BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0032.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002963845.1| hypothetical protein MexAM1_META1p2815 [meth... 443 e-122 ref|YP_001768425.1| integrase domain-containing protein [Methylo... 338 2e-90 ref|YP_467792.1| phage integrase family recombinase [Rhizobium e... 317 4e-84 ref|ZP_07658308.1| phage integrase family recombinase protein [R... 286 7e-75 ref|ZP_01044728.1| site-specific recombinase, phage integrase fa... 285 1e-74 >ref|YP_002963845.1| hypothetical protein MexAM1_META1p2815 [methylobacterium extorquens AM1] gb|ACS40568.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 541 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 255/547 (46%), Positives = 330/547 (60%), Gaps = 28/547 (5%) Query: 13 SRPWKHPKTGIYQLRKAVPEDLRKLVGKREEKVSLQTRNPAEAKVRHAKALAELEARWAN 72 +RPWKHPKTGIY LR+AVP DL L+GKREEK+SL T++P AK HA AL EL+ RW N Sbjct: 3 TRPWKHPKTGIYYLRRAVPADLLALIGKREEKISLGTKDPVRAKSLHAHALLELDGRWTN 62 Query: 73 LRAGPVPLTEREAHRFAMVAYERWLEQYRDNPSQQTNWDTVAGARLFGPPQ-----TREE 127 LRAGP L+EREAH Y W++Q+RD PSQQ W G L+ P+ + + Sbjct: 63 LRAGPKLLSEREAHEMVEPLYAWWIDQHRDEPSQQAFWRIDLGENLW--PRRPSGWSLQS 120 Query: 128 ILAAS--QRALDGAPELPEDKIFRMEQACLDAANGYLTSNGIIVDDQNRRTMARALGAAI 185 LAA+ A D A D ME+ C D A+ L GI+VD +RR +ARA+ A + Sbjct: 121 NLAATLINEAADPAVGARRD----MEEWCTDQADAVLKQRGIVVDQSDRRKLARAVAAVM 176 Query: 186 QRASLTLAKLARGEGEDSPGPQVIRFPEWP-ARAEQAKNDANSAASDDSLSALVEHWWKE 244 QRASL L A+GE D G Q I P A A Q + A LSALVE WW+E Sbjct: 177 QRASLALKAAAQGESLDV-GQQPIARSTLPLAMAVQPYDTAPITLPPAKLSALVEAWWRE 235 Query: 245 AKAAGRKQSTYESYRNTVAKLVAFLKHDQASRVTPQDIVRYKDHRLQGG------ASAKT 298 A+ G+ ST E+Y + L FL HD A RVT QDIVR+KDHRL SA T Sbjct: 236 AERTGKSVSTREAYAHAFRLLTRFLGHDDAHRVTKQDIVRFKDHRLASRKRNGELVSATT 295 Query: 299 VKDSDLAGLKTVFGWAVMNRRMASNPAEGLTIKVGKSRKLRSKGFYDQEASAILKYARSF 358 VK+SDLA LK VFGWA N +A NPA G+T+ KLR + F +EA +L+ A Sbjct: 296 VKNSDLAALKAVFGWAHDNGHVAGNPAVGVTVAKAAKVKLREREFTAEEARTLLRAALHL 355 Query: 359 AAGREAPKLAAAKRWVPWLCAFTGARVGEMLQLRKEDVRREGKH------WVVHVTPEAG 412 GRE P+ AAKRW+PW+ AFTGARVGE+ Q+R++D+RRE W++ +TPEAG Sbjct: 356 TPGRELPQTYAAKRWIPWVLAFTGARVGEIAQMRRQDLRREAVAGYPDGVWMLRITPEAG 415 Query: 413 PVKTDEARDVVLHRQIIEEGFLEFYENSKSGYIFIDPKAGDLGVRKAVKTARNKVNAFVR 472 VKT +ARDV LH Q++E GF F + ++ +FI P A V ++ +N+++ F R Sbjct: 416 TVKTKQARDVPLHPQLVELGFPAFVQAVRAERLFIVPDAAG-RVAGPLQGVKNRLSEFAR 474 Query: 473 EVVKDPNVDPSHGWRHRFKTVGIEQEVAMRVLDAIQGHAPRNASEDYGDVTITAKAKAIG 532 + V DP V P+H WRHRF+TV E +A V+DA+ G + R+ E YG V++ A+A AI Sbjct: 475 QYVSDPGVSPNHSWRHRFRTVATEAGIAGNVIDALCGWSARSVGERYGSVSLKARADAIA 534 Query: 533 RFPNINV 539 R P I + Sbjct: 535 RLPQITL 541 >ref|YP_001768425.1| integrase domain-containing protein [Methylobacterium sp. 4-46] gb|ACA15991.1| integrase domain protein SAM domain protein [Methylobacterium sp. 4-46] Length = 515 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 203/536 (37%), Positives = 304/536 (56%), Gaps = 27/536 (5%) Query: 8 MPLAMSRPWKHPKTGIYQLRKAVPEDLRKLVGKREEKVSLQTRNPAEAKVRHAKALAELE 67 M L MSRP HP++G+Y LRK VP DL VGKRE +SLQT++PAEA+ R A+ L +LE Sbjct: 1 MVLPMSRPQLHPRSGVYWLRKRVPADLVAAVGKREVTLSLQTKDPAEARKRCAEELLKLE 60 Query: 68 ARWANLRAGPVPLTEREAHRFAMVAYERWLEQYRDNPSQQTNWDTVAGARLFGPPQT--R 125 +WA LR+GP LTE EAH A ++ WLE +R NPS+Q+ W +L+ PP Sbjct: 61 QQWAGLRSGPRSLTEVEAHGLACKVHDWWLETHRANPSEQSFWPVGLADKLWAPPAPVGA 120 Query: 126 EEILAASQRALDGAPELPEDKIFRMEQACLDAANGYLTSNGIIVDDQNRRTMARALGAAI 185 + +L ++G + ++ +E C+ A L +G+ VDD +R +A+A+ AA+ Sbjct: 121 QTLLG---ELVNGRINPDQWRVRELETWCVQTAGTVLGKHGLTVDDISRERLAKAVAAAV 177 Query: 186 QRASLTLAKLARGEGEDSPGPQVIRFPEWPARAEQAKNDANSAASDDSLSALVEHWWKEA 245 QRASLTLA+ ARGE V+ P P A+ S LV+ W E Sbjct: 178 QRASLTLARHARGEFNGVRLSDVVTAPISPLHVAAARPPV-------SFGELVKGWAAEK 230 Query: 246 KAAGRKQSTYESYRNTVAKLVAFLKHDQASRVTPQDIVRYKDHRLQGGASAKTVKDSDLA 305 + A +++ YE + + + V+FL H+ A RVTP D+ R+K+ + G + KT+ D L Sbjct: 231 RPA--EKTLYE-WTRVMTQFVSFLDHEDAGRVTPDDVQRWKEALIAKGLAPKTISDGKLV 287 Query: 306 GLKTVFGWAVMNRRMASNPAEGLTIKVGKSRKLRSKGFYDQEASAILKYARSFAAGREAP 365 L+ +F WA NRR+ASNPAE +++ V + + F D+EA+ +L+ A + + P Sbjct: 288 VLRAIFQWAADNRRLASNPAERISMDVKRKASETIRSFTDEEAAIVLRAALT----QRDP 343 Query: 366 KLAAAKRWVPWLCAFTGARVGEMLQLRKEDVRREGKHWVVHVTPEAGPVKTDEA-RDVVL 424 L RWVPWLCA++GARV E+ QLR +DV + W + PEAGP+KT + R V L Sbjct: 344 AL----RWVPWLCAYSGARVSEVSQLRVQDVCQIEDVWCMRFDPEAGPLKTASSERAVPL 399 Query: 425 HRQIIEEGFLEFYENSKSGYIFIDPKAGDLGVRKAVKTARNKVNAFVREV-VKDPNVDPS 483 H+ ++E GFLE+ + SG +F K G R T + +VR + + D + P+ Sbjct: 400 HQAVLESGFLEYVLSVGSGPLFPKLKPDKFGKRGG--TGTKVLGRWVRSLGLTDERLAPN 457 Query: 484 HGWRHRFKTVGIEQEVAMRVLDAIQGHAPRNASEDYGDVTITAKAKAIGRFPNINV 539 H WRHR KT+G +A +++AI GH R ++ YG+ ++A + + + P I + Sbjct: 458 HSWRHRLKTLGRRHGLAPDIVNAITGHGSRTVADRYGEFEMSAMRRELMKIPAIYL 513 >ref|YP_467792.1| phage integrase family recombinase [Rhizobium etli CFN 42] gb|ABC89065.1| putative recombinase protein, phage integrase family [Rhizobium etli CFN 42] Length = 527 Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 200/541 (36%), Positives = 297/541 (54%), Gaps = 55/541 (10%) Query: 25 QLRKAVPED------------------LRKLVGKREEKV--SLQTRNPAEAKVRHAKALA 64 Q RK +P+D L +VG + ++ SL+TR+P EAK R ALA Sbjct: 10 QFRKRIPKDVIDKAGGVTLAIPVGDEVLHIVVGDKATEITGSLRTRDPREAKERQTVALA 69 Query: 65 ELEARWANLRAGPVPLTEREAHRFAMVAYERWLEQYRDNPSQQTNWDTVAGARLFGPPQT 124 L++ W +LR GP LT ++ A AY + + D+P W Sbjct: 70 YLDSAWQSLREGPKRLTHKQIAALAGEAYNALVATFEDDPGSSETW-------------- 115 Query: 125 REEILAASQRALDGAPELPEDKIFRMEQACLDAANGYLTSNGIIVDDQNRRTMARALGAA 184 ++I+ +AL G D R E+ + L + +I+D+ +R + A+G + Sbjct: 116 -KQIIQLHAKALSG------DHDAR-EKWFGPTVDQTLAKHRLIIDNDSRTALIDAVGVS 167 Query: 185 IQRASLTLAKLARGE-GEDSPGPQVIRFP--EWPARAEQAKNDANSAASDDSLSALVEHW 241 + AS+ LA+ A G+ G D+ P R+P E P + K N + ++ L E W Sbjct: 168 LSLASVRLAQNAEGDYGPDTIAP---RYPPLELPKETKTTKPLPNGS---QTIIGLAEGW 221 Query: 242 WKEAKAAGRKQSTYESYRNTVAKLVAFLKHDQASRVTPQDIVRYKDHRLQGGASAKTVKD 301 W+EAKAAGR STY++Y L F+ HD A VT DI+ +KDHRL G KT+ Sbjct: 222 WREAKAAGRTVSTYDAYSRAARLLSEFVGHDDARAVTQDDIIAFKDHRLSQGVGLKTITG 281 Query: 302 SDLAGLKTVFGWAVMNRRMASNPAEGLTIKVGKSRKLRSKGFYDQEASAILKYARSFA-A 360 DL G++ ++ W + NR+++ NPA+G+ + K +++R+ F D+EA A+L +A Sbjct: 282 GDLPGIRQLYAWGMANRKVSHNPADGVKVAKVKKKRVRNPEFSDEEAGALLAHALHHKRT 341 Query: 361 GREAPKLAAAKRWVPWLCAFTGARVGEMLQLRKEDVRREGKHWVVHVTPEAGPVKTDEAR 420 G+ + L+ AKRWVPWLCA+TGARVGEM+QLRK+D+R E W++ +TPEAG VK E R Sbjct: 342 GKASEHLSNAKRWVPWLCAYTGARVGEMVQLRKQDLRAEAGIWIIKITPEAGTVKDAEFR 401 Query: 421 DVVLHRQIIEEGFLEFYENSKSGYIFIDPKAGDL--GVRKAVKTARNKVNAFVREVVKDP 478 +V LH +IE+GF EF + GY+F+ GD R A +T +N+V F REVV DP Sbjct: 402 EVPLHPHLIEQGFPEFISKATDGYLFMK-VFGDTEEAQRAAWRTTKNRVTDFAREVVTDP 460 Query: 479 NVDPSHGWRHRFKTVGIEQEVAMRVLDAIQGHAPRNASEDYGDVTITAKAKAIGRFPNIN 538 V P+HGWRH+F+TV E ++ + +I GH ++ + YG VT AKA A+ ++P Sbjct: 461 EVQPNHGWRHKFRTVAREAGISRDISFSITGHDSKDEGDKYGTVTNKAKAAALAKYPRYE 520 Query: 539 V 539 V Sbjct: 521 V 521 >ref|ZP_07658308.1| phage integrase family recombinase protein [Roseibium sp. TrichSKD4] gb|EFO32975.1| phage integrase family recombinase protein [Roseibium sp. TrichSKD4] Length = 554 Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 188/512 (36%), Positives = 268/512 (52%), Gaps = 34/512 (6%) Query: 44 KVSLQTRNPAEAKVRHAKALAELEARWANLRA-GPVPLTEREAHRFAMVAYERWLEQYRD 102 + SL+T P E + R A ALA LE + R+ P+PL+ ++ + YE W Sbjct: 56 RFSLRTATPEEVRERQATALAYLEKVFKAARSEAPIPLSRQQCVALSQSIYEAW----SA 111 Query: 103 NPSQQTNWDTVAGARLFGPPQTRE------------EILAASQRALDGAPELPEDKIF-R 149 +P + T+A + QTRE E+L LD + ++ F R Sbjct: 112 DPGVSSR--TIA---IEIDTQTREQRVSTLSEDDEAELLRTLAGILDDDRKDSTEEAFER 166 Query: 150 MEQACLDAANGYLTSNGIIVDDQ-NRRTMARALG-AAIQRASLTLAKLARGEGEDSPGPQ 207 +E + L GI DQ +RR + R +A Q + KLA +G+ SP P Sbjct: 167 LEDRFHQVVDRALDEKGIRETDQASRRLILREFARSASQGLGVHTRKLA--DGDYSPDPN 224 Query: 208 VIRFPEWPARAEQAKNDANSAASDDSLSALVEHWWKEAKAAGRKQSTYESYRNTVAKLVA 267 RFP+W + E A S S SL L WW+EA G +ST E+Y +L Sbjct: 225 ANRFPQWTS-TEVASAAPQSPHSSVSLVGLPNDWWQEASRTGHSESTREAYTRAFRQLSE 283 Query: 268 FLKHDQASRVTPQDIVRYKDHRLQGGASAKTVKDSDLAGLKTVFGWAVMNRRMASNPAEG 327 F+ HD ASR++ +DI+ +KDHRL SA+TV D DL LK++F WAV N + NPA Sbjct: 284 FVGHDDASRISTKDIISFKDHRLTQ-VSARTVADGDLPALKSIFEWAVKNLILNDNPARD 342 Query: 328 LTIKVGKSRKLRSKGFYDQEASAILKYARSFA-AGREAPKLAAAKRWVPWLCAFTGARVG 386 + + R + F +EASAIL + +E P+ A++RW PWLCA++GARVG Sbjct: 343 VAVAKSSKTHRRMRDFTIEEASAILSASDGTKRQNKEKPQRWASRRWAPWLCAYSGARVG 402 Query: 387 EMLQLRKEDVRREGKHWVVHVTPEAGPVKTDEARDVVLHRQIIEEGFLEFYENSKSGYIF 446 E+LQLRK D+ H + +TPEA VK E R + LH IIE+GF+ + E + G +F Sbjct: 403 EVLQLRKADIITIDGHVCMKITPEAVTVKGGEERIIPLHPHIIEKGFMGYVEAAPDGPLF 462 Query: 447 IDPKAGDLGVRKAVKTARNKVNAFVREVVKDPNVDPSHGWRHRFKTVGIEQEVAMRVLDA 506 + G R A +T++NK+ F+R+ V DP+V PSHGWRH FKT+G E + +LDA Sbjct: 463 MWTGTG----RSAWRTSKNKLREFIRKHVSDPSVQPSHGWRHTFKTIGREVGIESDILDA 518 Query: 507 IQGHAPRNASEDYGDVTITAKAKAIGRFPNIN 538 I GH P + YG+ + A +A+ +FP N Sbjct: 519 ICGHRPATVGKSYGEFNVKAMTRALQKFPKFN 550 >ref|ZP_01044728.1| site-specific recombinase, phage integrase family protein [Nitrobacter sp. Nb-311A] gb|EAQ37509.1| site-specific recombinase, phage integrase family protein [Nitrobacter sp. Nb-311A] Length = 506 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 178/534 (33%), Positives = 272/534 (50%), Gaps = 30/534 (5%) Query: 8 MPLAMSRPWKHPKTGIYQLRKAVPEDLRKLVGKREEKVSLQTRNPAEAKVRHAKALAELE 67 M L+MSRPWKHP +G Y RK VP+DLR LVGK E + +L TR+P+EAK A L E+E Sbjct: 1 MALSMSRPWKHPDSGFYWFRKRVPKDLRNLVGKNELRFTLGTRDPSEAKRLLAIKLVEIE 60 Query: 68 ARWANLRAGPVPLTEREAHRFAMVAYERWLEQYRDNPSQQTNWDTVAGARLFGPPQTREE 127 RW+NLR G PL+ E R A ER+ Q P + +WD GA L+ P E Sbjct: 61 ERWSNLRRGERPLSPDEIAREAAAIGERFRRQLEAAPYEPVDWDLNIGATLWKEPTPAE- 119 Query: 128 ILAASQRALDGAPELPEDKIFRMEQACLDAANGYLTSNGIIVDDQNRRTMARALGAAIQR 187 A A + + + R + C + +LT+ + + +R +ARA +QR Sbjct: 120 -FVAQLFDPTAAQTMKDKQQSRQRKLCYYVVDLHLTAKELFLQHDDREKVARAATIELQR 178 Query: 188 ASLTLAKLARGEGEDSPGPQVIRFPEWPARAEQAKNDANSAASDDSLSALVEHWWKEAKA 247 A G+ E P + A + + A+++ W E K Sbjct: 179 AVQAHQNYLLGKAEAQPHAGM-------------STTFRQAVAPLTFEAIIQGWLIEKKP 225 Query: 248 AGRKQSTYESYRNTVAKLVAFLKHDQASRVTPQDIVRYKDHRLQGGASAKTVKDSDLAGL 307 Q T ++R + +L FL HD A RV +++V +K L AKT++DS LA + Sbjct: 226 ---NQKTEYTWRRVMKELSGFLGHDDARRVRAENLVEWKADLLSKDLKAKTIRDSKLAPV 282 Query: 308 KTVFGWAVMNRRMASNPAEGLTIKVGKSRKLRSKGFYDQEASAILKYARSFAAGREAPKL 367 + +F WAV NR++ +NPA + I + + +G+ D EA IL A + RE Sbjct: 283 RAIFQWAVDNRKLDTNPAARVNIDLKARPSEKRRGYTDDEARIILSAAHT---ERE---- 335 Query: 368 AAAKRWVPWLCAFTGARVGEMLQLRKEDVRREGKHWVVHVTPEAGPVK-TDEARDVVLHR 426 A KRWVPW+CA+TGAR+ E+ QLR ED+++ W + T EAG +K + R V +H Sbjct: 336 -AHKRWVPWVCAYTGARIAEICQLRAEDIKQIDGIWCIAFTGEAGSLKNVNSERVVPVHS 394 Query: 427 QIIEEGFLEFYENSKSGYIFIDPKAGDLGVRKAVKTARNKVNAFVREV-VKDPNVDPSHG 485 + EGFL+F +++ G +F + G R T ++ ++R + V D + P+H Sbjct: 395 ALKTEGFLKFVASARKGPLFDELSPDRFGSRGG--TGTKILSRWIRSLGVTDTRISPNHS 452 Query: 486 WRHRFKTVGIEQEVAMRVLDAIQGHAPRNASEDYGDVTITAKAKAIGRFPNINV 539 WRHR KT+G +A+ +LDA+ GH + ++ YG+ A + + + P + + Sbjct: 453 WRHRIKTLGRRYGLAVDILDAMTGHGRKTVADTYGEFPPAAMLRELSKIPPVKL 506