BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0040.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202351.1| hypothetical protein BRADO0132 [Bradyrhizobi... 407 e-111 ref|NP_767351.1| hypothetical protein blr0711 [Bradyrhizobium ja... 400 e-109 ref|YP_567310.1| hypothetical protein RPD_0169 [Rhodopseudomonas... 399 e-109 ref|YP_001236422.1| hypothetical protein BBta_0220 [Bradyrhizobi... 390 e-106 ref|YP_316690.1| hypothetical protein Nwi_0070 [Nitrobacter wino... 386 e-105 >ref|YP_001202351.1| hypothetical protein BRADO0132 [Bradyrhizobium sp. ORS 278] emb|CAL74101.1| conserved hypothetical protein, putative alpha/beta hydrolase superfamily [Bradyrhizobium sp. ORS 278] Length = 261 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/261 (76%), Positives = 222/261 (85%), Gaps = 3/261 (1%) Query: 1 MSQTAASEQEPAFIEVGEGSEARRIAVRARAGGGPGLIWLGGFKSDMAGTKALALDAWAA 60 M+Q A + PAFI VG AR+IAVRAR+G PGL WLGGF SDM GTKA+AL+AWAA Sbjct: 1 MNQAAETTDLPAFITVGIAESARQIAVRARSGTAPGLFWLGGFNSDMKGTKAVALEAWAA 60 Query: 61 EHGRSCVRFDYSGHGESGGEFADGTIGRWLEESVAVFSQFCSGPQVVIGSSMGGWMALLL 120 E GR+CVRFDYSGHGESGG F DGTIGRWLEESVAVF QFC GPQVVIGSSMGGWMALLL Sbjct: 61 ERGRACVRFDYSGHGESGGRFVDGTIGRWLEESVAVFRQFCRGPQVVIGSSMGGWMALLL 120 Query: 121 AREIARRGNGKAQLAGLVLIAPAPDFTEELMWKAFSPEVRAKIEAKGMWLRPSEYGDGTP 180 ARE+++ G+A LAG+VLIAPAPDFTEELMW+ FS EVR +IE G+W+RPSEYG+ P Sbjct: 121 ARELSKH-PGEATLAGMVLIAPAPDFTEELMWRGFSLEVRREIETNGVWMRPSEYGE--P 177 Query: 181 YPITRNLIEEGRNHLLLGSKIDVGCPVRILQGAQDPDVPWKHAFALVHRLPAEDVVLTMI 240 YPITR LIE+GR+HLLLGS I+VGCPVRILQGAQDPDVPW+HAFAL RLPAEDVVLTMI Sbjct: 178 YPITRALIEDGRHHLLLGSAINVGCPVRILQGAQDPDVPWQHAFALAQRLPAEDVVLTMI 237 Query: 241 QDGDHRLSRPQDIARRASKDG 261 QDGDHRLSRPQDIAR + G Sbjct: 238 QDGDHRLSRPQDIARMLAAVG 258 >ref|NP_767351.1| hypothetical protein blr0711 [Bradyrhizobium japonicum USDA 110] dbj|BAC45976.1| blr0711 [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/250 (80%), Positives = 221/250 (88%), Gaps = 7/250 (2%) Query: 13 FIEVGEGSEARRIAVRARAGGGPGLIWLGGFKSDMAGTKALALDAWAAEHGRSCVRFDYS 72 FI+VGEG+ ARRIAVR RAG GPGL+WLGGFKSDM G+KALALDAWA +HGR+ VRFDYS Sbjct: 12 FIDVGEGASARRIAVRRRAGKGPGLVWLGGFKSDMQGSKALALDAWAGDHGRAAVRFDYS 71 Query: 73 GHGESGGEFADGTIGRWLEESVAVFSQFCSGPQVVIGSSMGGWMALLLAREIARRGNGK- 131 GHGESGG+FADGTIGRWLEESVAVF +FC GPQ++IGSSMGGWMALLLAREI +R + Sbjct: 72 GHGESGGDFADGTIGRWLEESVAVFERFCDGPQILIGSSMGGWMALLLAREIRKRQENRQ 131 Query: 132 ------AQLAGLVLIAPAPDFTEELMWKAFSPEVRAKIEAKGMWLRPSEYGDGTPYPITR 185 A LAGLVLIAPAPDFTEELMWK F V+ +IE KG+WLRPSEYGDG+PYPITR Sbjct: 132 ENQQESASLAGLVLIAPAPDFTEELMWKNFPAAVKKEIETKGVWLRPSEYGDGSPYPITR 191 Query: 186 NLIEEGRNHLLLGSKIDVGCPVRILQGAQDPDVPWKHAFALVHRLPAEDVVLTMIQDGDH 245 NLIEEGRNHL+LG ID+GCPVRILQGAQDPDVPW+HAFAL HRLPA+DVVLT+IQDGDH Sbjct: 192 NLIEEGRNHLVLGGAIDLGCPVRILQGAQDPDVPWQHAFALTHRLPADDVVLTLIQDGDH 251 Query: 246 RLSRPQDIAR 255 RLSRPQDIAR Sbjct: 252 RLSRPQDIAR 261 >ref|YP_567310.1| hypothetical protein RPD_0169 [Rhodopseudomonas palustris BisB5] gb|ABE37409.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 265 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/258 (75%), Positives = 218/258 (84%), Gaps = 5/258 (1%) Query: 1 MSQTAASEQ--EPAFIEVGEGSEARRIAVRARAGGGPGLIWLGGFKSDMAGTKALALDAW 58 M+ +AA+ + +PAFI VGEG+ RRIAVRARAG PGL WLGGF SDM GTKA+ALD W Sbjct: 1 MTNSAAAPKGSDPAFISVGEGAAERRIAVRARAGHAPGLFWLGGFNSDMTGTKAVALDGW 60 Query: 59 AAEHGRSCVRFDYSGHGESGGEFADGTIGRWLEESVAVFSQFCSGPQVVIGSSMGGWMAL 118 AAE GR+CVRFDYSGHG S G FADGTI RWLE+S+AVF +F +GPQVVIGSSMGGWMAL Sbjct: 61 AAERGRACVRFDYSGHGSSSGAFADGTISRWLEDSLAVFDRFATGPQVVIGSSMGGWMAL 120 Query: 119 LLAREIARR-GNGKAQLAGLVLIAPAPDFTEELMWKAFSPEVRAKIEAKGMWLRPSEYGD 177 LLARE+ RR G G+ +LAGLVLIAPAPDFTE LMWK FSPE+R +IE +G+W+RPS+YGD Sbjct: 121 LLARELIRRGGEGQTKLAGLVLIAPAPDFTEALMWKGFSPEIRRQIETEGVWMRPSDYGD 180 Query: 178 GTPYPITRNLIEEGRNHLLLGSKIDVGCPVRILQGAQDPDVPWKHAFALVHRLPAEDVVL 237 YPITR LIE+GRNHLLLG I VGCPVRILQG QDPDVPW HAFAL RLP EDVVL Sbjct: 181 A--YPITRALIEDGRNHLLLGGAISVGCPVRILQGKQDPDVPWTHAFALTERLPCEDVVL 238 Query: 238 TMIQDGDHRLSRPQDIAR 255 T+IQDGDHRLSRPQDIAR Sbjct: 239 TLIQDGDHRLSRPQDIAR 256 >ref|YP_001236422.1| hypothetical protein BBta_0220 [Bradyrhizobium sp. BTAi1] gb|ABQ32516.1| hypothetical protein BBta_0220 [Bradyrhizobium sp. BTAi1] Length = 261 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/261 (77%), Positives = 219/261 (83%), Gaps = 3/261 (1%) Query: 1 MSQTAASEQEPAFIEVGEGSEARRIAVRARAGGGPGLIWLGGFKSDMAGTKALALDAWAA 60 M+ S PAFI VG G ++R+IAVRAR G PGL WLGGF SDM GTKALALDAWAA Sbjct: 1 MNHAVESADLPAFIAVGAGEQSRQIAVRARTGHPPGLFWLGGFNSDMKGTKALALDAWAA 60 Query: 61 EHGRSCVRFDYSGHGESGGEFADGTIGRWLEESVAVFSQFCSGPQVVIGSSMGGWMALLL 120 E GR+CVRFDYSGHGESGG F DGTI RWLEESVAVF QFC GPQVVIGSSMGGWMALLL Sbjct: 61 ERGRACVRFDYSGHGESGGRFVDGTISRWLEESVAVFRQFCRGPQVVIGSSMGGWMALLL 120 Query: 121 AREIARRGNGKAQLAGLVLIAPAPDFTEELMWKAFSPEVRAKIEAKGMWLRPSEYGDGTP 180 ARE+ R+ +A LAGLVLIAPAPDFTEELMWK FS E+R +IEA G+W+RPSEYG+ P Sbjct: 121 ARELLRQ-PAEATLAGLVLIAPAPDFTEELMWKGFSAEIRREIEANGVWMRPSEYGE--P 177 Query: 181 YPITRNLIEEGRNHLLLGSKIDVGCPVRILQGAQDPDVPWKHAFALVHRLPAEDVVLTMI 240 YPIT+ LIE+GRNHLLLG I VGCPVRILQGAQDPDVPW+HAFAL HRLPAEDVVLTMI Sbjct: 178 YPITKVLIEDGRNHLLLGGAITVGCPVRILQGAQDPDVPWQHAFALAHRLPAEDVVLTMI 237 Query: 241 QDGDHRLSRPQDIARRASKDG 261 QDGDHRLSRPQDIAR + G Sbjct: 238 QDGDHRLSRPQDIARMLAAVG 258 >ref|YP_316690.1| hypothetical protein Nwi_0070 [Nitrobacter winogradskyi Nb-255] gb|ABA03338.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 257 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/243 (79%), Positives = 211/243 (86%), Gaps = 2/243 (0%) Query: 13 FIEVGEGSEARRIAVRARAGGGPGLIWLGGFKSDMAGTKALALDAWAAEHGRSCVRFDYS 72 FIEVG G ARRIAVRAR GG GL WLGGF+SDMAGTKALALDAWAAEHGR+CVRFDYS Sbjct: 9 FIEVGGGDAARRIAVRARRGGAAGLFWLGGFRSDMAGTKALALDAWAAEHGRACVRFDYS 68 Query: 73 GHGESGGEFADGTIGRWLEESVAVFSQFCSGPQVVIGSSMGGWMALLLAREIARRGNGKA 132 GHGESGGEF +GTI RWLEES+AVF FC GPQVVIGSSMGGW+ALLLAR +ARR + +A Sbjct: 69 GHGESGGEFTEGTISRWLEESLAVFDAFCEGPQVVIGSSMGGWIALLLARAVARRASSRA 128 Query: 133 QLAGLVLIAPAPDFTEELMWKAFSPEVRAKIEAKGMWLRPSEYGDGTPYPITRNLIEEGR 192 L+GLVLIAPAPDFTEELMWKAF PE R +E G+WLRPS+YGD PYPITR LIE+GR Sbjct: 129 TLSGLVLIAPAPDFTEELMWKAFPPEARHALETHGVWLRPSDYGD--PYPITRKLIEDGR 186 Query: 193 NHLLLGSKIDVGCPVRILQGAQDPDVPWKHAFALVHRLPAEDVVLTMIQDGDHRLSRPQD 252 NHLLLG I GCPVRILQGAQD DVPW+HAFAL RLP++DVVLTMI+DGDHRLSRPQD Sbjct: 187 NHLLLGKSISTGCPVRILQGAQDTDVPWRHAFALTERLPSDDVVLTMIRDGDHRLSRPQD 246 Query: 253 IAR 255 IAR Sbjct: 247 IAR 249