BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0044.p         (184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08071928.1| hypothetical protein Met49242DRAFT_1315 [Meth...    70   2e-10
ref|YP_002360432.1| hypothetical protein Msil_0087 [Methylocella...    68   5e-10
ref|ZP_07028540.1| conserved hypothetical protein [Afipia sp. 1N...    67   1e-09
ref|YP_002360927.1| hypothetical protein Msil_0593 [Methylocella...    59   2e-07
ref|XP_002447610.1| hypothetical protein SORBIDRAFT_06g007325 [S...    37   1.8  

>ref|ZP_08071928.1| hypothetical protein Met49242DRAFT_1315 [Methylocystis sp. ATCC
           49242]
 gb|EFY00685.1| hypothetical protein Met49242DRAFT_1315 [Methylocystis sp. ATCC
           49242]
          Length = 125

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 59  AVLLMLTTVHAATEECPAKSTQMGDIIAELQKAPSCNRAMKIFEACEYGASGDVQFGTVV 118
           A++ +L    A   +C   S  +    A+++ A +C  A KIF +C +G++ D+Q G +V
Sbjct: 7   ALIFILLATSAGAVDC---SMDLEAEEAKVRAARTCGEAHKIFVSCLWGSTADIQRGAMV 63

Query: 119 EKRCEGDFLSGLRAPQKKAYASQLKRCDHKYDNESGTMYRS 159
           +++CE  FLS L   Q  AY  +++ C  KY  + GTMYRS
Sbjct: 64  KEKCEAVFLSALPTAQANAYRRKIEACGKKYARKDGTMYRS 104


>ref|YP_002360432.1| hypothetical protein Msil_0087 [Methylocella silvestris BL2]
 gb|ACK49070.1| hypothetical protein Msil_0087 [Methylocella silvestris BL2]
          Length = 138

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 17/116 (14%)

Query: 72  EECPAKSTQMGDIIAE------------LQKAPSCNRAMKIFEACEYGASGDVQFGTVVE 119
           E+CP     +GDI AE            L+ AP+C RA K   AC+ G+SGD     +V 
Sbjct: 23  EKCP-----VGDIAAEKAGGYANAVKAALEDAPNCERAYKALAACQLGSSGDNALSDIVR 77

Query: 120 KRCEGDFLSGLRAPQKKAYASQLKRCDHKYDNESGTMYRSFTAFCRAIVAQRYSQK 175
            +CE  FL       K+AY    +RCD   +   G+MY+ F A C+A  A+ ++++
Sbjct: 78  SKCEPLFLVRASPATKQAYKKARQRCDKIAERNEGSMYQGFAAVCQAGAARDFARQ 133


>ref|ZP_07028540.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI50530.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 139

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 60  VLLMLTTVHAA----TEECPAKSTQMGD-------IIAELQKAPSCNRAMKIFEACEYGA 108
           V+L+   + AA    TE+CP     +         + A ++ AP C RA K  E C+ G+
Sbjct: 8   VVLVAANIAAAPTLATEQCPINDAAIAQAGGYANAVEAAVKAAPDCERAYKTLEICQLGS 67

Query: 109 SGDVQFGTVVEKRCEGDFLSGLRAPQKKAYASQLKRCDHKYDNESGTMYRSFTAFCRAIV 168
           SGD     +V  +CE  FL       K AY  +L  C+       GTMY    A C+A  
Sbjct: 68  SGDNALSDIVRDKCEPLFLGKESRGVKAAYKKKLTGCERIAKQNEGTMYLGLAAVCQARA 127

Query: 169 AQRYSQKALKA 179
           A+ +++K  KA
Sbjct: 128 ARDFARKYAKA 138


>ref|YP_002360927.1| hypothetical protein Msil_0593 [Methylocella silvestris BL2]
 gb|ACK49565.1| hypothetical protein Msil_0593 [Methylocella silvestris BL2]
          Length = 166

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 57  MPAVLLML--TTVHAAT-EECPAKSTQMGDIIAELQKAPSCNRAMKIFEACEYGASGDVQ 113
           M A+L ++  +  H  T  +CP +      I    Q APSC +A +I   C    +GD +
Sbjct: 1   MAALLFLVAASLSHGQTLVKCPVEDRDPALIAQAAQDAPSCAQAYEIMNVCRSNTNGDAK 60

Query: 114 FGTVVEKRCEGDFLSGLRAPQKKAYASQLKRCDHKYDNESGTMYRSFTAFCRAIVAQRYS 173
           F  +V  +CE  F+  L  P  KAY +    C  ++         SF + C A VA  ++
Sbjct: 61  FAQIVVDKCEKIFVPALDEPTFKAYHAARDSCARRFAQRKDAAATSFQSTCEAGVAVVFA 120

Query: 174 QKA 176
            +A
Sbjct: 121 HRA 123


>ref|XP_002447610.1| hypothetical protein SORBIDRAFT_06g007325 [Sorghum bicolor]
 gb|EES11938.1| hypothetical protein SORBIDRAFT_06g007325 [Sorghum bicolor]
          Length = 720

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 65  TTVHAATEECPAKSTQMGDIIAELQKAPSCNRAMKIF---EACEYGASGDVQFGTVVEKR 121
           +TV A  ++   KS + GD+I +L+ A  C RA KI    E C +G    +  G +V +R
Sbjct: 26  STVEAYVDDIVVKSKKRGDLIQDLEIAFGCLRANKIKLNPEKCVFGVPRGMLLGYIVSQR 85