BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0038.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767353.1| hypothetical protein bll0713 [Bradyrhizobium ja... 464 e-129 ref|ZP_08155429.1| hypothetical protein HMPREF0724_13211 [Rhodoc... 173 3e-41 ref|YP_004007963.1| hypothetical protein REQ_32870 [Rhodococcus ... 171 8e-41 ref|YP_702941.1| hypothetical protein RHA1_ro02978 [Rhodococcus ... 169 5e-40 ref|YP_637231.1| hypothetical protein Mmcs_0053 [Mycobacterium s... 168 7e-40 >ref|NP_767353.1| hypothetical protein bll0713 [Bradyrhizobium japonicum USDA 110] dbj|BAC45978.1| bll0713 [Bradyrhizobium japonicum USDA 110] Length = 320 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/274 (81%), Positives = 242/274 (88%), Gaps = 1/274 (0%) Query: 8 FIAP-FPSWSRAMTNQPFFTRHGDGFMPTPVANGPWSPESLHGRVVIGLLAFVIEERHGS 66 I+P PS SR MT+ PFFTR GD F PT VANGPW P+SLHGRV++GLL F IEERH Sbjct: 44 LISPRVPSRSRVMTDMPFFTRDGDTFHPTEVANGPWDPKSLHGRVIVGLLGFAIEERHSG 103 Query: 67 DDFVPARLTVDMFRLPNITTPIEVTTKLVRDGMRIKMIEAEFVSGGTSMARASCQLLRKT 126 +FVPARLTVDMFRLP I PIEVTT+LVRDG+RI+++EAEFVSGG MARASCQLLRKT Sbjct: 104 PEFVPARLTVDMFRLPTIDKPIEVTTRLVRDGLRIRVVEAEFVSGGVGMARASCQLLRKT 163 Query: 127 ENAPGNVWSPPNWQAPAPAEIPKPTDPRLGMNGKWETRPIVGHMGSLGERRLWMSEVREL 186 +N GNVWSPPNW P PA+IPKPTDPRLGM+GKW TRPIVGHMGSLG RRLWMSEVREL Sbjct: 164 QNPDGNVWSPPNWDVPKPADIPKPTDPRLGMHGKWTTRPIVGHMGSLGPRRLWMSEVREL 223 Query: 187 VAGVKMTPFVHVATGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFEVVNHHAT 246 VAGV MTPFVHVA GADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGF+VVNH AT Sbjct: 224 VAGVPMTPFVHVAVGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFDVVNHQAT 283 Query: 247 DGIAIGECWLYDEKGPIGTSTVAALAQRKPMTSP 280 DG+AIGECWLYDE+GPIGT+TVAALAQRKPM +P Sbjct: 284 DGVAIGECWLYDEQGPIGTATVAALAQRKPMANP 317 >ref|ZP_08155429.1| hypothetical protein HMPREF0724_13211 [Rhodococcus equi ATCC 33707] gb|EGD23394.1| hypothetical protein HMPREF0724_13211 [Rhodococcus equi ATCC 33707] Length = 280 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 99/257 (38%), Positives = 148/257 (57%), Gaps = 11/257 (4%) Query: 24 FFTRHGDGFMPTPVANGPWSPESLHGRVVIGLLAFVIEERHGSDDFVPARLTVDMFRLPN 83 F R GDGF P + WSP+ ++G + G+LA IE HG++ FVPARLTVD+FR P Sbjct: 19 FLRRDGDGFFPLDMGISKWSPDMINGPAITGILARAIENEHGAEGFVPARLTVDLFR-PA 77 Query: 84 ITTPIEVTTKLVRDGMRIKMIEAEFVSGGTSMARASCQLLRKTENAPGNVWSPPN----W 139 + V T+ VRDG RI++ +AE + G ++ARAS LR++E PG +W+ P+ Sbjct: 78 RAEQLHVVTRSVRDGNRIRVADAEVIQQGEAVARASVVFLRRSEQPPGELWTRPDTPQPP 137 Query: 140 QAPAPAEIPKPTDPRLGMNGK---WETRPIVGHMGSLGERRLWMSEVRELVAGVKMTPFV 196 + P+ P +G +G W + + H GS +R+W ++ +VAG + +PF Sbjct: 138 PLSLLEPLQAPSHPWIGSDGHPAGW-SPSLRDHEGS-SRKRMWQYQI-PVVAGEEPSPFA 194 Query: 197 HVATGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFEVVNHHATDGIAIGECWL 256 A + S N G G+G+IN+D+T+ L RLP IG E NH + DGI++G + Sbjct: 195 RAAMVGETTSLMTNWGTAGIGFINADLTLALSRLPEGPEIGIEADNHLSVDGISVGSTTM 254 Query: 257 YDEKGPIGTSTVAALAQ 273 +D +GPIGT V+AL+ Sbjct: 255 FDRRGPIGTCIVSALSN 271 >ref|YP_004007963.1| hypothetical protein REQ_32870 [Rhodococcus equi 103S] emb|CBH49284.1| conserved hypothetical protein [Rhodococcus equi 103S] Length = 269 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 147/257 (57%), Gaps = 11/257 (4%) Query: 24 FFTRHGDGFMPTPVANGPWSPESLHGRVVIGLLAFVIEERHGSDDFVPARLTVDMFRLPN 83 F R GDGF P + WSP+ ++G + G+LA IE HG++ FVPARLTVD+FR P Sbjct: 8 FLRRDGDGFFPLDMGISKWSPDMINGPAITGILARAIENEHGAEGFVPARLTVDLFR-PA 66 Query: 84 ITTPIEVTTKLVRDGMRIKMIEAEFVSGGTSMARASCQLLRKTENAPGNVWSPPN----W 139 + V + VRDG RI++ +AE + G ++ARAS LR++E PG +W+ P+ Sbjct: 67 RAEQLHVVARSVRDGNRIRVADAEVIQQGEAVARASVVFLRRSEQPPGELWTRPDTPQPP 126 Query: 140 QAPAPAEIPKPTDPRLGMNGK---WETRPIVGHMGSLGERRLWMSEVRELVAGVKMTPFV 196 + P+ P +G +G W + + H GS +R+W ++ +VAG + +PF Sbjct: 127 PLSLLEPLQAPSHPWIGSDGHPAGW-SPSLRDHEGS-SRKRMWQYQI-PVVAGEEPSPFA 183 Query: 197 HVATGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFEVVNHHATDGIAIGECWL 256 A + S N G G+G+IN+D+T+ L RLP IG E NH + DGI++G + Sbjct: 184 RAAMVGETTSLMTNWGTAGIGFINADLTLALSRLPEGPEIGIEADNHLSVDGISVGSTTM 243 Query: 257 YDEKGPIGTSTVAALAQ 273 +D +GPIGT V+AL+ Sbjct: 244 FDRRGPIGTCIVSALSN 260 >ref|YP_702941.1| hypothetical protein RHA1_ro02978 [Rhodococcus jostii RHA1] gb|ABG94783.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 303 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 144/270 (53%), Gaps = 15/270 (5%) Query: 18 AMTNQPFFTRHGDGFMPTPVANGPWSPESLHGRVVIGLLAFVIEERHGSDDFVPARLTVD 77 A T QPFF R G G+ P A WS + + G V+GLLA+ IE + D+F R+T D Sbjct: 17 AHTAQPFFARAGSGYEPRAAAVSGWSADMVSGPAVLGLLAYAIEGEYEQDEFFATRVTAD 76 Query: 78 MFRLPNITTPIEVTTKLVRDGMRIKMIEAEFVSGGTSMARASCQLLRKTENAPGNVWSPP 137 +FR P I+V ++++R G RI+++EAE + G +ARA+ R++ NA G W Sbjct: 77 LFR-PVRMCRIDVRSRIIRWGNRIRLVEAELIQSGELVARATVAFYRRSRNAAGAHWVDS 135 Query: 138 NW-QAPAPAEIPKPTDPRL----GMNGKWETRPIVGHMGSLGERRLWMSEVRELVAGVKM 192 Q P+P E P RL G++ WE P G +R+ + ++ G Sbjct: 136 RVPQPPSPTEHPGE---RLIGTSGVDADWEPLPQGGPAWRTSDRKRIWTTGWSVIEGEAT 192 Query: 193 TPFVHVATGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFEVVNHHATDGIAIG 252 TPFV A AD + N G +G+GYIN DVT+ L RLP +G E +H A DG+A+G Sbjct: 193 TPFVRAAMVADLTNLVTNMGTEGIGYINGDVTLALTRLPAGIELGLEADSHRACDGVAVG 252 Query: 253 ECWLYDEKGPIGTSTVAALA------QRKP 276 ++D GP+G TV+A+ QR+P Sbjct: 253 SATMFDRDGPLGICTVSAIENDRRTLQRQP 282 >ref|YP_637231.1| hypothetical protein Mmcs_0053 [Mycobacterium sp. MCS] ref|YP_936071.1| hypothetical protein Mkms_0062 [Mycobacterium sp. KMS] ref|YP_001068347.1| hypothetical protein Mjls_0043 [Mycobacterium sp. JLS] gb|ABG06175.1| conserved hypothetical protein [Mycobacterium sp. MCS] gb|ABL89281.1| conserved hypothetical protein [Mycobacterium sp. KMS] gb|ABN95856.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length = 276 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 137/256 (53%), Gaps = 8/256 (3%) Query: 24 FFTRHGDGFMPTPVANGPWSPESLHGRVVIGLLAFVIEERHGSD-DFVPARLTVDMFRLP 82 FF GD F+PT +A GPW E++ G V GLL V+E +D + PARLTVD+ R P Sbjct: 11 FFVPEGDTFIPTGIARGPWG-ETVSGTYVGGLLGHVVERDTDADPEVAPARLTVDLLR-P 68 Query: 83 NITTPIEVTTKLVRDGMRIKMIEAEFVSGGTSMARASCQLLRKTENAPGNVWSPPNWQAP 142 P+ + +VR G R+ + +AE V GT +ARAS LLR+ P + W+ P P Sbjct: 69 VAMAPVHTRSTVVRRGRRLWLADAELVQAGTVVARASALLLRRGPEPPDDAWTSPVNMPP 128 Query: 143 AP---AEIPKPTDPRLGMNGKWETRPIVGHMG--SLGERRLWMSEVRELVAGVKMTPFVH 197 P EI T G + P G G + +W+ E+ L+ GV +TPFV Sbjct: 129 LPPDPTEIGTRTTVLWVFGGADPSTPTADLSGWQQSGPKSVWVREITPLIDGVTLTPFVR 188 Query: 198 VATGADFASPFANAGDQGLGYINSDVTIYLHRLPVTNWIGFEVVNHHATDGIAIGECWLY 257 A D+AS N G GL +IN+D T+ L RLP +G + HHA DG++ G L+ Sbjct: 189 AAIAGDYASSLTNFGSTGLPFINADYTVSLSRLPDGPHLGLAALTHHACDGVSTGVATLF 248 Query: 258 DEKGPIGTSTVAALAQ 273 D +GPIG +TV ALA Sbjct: 249 DHRGPIGNATVTALAN 264