BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0022.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_847958.1| DNA mismatch endonuclease vsr [Syntrophobacter ...   147   5e-34
ref|YP_003808519.1| DNA mismatch endonuclease Vsr [Desulfarculus...   145   1e-33
ref|YP_001002005.1| DNA mismatch endonuclease vsr [Halorhodospir...   140   5e-32
ref|YP_758275.1| T/G mismatch-specific endonuclease [Maricaulis ...   137   6e-31
ref|YP_001858362.1| DNA mismatch endonuclease Vsr [Burkholderia ...   136   9e-31

>ref|YP_847958.1| DNA mismatch endonuclease vsr [Syntrophobacter fumaroxidans MPOB]
 gb|ABK19523.1| T/G mismatch-specific endonuclease [Syntrophobacter fumaroxidans
           MPOB]
          Length = 165

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQG 61
           EM LR +LH++GLRYRLH + LPGSPD+VFPR++A +FVHGC+WH HGC  +T P ++  
Sbjct: 24  EMKLRRSLHKIGLRYRLHDKRLPGSPDIVFPRFKAALFVHGCFWHRHGCKATTTPGTNVD 83

Query: 62  FWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAAR 120
           FW +KF  N  RD +   AL DAGWRV  VWEC+L+GK A  P+EVA  + +WL S+ +
Sbjct: 84  FWRKKFDENIARDRRHIEALQDAGWRVAVVWECSLKGKRA-DPDEVARLVSEWLVSSEK 141


>ref|YP_003808519.1| DNA mismatch endonuclease Vsr [Desulfarculus baarsii DSM 2075]
 gb|ADK85925.1| DNA mismatch endonuclease Vsr [Desulfarculus baarsii DSM 2075]
          Length = 148

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQG 61
           EM LR +LH++GLRYRLH + LPGSPD+VFPR++A +FVHGC+WH HGC  +T P ++  
Sbjct: 24  EMKLRRSLHKIGLRYRLHDKRLPGSPDIVFPRFKAALFVHGCFWHRHGCKATTTPGTNVD 83

Query: 62  FWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRS 117
           FW +KF  N  RD +   AL DAGWRV  VWEC+L GK A  P+EVA  +  WL++
Sbjct: 84  FWRKKFDENIARDRRDIEALQDAGWRVAVVWECSLEGKGA-DPDEVARLVSGWLKT 138


>ref|YP_001002005.1| DNA mismatch endonuclease vsr [Halorhodospira halophila SL1]
 gb|ABM61203.1| T/G mismatch-specific endonuclease [Halorhodospira halophila SL1]
          Length = 167

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 76/114 (66%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQG 61
           E++LR ALH  G RYRLHVR LPG PDLVFPRY AVVFVHGC+WH H CH   +P + + 
Sbjct: 25  ELVLRRALHARGFRYRLHVRDLPGCPDLVFPRYSAVVFVHGCFWHGHDCHLFRMPSTREE 84

Query: 62  FWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWL 115
           FW +K   N+ RD K  A LLD GWRV+ VWEC +RGK      E+   +  WL
Sbjct: 85  FWEKKIGRNRERDRKNRAELLDRGWRVLEVWECAMRGKDRLPSGEMLERVETWL 138


>ref|YP_758275.1| T/G mismatch-specific endonuclease [Maricaulis maris MCS10]
 gb|ABI67337.1| T/G mismatch-specific endonuclease [Maricaulis maris MCS10]
          Length = 168

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 80/130 (61%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQG 61
           EM++R  LH MG+RYRLH + LPG PDLV P+YR+V+FVHGC+WH H C     P++ + 
Sbjct: 25  EMLVRRGLHAMGIRYRLHDKRLPGKPDLVLPKYRSVIFVHGCFWHGHDCPAFKWPKTREK 84

Query: 62  FWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAARR 121
           FW EK + N+ RD K+ + L+ +GWRV  VWEC LR KT  + E +   +  W+      
Sbjct: 85  FWREKISTNRKRDEKQISDLVRSGWRVSVVWECALRSKTPDKVETILKLLASWIEQREIA 144

Query: 122 GRVGDPPAPL 131
               D P P 
Sbjct: 145 AEKSDDPTPF 154


>ref|YP_001858362.1| DNA mismatch endonuclease Vsr [Burkholderia phymatum STM815]
 gb|ACC71316.1| DNA mismatch endonuclease Vsr [Burkholderia phymatum STM815]
          Length = 148

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 2   EMMLRSALHRMGLRYRLHVRSLPGSPDLVFPRYRAVVFVHGCYWHAHGCHRSTVPRSSQG 61
           E+++RS LHR G R+RL  R LPG PD+V PRYRAVVF+HGC+WH H CH    P++   
Sbjct: 25  EILIRSLLHRRGFRFRLDARDLPGRPDIVLPRYRAVVFIHGCFWHGHDCHLFKWPQTRPE 84

Query: 62  FWSEKFAANQLRDAKKEAALLDAGWRVMTVWECTLRGKTARQPEEVAMAIRKWLRSAA 119
           FW +K   N+  DAK +AALLD+GWRV TVWEC LRG   R  + V   +  WL   A
Sbjct: 85  FWRDKIGRNRANDAKAQAALLDSGWRVATVWECALRGAN-RDIDGVLQRLVDWLHGDA 141