BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0039.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08627799.1| hypothetical protein CSIRO_0866 [Bradyrhizobi...   198   2e-49
ref|NP_767352.1| hypothetical protein blr0712 [Bradyrhizobium ja...   197   5e-49
ref|YP_004106631.1| hypothetical protein Rpdx1_0255 [Rhodopseudo...    88   5e-16
ref|YP_001989457.1| hypothetical protein Rpal_0421 [Rhodopseudom...    87   9e-16
ref|NP_945770.1| hypothetical protein RPA0417 [Rhodopseudomonas ...    84   6e-15

>ref|ZP_08627799.1| hypothetical protein CSIRO_0866 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP09501.1| hypothetical protein CSIRO_0866 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 156

 Score =  198 bits (503), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 96/106 (90%)

Query: 1   MIDDWFYRTATDFRWVMHDPVSDGTTLYARYTFSYRSTLPEAKGARAMFEGVAIMRLRDG 60
           MIDDWFYRTATDFRWVMHDPVSDG TLYARYTFSY STLPEAKGARAMFEGV+IM LRDG
Sbjct: 49  MIDDWFYRTATDFRWVMHDPVSDGKTLYARYTFSYTSTLPEAKGARAMFEGVSIMTLRDG 108

Query: 61  KITEYHEVANTAPAFVDLNFAPERIAKIVGKQGAELKARPEMQRHL 106
            I EYHEVANTAPAFVDLNFAPERI KI  KQGA LKAR EM+RHL
Sbjct: 109 LIVEYHEVANTAPAFVDLNFAPERIVKIAAKQGAALKARSEMRRHL 154


>ref|NP_767352.1| hypothetical protein blr0712 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45977.1| blr0712 [Bradyrhizobium japonicum USDA 110]
          Length = 160

 Score =  197 bits (501), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 98/106 (92%)

Query: 1   MIDDWFYRTATDFRWVMHDPVSDGTTLYARYTFSYRSTLPEAKGARAMFEGVAIMRLRDG 60
           MIDDWFYRTATDFRW MHDPV+DGTTLYARYTFSYRSTLPEA GARAMFEGVA+M L+ G
Sbjct: 54  MIDDWFYRTATDFRWDMHDPVTDGTTLYARYTFSYRSTLPEASGARAMFEGVAVMTLKGG 113

Query: 61  KITEYHEVANTAPAFVDLNFAPERIAKIVGKQGAELKARPEMQRHL 106
           +I  YHEVANTAPAFVDL FAPERIAKIV +QGAELKARPEM+RHL
Sbjct: 114 RIASYHEVANTAPAFVDLKFAPERIAKIVTRQGAELKARPEMKRHL 159


>ref|YP_004106631.1| hypothetical protein Rpdx1_0255 [Rhodopseudomonas palustris DX-1]
 gb|ADU41898.1| hypothetical protein Rpdx1_0255 [Rhodopseudomonas palustris DX-1]
          Length = 166

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 61/107 (57%)

Query: 1   MIDDWFYRTATDFRWVMHDPVSDGTTLYARYTFSYRSTLPEAKGARAMFEGVAIMRLRDG 60
           M+ D F+R ATD+RW M DPV +    YA    S+ ST+P+  G R + +G++   LR G
Sbjct: 52  MMQDLFHRDATDYRWEMFDPVCNHDLGYAWSLSSFTSTVPDFAGRRVVIDGMSRFVLRGG 111

Query: 61  KITEYHEVANTAPAFVDLNFAPERIAKIVGKQGAELKARPEMQRHLV 107
            I EY E  N   A   L  APER+A++ GK    L+ RPE Q +L 
Sbjct: 112 LIAEYRESVNGGVAMAQLGVAPERMARVFGKWSGWLQQRPETQDYLA 158


>ref|YP_001989457.1| hypothetical protein Rpal_0421 [Rhodopseudomonas palustris TIE-1]
 gb|ACE98981.1| protein of unknown function DUF1486 [Rhodopseudomonas palustris
           TIE-1]
          Length = 166

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 60/107 (56%)

Query: 1   MIDDWFYRTATDFRWVMHDPVSDGTTLYARYTFSYRSTLPEAKGARAMFEGVAIMRLRDG 60
           M+ D F+R A D+RW M DPV +G   YA    S+ ST+PE KG R + +G++   LR  
Sbjct: 52  MMQDLFHRDAADYRWEMFDPVCNGDLGYAWSLSSFTSTVPEFKGQRVVIDGMSRFILRGE 111

Query: 61  KITEYHEVANTAPAFVDLNFAPERIAKIVGKQGAELKARPEMQRHLV 107
            I EY E  N   A   L  APER+AK+  K    L+ RPE Q +L 
Sbjct: 112 LIAEYRESVNGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYLA 158


>ref|NP_945770.1| hypothetical protein RPA0417 [Rhodopseudomonas palustris CGA009]
 emb|CAE25861.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 166

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%)

Query: 1   MIDDWFYRTATDFRWVMHDPVSDGTTLYARYTFSYRSTLPEAKGARAMFEGVAIMRLRDG 60
           M+ D F+R A D+RW M DPV +G   YA    S+ ST+P+ +G R + +G++   LR  
Sbjct: 52  MMQDLFHRDAADYRWEMFDPVCNGDLGYAWSLSSFTSTVPDFRGERVVIDGMSRFILRGE 111

Query: 61  KITEYHEVANTAPAFVDLNFAPERIAKIVGKQGAELKARPEMQRHL 106
            I EY E  N   A   L  APER+AK+  K    L+ RPE Q +L
Sbjct: 112 LIAEYRESVNGGVAMAQLGVAPERMAKVFRKWSGWLQHRPETQDYL 157