BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0001.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208671.1| putative N-acyl-D-amino-acid deacylase famil...   298   1e-79
ref|NP_767644.1| hypothetical protein bll1004 [Bradyrhizobium ja...   295   1e-78
ref|YP_001236862.1| dihydroorotase [Bradyrhizobium sp. BTAi1] >g...   294   3e-78
ref|YP_002132198.1| D-amino acid aminohydrolase [Phenylobacteriu...   228   2e-58
ref|YP_004525462.1| D-amino acid aminohydrolase [Mycobacterium s...   219   1e-55

>ref|YP_001208671.1| putative N-acyl-D-amino-acid deacylase family protein
           (D-aminoacylase) [Bradyrhizobium sp. ORS 278]
 emb|CAL80456.1| putative N-acyl-D-amino-acid deacylase family protein
           (D-aminoacylase) [Bradyrhizobium sp. ORS 278]
          Length = 572

 Score =  298 bits (764), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/158 (89%), Positives = 154/158 (97%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           MLYVPFLNY+DGNLDA +EMLR+PS+VPGLSDGGAHCGIICDASFPTYLLTHWTRDR+RG
Sbjct: 411 MLYVPFLNYSDGNLDATYEMLRDPSSVPGLSDGGAHCGIICDASFPTYLLTHWTRDRTRG 470

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
           ++LSIPFVVAAQSRKTALSVGL DRG+IAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR
Sbjct: 471 DRLSIPFVVAAQSRKTALSVGLGDRGLIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 530

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQ 158
           RL+Q VDGY+ATIVSGIVT+R G+ATGARPGRLVRGA+
Sbjct: 531 RLMQDVDGYEATIVSGIVTRRHGEATGARPGRLVRGAR 568


>ref|NP_767644.1| hypothetical protein bll1004 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46269.1| bll1004 [Bradyrhizobium japonicum USDA 110]
          Length = 572

 Score =  295 bits (756), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 151/160 (94%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           MLYVPFLNYADGNLDA  EML +P +VPGLSDGGAHCGIICDASFPTYLLTHWTRDR+RG
Sbjct: 411 MLYVPFLNYADGNLDATREMLIDPQSVPGLSDGGAHCGIICDASFPTYLLTHWTRDRTRG 470

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
           EKLSIPFVVAAQSRKTALSVGL DRG+IAPG+KAD+NVIDYDRLHLHPPKVHYDLPVGGR
Sbjct: 471 EKLSIPFVVAAQSRKTALSVGLTDRGLIAPGYKADINVIDYDRLHLHPPKVHYDLPVGGR 530

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQGL 160
           RLLQ VDGY+ATIVSG+VT+R G ATG RPG+L+RGAQG+
Sbjct: 531 RLLQDVDGYEATIVSGVVTRRHGAATGRRPGKLIRGAQGV 570


>ref|YP_001236862.1| dihydroorotase [Bradyrhizobium sp. BTAi1]
 gb|ABQ32956.1| dihydroorotase [Bradyrhizobium sp. BTAi1]
          Length = 572

 Score =  294 bits (753), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/158 (87%), Positives = 152/158 (96%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           MLYVPFLNY+DGNLDA +EMLR+P +VPGLSDGGAHCGIICDASFPTYLLTHWTRDR RG
Sbjct: 411 MLYVPFLNYSDGNLDATYEMLRDPRSVPGLSDGGAHCGIICDASFPTYLLTHWTRDRKRG 470

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
           +KLSIPFVVAAQSRKTALSVGL DRG+IAPG+KADVNVIDY RLHLHPPKVHYDLPVGGR
Sbjct: 471 DKLSIPFVVAAQSRKTALSVGLDDRGLIAPGYKADVNVIDYGRLHLHPPKVHYDLPVGGR 530

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQ 158
           RL+Q+VDGYDATIVSG+VT+R G+ATGARPGRLV+GA+
Sbjct: 531 RLMQEVDGYDATIVSGVVTRRHGEATGARPGRLVKGAR 568


>ref|YP_002132198.1| D-amino acid aminohydrolase [Phenylobacterium zucineum HLK1]
 gb|ACG79769.1| D-amino acid aminohydrolase [Phenylobacterium zucineum HLK1]
          Length = 579

 Score =  228 bits (582), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 128/158 (81%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           MLY+PFLNYA GNLD  HEML  P  VPGLSDGGAH G+ICD SFPT+ +THWTRDR+RG
Sbjct: 413 MLYLPFLNYAFGNLDPAHEMLTHPDCVPGLSDGGAHVGMICDGSFPTFNITHWTRDRTRG 472

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
            KL +  ++ AQ R TA +VGL DRGV+APGF+AD+NVIDY RL LH P+V YDLP GGR
Sbjct: 473 PKLPLERMIKAQCRDTAETVGLFDRGVVAPGFRADLNVIDYGRLKLHAPQVAYDLPAGGR 532

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQ 158
           RL+Q+ DGY ATIV+G VT R+G+ TGA PGRL+RGAQ
Sbjct: 533 RLIQRADGYVATIVAGEVTYRDGEPTGALPGRLLRGAQ 570


>ref|YP_004525462.1| D-amino acid aminohydrolase [Mycobacterium sp. JDM601]
 gb|AEF38208.1| D-amino acid aminohydrolase [Mycobacterium sp. JDM601]
          Length = 608

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 121/158 (76%)

Query: 1   MLYVPFLNYADGNLDAVHEMLREPSAVPGLSDGGAHCGIICDASFPTYLLTHWTRDRSRG 60
           ML +PF NYADGN DA+ EML  P+ V GLSDGGAHCG+ICDAS+PTYLLTHW RDR RG
Sbjct: 451 MLMLPFFNYADGNHDAIREMLTHPAGVLGLSDGGAHCGMICDASYPTYLLTHWARDRHRG 510

Query: 61  EKLSIPFVVAAQSRKTALSVGLHDRGVIAPGFKADVNVIDYDRLHLHPPKVHYDLPVGGR 120
           +KL + +VV  Q R TA   GL DRGVI  G KAD+NVID   L LHP ++ YDLP GGR
Sbjct: 511 DKLPLEYVVRKQCRDTAQLFGLTDRGVIELGKKADINVIDMAALTLHPARMAYDLPAGGR 570

Query: 121 RLLQQVDGYDATIVSGIVTQREGKATGARPGRLVRGAQ 158
           RLLQ   GYDATIVSG VT+R G  TGARPGRLVRGA+
Sbjct: 571 RLLQGASGYDATIVSGTVTRRNGTDTGARPGRLVRGAR 608