNPFQTHPSYREIARLPLAERLAQLRRPEVRAAILSESATATDDPLFFR 362 PVGLLLGLELSRNP QTHPSY+ IA LPL+ER A++R P++RAAILSE A+ATDDPLFF+ Sbjct: 302 PVGLLLGLELSRNPLQTHPSYQAIAHLPLSERAARMRDPQLRAAILSEQASATDDPLFFK 361 Query: 363 PNYDKMYLLGNPPDYEQPPENALGPQ-RAPGRR 394 PNYDKMYLLG+PPDYEQPPE +LG Q RA G R Sbjct: 362 PNYDKMYLLGDPPDYEQPPERSLGAQARARGCR 394 >ref|YP_001236862.1| dihydroorotase [Bradyrhizobium sp. BTAi1] gb|ABQ32956.1| dihydroorotase [Bradyrhizobium sp. BTAi1] Length = 572 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/393 (81%), Positives = 349/393 (88%), Gaps = 1/393 (0%) Query: 3 STPDLVIRGGTIADGKGGDLYEADVAISGGKITEVGKVSAKGTEEIDAKGKLVAPGFVDV 62 + PDLVIRGGTIADG GG+L+EADVAI+ G I EVGK+ A G EEIDA+GKLV PGFVDV Sbjct: 2 TQPDLVIRGGTIADGSGGELHEADVAIANGLIVEVGKIQASGREEIDARGKLVTPGFVDV 61 Query: 63 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCRPSDHTRLIQLMEGVEDIPEPVL 122 HTHYDGQVTWS DI+PSSQNGVTTAIMGNCGVGFAPCRP+DH RLIQLMEGVEDIPEPVL Sbjct: 62 HTHYDGQVTWSHDISPSSQNGVTTAIMGNCGVGFAPCRPADHQRLIQLMEGVEDIPEPVL 121 Query: 123 SAGIPWAWESFPDYMEWLSKRSFDMDVGAQLPHAALRVYVMGERGARRDPATPDDNKAMA 182 AGIPW WESFPDYM WL +R FD+D+GAQLPHAALRVYVMGERGARRDPAT DDN+AMA Sbjct: 122 EAGIPWEWESFPDYMAWLGRREFDLDIGAQLPHAALRVYVMGERGARRDPATADDNRAMA 181 Query: 183 ALAGDAVRAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTAIAGAMHGVGRSVLQFVLD 242 LA DAV+AGALGFSTSRTLNHRTSTGDYTPTL AGEDELT IA AM GRSVLQFVLD Sbjct: 182 VLARDAVKAGALGFSTSRTLNHRTSTGDYTPTLIAGEDELTTIAEAMQSAGRSVLQFVLD 241 Query: 243 QSTVHEDLPMMLRVAENTRCPISFSVAQADKAPRRWRQTMDTINEAAARGLSITTQIAAR 302 ST+HEDLPMMLR+A+ TRCPISFSV Q D+AP+RWRQT+ IN AAARGLS+T QIAAR Sbjct: 242 ISTIHEDLPMMLRIADKTRCPISFSVTQNDRAPQRWRQTLAEINSAAARGLSVTAQIAAR 301 Query: 303 PVGLLLGLELSRNPFQTHPSYREIARLPLAERLAQLRRPEVRAAILSESATATDDPLFFR 362 PVGLLLGLELSRNP QTHPSY+ IA LPLAER+A++R P++RAAILSE A ATDDPLFFR Sbjct: 302 PVGLLLGLELSRNPLQTHPSYQAIAHLPLAERVARMRDPQLRAAILSEQARATDDPLFFR 361 Query: 363 PNYDKMYLLGNPPDYEQPPENALGPQ-RAPGRR 394 PNYDKMYLLG+PPDYEQPPE +LG + RA G R Sbjct: 362 PNYDKMYLLGDPPDYEQPPEQSLGARARARGCR 394 >ref|YP_762196.1| amidohydrolase family protein/D-aminoacylase domain-containing protein [Hyphomonas neptunium ATCC 15444] gb|ABI77085.1| amidohydrolase family protein/D-aminoacylase domain protein [Hyphomonas neptunium ATCC 15444] Length = 579 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/386 (60%), Positives = 288/386 (74%), Gaps = 5/386 (1%) Query: 3 STPDLVIRGGTIADGKGGDLYEADVAISGGKITEVGKVSAKGTEEIDAKGKLVAPGFVDV 62 +T DL+IRGGTI DG GG +E DVA+SGG IT+VGK++ KG EEIDA+G++V PGFVD+ Sbjct: 2 ATHDLIIRGGTIIDGSGGPSFEGDVAVSGGVITDVGKINGKGIEEIDARGQVVTPGFVDL 61 Query: 63 HTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCRPSDHTRLIQLMEGVEDIPEPVL 122 HTHYDGQV W + I+PSS +GVTT +MGNCGVGFAPC+ DH RLI+LMEGVEDIP PVL Sbjct: 62 HTHYDGQVAWGEAISPSSLHGVTTVVMGNCGVGFAPCKTEDHDRLIRLMEGVEDIPFPVL 121 Query: 123 SAGIPWAWESFPDYMEWLSKRSFDMDVGAQLPHAALRVYVMGERGARRDPATPDDNKAMA 182 S G+PWAWESFPDY+++LS R FD DV AQLPHAALRV+VMG+RGA R+ ATP+D AMA Sbjct: 122 SQGLPWAWESFPDYLDFLSTRRFDTDVCAQLPHAALRVFVMGDRGANREDATPEDIAAMA 181 Query: 183 ALAGDAVRAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTAIAGAMHGVGRSVLQFVLD 242 LA +AV AGA+GF+TSRTLNHRTS G TPTL A E ELT I + GR VLQFV D Sbjct: 182 KLAKEAVIAGAMGFTTSRTLNHRTSDGQPTPTLTASEAELTGIGMGLAEAGRGVLQFVSD 241 Query: 243 QSTVHEDLPMMLRVAENTRCPISFSVAQADKAPRRWRQTMDTINEAAARGLSITTQIAAR 302 ++ M+ R+ E T P+S S+AQ+D AP WR + I AAA G+ I Q+A R Sbjct: 242 FDDPQKEAAMLRRIVEKTGRPLSVSLAQSDVAPNGWRHLLGAIEAAAADGIPIRAQVAPR 301 Query: 303 PVGLLLGLELSRNPFQTHPSYREIARLPLAERLAQLRRPEVRAAILSESATATDDPL--- 359 PVG+LLGL+L+ NPF HP+YREIA LPL ER+A+LR PE RA +L++ A TD+P Sbjct: 302 PVGVLLGLDLTMNPFSAHPTYREIADLPLPERVARLRDPEFRARLLAD-APQTDNPFAKS 360 Query: 360 FFRPNYDKMYLLGNPPDYEQPPENAL 385 R N+ K++ L +P +YE PE+ L Sbjct: 361 MLR-NFGKIFQLTDPVNYEPGPEHTL 385 >ref|YP_002130980.1| N-acyl-D-aspartate/D-glutamate deacylase [Phenylobacterium zucineum HLK1] gb|ACG78551.1| N-acyl-D-aspartate/D-glutamate deacylase [Phenylobacterium zucineum HLK1] Length = 578 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/385 (54%), Positives = 274/385 (71%) Query: 1 MTSTPDLVIRGGTIADGKGGDLYEADVAISGGKITEVGKVSAKGTEEIDAKGKLVAPGFV 60 M DLV+RGG++ DG G + ADV + G+I VG+++A G EEIDA+G+LV PGFV Sbjct: 1 MEKAFDLVLRGGSVIDGSGKPAFVADVGVKAGRIAAVGRIAAAGAEEIDARGQLVTPGFV 60 Query: 61 DVHTHYDGQVTWSQDITPSSQNGVTTAIMGNCGVGFAPCRPSDHTRLIQLMEGVEDIPEP 120 DVHTHYDGQ TW + + PSS +GVTT +MGNCGVGFAPCRP+D R+++LMEGVEDIP P Sbjct: 61 DVHTHYDGQATWGEQMQPSSWHGVTTVVMGNCGVGFAPCRPNDRERVMRLMEGVEDIPFP 120 Query: 121 VLSAGIPWAWESFPDYMEWLSKRSFDMDVGAQLPHAALRVYVMGERGARRDPATPDDNKA 180 VL G+PW WE++PDY++ L+ R FD+D+G LPHA LRVYVMGERGA R+PATPDD A Sbjct: 121 VLDEGLPWNWETYPDYLDSLAGRRFDLDIGGLLPHAPLRVYVMGERGANREPATPDDIAA 180 Query: 181 MAALAGDAVRAGALGFSTSRTLNHRTSTGDYTPTLKAGEDELTAIAGAMHGVGRSVLQFV 240 MAA+A A+RAGALGFSTS+TLNHRT G+ TPTL A EDELT IA A+ GR V++++ Sbjct: 181 MAAIARQAIRAGALGFSTSKTLNHRTKDGESTPTLGAAEDELTGIAMALAAEGRGVIEYI 240 Query: 241 LDQSTVHEDLPMMLRVAENTRCPISFSVAQADKAPRRWRQTMDTINEAAARGLSITTQIA 300 D E+ M+ R+ E + P+SF +AQ P ++ + + EAA GL + Q A Sbjct: 241 GDYFDPAEEFAMLRRLVERSGRPLSFGLAQISDRPGDYKILLQKLTEAAKAGLPMAAQAA 300 Query: 301 ARPVGLLLGLELSRNPFQTHPSYREIARLPLAERLAQLRRPEVRAAILSESATATDDPLF 360 R +G+L GLEL+ NPF HPSY EI LP AER+A+LR P+ RA +L+E +A + Sbjct: 301 PRAIGILFGLELTLNPFLQHPSYAEIRDLPHAERVARLRDPDFRARLLAEGGSAERLRVI 360 Query: 361 FRPNYDKMYLLGNPPDYEQPPENAL 385 +D+M+LLG+ PDYEQ P+ + Sbjct: 361 ELQKWDRMFLLGDEPDYEQAPDQTV 385