BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0041.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001202352.1| translation initiation factor IF-3 [Bradyrhi...   268   2e-70
ref|YP_001236421.1| translation initiation factor IF-3 [Bradyrhi...   267   3e-70
ref|NP_767350.1| translation initiation factor IF-3 [Bradyrhizob...   266   8e-70
ref|YP_483688.1| translation initiation factor IF-3 [Rhodopseudo...   264   3e-69
ref|ZP_01045116.1| translation initiation factor IF-3 [Nitrobact...   261   2e-68

>ref|YP_001202352.1| translation initiation factor IF-3 [Bradyrhizobium sp. ORS 278]
 emb|CAL74102.1| Translation initiation factor IF-3 [Bradyrhizobium sp. ORS 278]
          Length = 200

 Score =  268 bits (685), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/136 (97%), Positives = 133/136 (97%)

Query: 1   VAIKMAMEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 60
           VAIKMA EAGMDLVEISPN SPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP
Sbjct: 65  VAIKMAAEAGMDLVEISPNNSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 124

Query: 61  MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAEFAKVEQ 120
           MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVK+DVA FAKVEQ
Sbjct: 125 MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKSDVAAFAKVEQ 184

Query: 121 DAKFEGRQVVMVLAPR 136
           DAKFEGRQVVMVLAPR
Sbjct: 185 DAKFEGRQVVMVLAPR 200


>ref|YP_001236421.1| translation initiation factor IF-3 [Bradyrhizobium sp. BTAi1]
 gb|ABQ32515.1| bacterial translation initiation factor 3 (bIF-3) [Bradyrhizobium
           sp. BTAi1]
          Length = 200

 Score =  267 bits (683), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/136 (97%), Positives = 133/136 (97%)

Query: 1   VAIKMAMEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 60
           VAIKMA EAGMDLVEISPN SPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP
Sbjct: 65  VAIKMAAEAGMDLVEISPNNSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 124

Query: 61  MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAEFAKVEQ 120
           MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVK+DVA FAKVEQ
Sbjct: 125 MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKSDVAAFAKVEQ 184

Query: 121 DAKFEGRQVVMVLAPR 136
           DAKFEGRQVVMVLAPR
Sbjct: 185 DAKFEGRQVVMVLAPR 200


>ref|NP_767350.1| translation initiation factor IF-3 [Bradyrhizobium japonicum USDA
           110]
 sp|Q89WH7.1|IF3_BRAJA RecName: Full=Translation initiation factor IF-3
 dbj|BAC45975.1| translation initiation factor IF-3 [Bradyrhizobium japonicum USDA
           110]
          Length = 179

 Score =  266 bits (680), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 129/136 (94%), Positives = 132/136 (97%)

Query: 1   VAIKMAMEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 60
           VAIKMA EAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARK+QK VEIKEIKLRP
Sbjct: 44  VAIKMAQEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKRQKTVEIKEIKLRP 103

Query: 61  MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAEFAKVEQ 120
           MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDK+K DVAE AKVEQ
Sbjct: 104 MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKIKTDVAELAKVEQ 163

Query: 121 DAKFEGRQVVMVLAPR 136
           DA+FEGRQVVMVLAPR
Sbjct: 164 DARFEGRQVVMVLAPR 179


>ref|YP_483688.1| translation initiation factor IF-3 [Rhodopseudomonas palustris
           HaA2]
 gb|ABD04777.1| bacterial translation initiation factor 3 (bIF-3) [Rhodopseudomonas
           palustris HaA2]
          Length = 145

 Score =  264 bits (675), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/136 (94%), Positives = 134/136 (98%)

Query: 1   VAIKMAMEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRP 60
           VAIKMAMEAGMDLVEISPN SPPVCKIMDYGK+KYSAQKKAAEARKKQK+VEIKEIKLRP
Sbjct: 10  VAIKMAMEAGMDLVEISPNVSPPVCKIMDYGKFKYSAQKKAAEARKKQKIVEIKEIKLRP 69

Query: 61  MIDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAEFAKVEQ 120
           MIDDHDYDVKM+AMQRFFEEGDKVKITLRYRGREMAHQEIGTKLL+KVKADVAE AKVEQ
Sbjct: 70  MIDDHDYDVKMKAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLEKVKADVAEIAKVEQ 129

Query: 121 DAKFEGRQVVMVLAPR 136
           DA+FEGRQVVMVLAPR
Sbjct: 130 DARFEGRQVVMVLAPR 145


>ref|ZP_01045116.1| translation initiation factor IF-3 [Nitrobacter sp. Nb-311A]
 gb|EAQ37121.1| translation initiation factor IF-3 [Nitrobacter sp. Nb-311A]
          Length = 171

 Score =  261 bits (668), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/135 (93%), Positives = 133/135 (98%)

Query: 2   AIKMAMEAGMDLVEISPNTSPPVCKIMDYGKYKYSAQKKAAEARKKQKVVEIKEIKLRPM 61
           AIKMAMEAGMDLVEI+PN+SPPVCKIMDYGKYK+ AQKKAAEARK+QK+VEIKEIKLRPM
Sbjct: 37  AIKMAMEAGMDLVEIAPNSSPPVCKIMDYGKYKFQAQKKAAEARKRQKIVEIKEIKLRPM 96

Query: 62  IDDHDYDVKMRAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAEFAKVEQD 121
           IDDHDYDVKM+AMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVA FAKVEQD
Sbjct: 97  IDDHDYDVKMKAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLDKVKADVAAFAKVEQD 156

Query: 122 AKFEGRQVVMVLAPR 136
           A+FEGRQVVMVLAPR
Sbjct: 157 ARFEGRQVVMVLAPR 171