BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0043.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236418.1| 50S ribosomal protein L20 [Bradyrhizobium sp...   214   4e-54
ref|YP_779436.1| 50S ribosomal protein L20 [Rhodopseudomonas pal...   198   2e-49
ref|YP_483667.1| 50S ribosomal protein L20 [Rhodopseudomonas pal...   197   6e-49
ref|NP_945394.1| 50S ribosomal protein L20 [Rhodopseudomonas pal...   197   6e-49
ref|YP_001202355.1| 50S ribosomal protein L20 [Bradyrhizobium sp...   195   2e-48

>ref|YP_001236418.1| 50S ribosomal protein L20 [Bradyrhizobium sp. BTAi1]
 sp|A5E8L8.1|RL20_BRASB RecName: Full=50S ribosomal protein L20
 gb|ABQ32512.1| LSU ribosomal protein L20P [Bradyrhizobium sp. BTAi1]
          Length = 119

 Score =  214 bits (544), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/119 (89%), Positives = 112/119 (94%)

Query: 1   MSRVKRGVTAHAKHKKVYKAAKGYYGRRKNTIRVAKQAVEKAGQYAFCDRKRKKRTFRAL 60
           MSRVKRGVTAHAKHKKV+KAAKGYYGRRKNTIR AKQAVEKAGQYAF DRKRKKRTFRAL
Sbjct: 1   MSRVKRGVTAHAKHKKVFKAAKGYYGRRKNTIRTAKQAVEKAGQYAFRDRKRKKRTFRAL 60

Query: 61  WIQRINAAVRPFGMTYSVFINGLSKSGVVVDRKVLSDLAIHEPVAFQAIAEKAKAALAA 119
           WIQR+NAAVRPF +TYS FI+GLSKSG+ VDRKVLSDLAI+EP AFQAI EKAKAALAA
Sbjct: 61  WIQRLNAAVRPFELTYSRFIDGLSKSGITVDRKVLSDLAINEPAAFQAIVEKAKAALAA 119


>ref|YP_779436.1| 50S ribosomal protein L20 [Rhodopseudomonas palustris BisA53]
 sp|Q07UC8.1|RL20_RHOP5 RecName: Full=50S ribosomal protein L20
 gb|ABJ04456.1| LSU ribosomal protein L20P [Rhodopseudomonas palustris BisA53]
          Length = 119

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/107 (90%), Positives = 102/107 (95%)

Query: 1   MSRVKRGVTAHAKHKKVYKAAKGYYGRRKNTIRVAKQAVEKAGQYAFCDRKRKKRTFRAL 60
           M+RVKRGVTAHAKHKKVYKAAKG+ GRRKNTIR AK AV+KAGQYAF DRKRKKRTFRAL
Sbjct: 1   MARVKRGVTAHAKHKKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRAL 60

Query: 61  WIQRINAAVRPFGMTYSVFINGLSKSGVVVDRKVLSDLAIHEPVAFQ 107
           WIQRINAAVRP GMTYSVFINGL+KSGV+VDRKVLSDLAIHEPVAFQ
Sbjct: 61  WIQRINAAVRPLGMTYSVFINGLAKSGVIVDRKVLSDLAIHEPVAFQ 107


>ref|YP_483667.1| 50S ribosomal protein L20 [Rhodopseudomonas palustris HaA2]
 sp|Q2J454.1|RL20_RHOP2 RecName: Full=50S ribosomal protein L20
 gb|ABD04756.1| LSU ribosomal protein L20P [Rhodopseudomonas palustris HaA2]
          Length = 119

 Score =  197 bits (500), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/107 (90%), Positives = 101/107 (94%)

Query: 1   MSRVKRGVTAHAKHKKVYKAAKGYYGRRKNTIRVAKQAVEKAGQYAFCDRKRKKRTFRAL 60
           M+RVKRGVTAHAKHKKVYKAAKG+ GRRKNTIR AK AV+KAGQYAF DRKRKKRTFRAL
Sbjct: 1   MARVKRGVTAHAKHKKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRAL 60

Query: 61  WIQRINAAVRPFGMTYSVFINGLSKSGVVVDRKVLSDLAIHEPVAFQ 107
           WIQRINAAVRPFGMTYSVFINGLSKSG+VVDRKVLSDLAI EP AFQ
Sbjct: 61  WIQRINAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAITEPAAFQ 107


>ref|NP_945394.1| 50S ribosomal protein L20 [Rhodopseudomonas palustris CGA009]
 ref|YP_001989077.1| 50S ribosomal protein L20 [Rhodopseudomonas palustris TIE-1]
 ref|YP_004106416.1| 50S ribosomal protein L20 [Rhodopseudomonas palustris DX-1]
 sp|Q6NDR6.1|RL20_RHOPA RecName: Full=50S ribosomal protein L20; AltName: Full=RRP-L20
 sp|B3Q5X2.1|RL20_RHOPT RecName: Full=50S ribosomal protein L20
 emb|CAE25482.1| ribosomal protein L20 [Rhodopseudomonas palustris CGA009]
 gb|ACE98601.1| ribosomal protein L20 [Rhodopseudomonas palustris TIE-1]
 gb|ADU41683.1| ribosomal protein L20 [Rhodopseudomonas palustris DX-1]
          Length = 119

 Score =  197 bits (500), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query: 1   MSRVKRGVTAHAKHKKVYKAAKGYYGRRKNTIRVAKQAVEKAGQYAFCDRKRKKRTFRAL 60
           M+RVKRGVTAHAKHKKVYK AKGY GRRKNTIR AK AV+KAGQYAF DRKRKKRTFRAL
Sbjct: 1   MARVKRGVTAHAKHKKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRAL 60

Query: 61  WIQRINAAVRPFGMTYSVFINGLSKSGVVVDRKVLSDLAIHEPVAFQ 107
           WIQR+NAAVRPFGMTYSVFINGLSKSG+VVDRKVLSDLAI+EP AFQ
Sbjct: 61  WIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPAAFQ 107


>ref|YP_001202355.1| 50S ribosomal protein L20 [Bradyrhizobium sp. ORS 278]
 sp|A4YJM9.1|RL20_BRASO RecName: Full=50S ribosomal protein L20
 emb|CAL74105.1| 50S ribosomal subunit protein L20 [Bradyrhizobium sp. ORS 278]
          Length = 119

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 102/109 (93%)

Query: 1   MSRVKRGVTAHAKHKKVYKAAKGYYGRRKNTIRVAKQAVEKAGQYAFCDRKRKKRTFRAL 60
           MSRVKRGVTAHAKHKKVYKAAKG+YGRRKNTIR AK AVEKAGQYAF DRKRKKRTFRAL
Sbjct: 1   MSRVKRGVTAHAKHKKVYKAAKGFYGRRKNTIRAAKAAVEKAGQYAFRDRKRKKRTFRAL 60

Query: 61  WIQRINAAVRPFGMTYSVFINGLSKSGVVVDRKVLSDLAIHEPVAFQAI 109
           WIQR+NAAVRPF +TYS FI+GLSKSG+ VDRKVLSDLAI+EP AF+AI
Sbjct: 61  WIQRLNAAVRPFELTYSRFIDGLSKSGITVDRKVLSDLAINEPAAFEAI 109