BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0021.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533783.1| superfamily I DNA/RNA helicase [Rhodopseudomona... 318 9e-85 ref|ZP_08627846.1| hypothetical protein CSIRO_0913 [Bradyrhizobi... 243 3e-62 ref|ZP_01303428.1| Superfamily I DNA and RNA helicase and helica... 233 3e-59 ref|YP_001991273.1| NERD domain-containing protein [Rhodopseudom... 130 4e-28 ref|YP_569262.1| ATPase [Rhodopseudomonas palustris BisB5] >gi|9... 130 4e-28 >ref|YP_533783.1| superfamily I DNA/RNA helicase [Rhodopseudomonas palustris BisB18] gb|ABD89464.1| Superfamily I DNA and RNA helicases and helicase subunits-like [Rhodopseudomonas palustris BisB18] Length = 1651 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 153/288 (53%), Positives = 203/288 (70%), Gaps = 3/288 (1%) Query: 1 VKGIDRFKNDLPAHWYGFTNLDLVLGIGKSREIDVVIVSDRRIYLVDLKDWHGQITSVDG 60 VKG++R K+ LP WY FTNL+L G+G+SRE+DV++V+D I LVDLKDW G I S G Sbjct: 15 VKGVERLKS-LPKDWYAFTNLELATGLGRSRELDVILVTDHMILLVDLKDWSGAIESDSG 73 Query: 61 RWHLNGVDKDSSPVAKITDIARSIVPLLSRELKKRPETRDLALPRIDGIVVLTGRADRSG 120 W NG D SPVAKI + ++ LL+ +L+ R E++ +P+I G+VV+TG+A+ S Sbjct: 74 NWLHNGRDTGPSPVAKIHSNVKDVLRLLTAQLRSRLESKSAPIPKIVGVVVITGKANLSK 133 Query: 121 IAETERSKVLTADEFIRIVKDNKLERQSFGNVAPEFLSRPLTDPFWKERLVRFFNAGTSP 180 IA TERS V D+F++ + KL R +FGNVAP+ ++ PLTD WK+RL +FFN + Sbjct: 134 IAATERSSVFEIDDFLKTLGSEKLRRAAFGNVAPQIVAEPLTDAVWKDRLFKFFNV-KAG 192 Query: 181 SFRPGSRRFERFQA-SDVPSFEHPKEIYREYEASEEGNKNNLGTLRLWDFTKCPDARFQN 239 SF+PG R++R+ A SD SF+HP +IYREYEA EE NLGTLRLW+F C D RFQ Sbjct: 193 SFKPGRSRYDRYVATSDQASFQHPNDIYREYEAEEENTPQNLGTLRLWNFANCMDGRFQT 252 Query: 240 EEGRQEIAGREQQVYHWLRDRSEEAEQNLLTPKIDDPERGVRYWEIYD 287 EEGR EIAGRE +V+++LRDR+E+ E +L PK DP R V YWE+YD Sbjct: 253 EEGRAEIAGREGKVFYYLRDRNEDCENWILVPKAADPNRSVNYWEVYD 300 >ref|ZP_08627846.1| hypothetical protein CSIRO_0913 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09375.1| hypothetical protein CSIRO_0913 [Bradyrhizobiaceae bacterium SG-6C] Length = 1642 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 134/299 (44%), Positives = 183/299 (61%), Gaps = 12/299 (4%) Query: 1 VKGIDRFKNDLPAHWYGFTNLDLVLGIGKSREIDVVIVSDRRIYLVDLKDWHGQITSVDG 60 V G+++ + LP+ WY FTNL+L +G G+SREID+V+++ R+ LVDLKDW+G I++ DG Sbjct: 59 VHGVEKL-SQLPSDWYAFTNLELTIGPGQSREIDLVMITPDRVLLVDLKDWNGAISAGDG 117 Query: 61 RWHLNGVDKDSSPVAKITDIARSIVPLLSRELKKR----PETRDLALPRIDGIVVLTGRA 116 RW NG D SPVAKI + R IV +L LK R P L P G+V+ GR Sbjct: 118 RWFHNGRDMGISPVAKIRENTRKIVEILKSHLKDRARQNPNAPKLQAPYFQGVVIQCGRG 177 Query: 117 DRSGIAETERSKVLTADEFIRIVKDNKLERQSFGNVAPEFLSR-PLT--DPFWKERLVRF 173 IA E+S ++FI+I+ D L ++ G P F R PLT D W+ +F Sbjct: 178 SLENIAGNEKSSAFQLNDFIKIISDESLRDKALGK--PAFKDRFPLTASDSRWRNLFEKF 235 Query: 174 FNAGTSPSFRPGSRRFERFQA-SDVPSFEHPKEIYREYEASEEGNKNNLGTLRLWDFTKC 232 FN FR G RR+ ++A SD PSF+H IY+E++ +E G LR WDF+K Sbjct: 236 FNVSGGGQFRSGRRRYSSYRATSDHPSFKHQIGIYQEFDVEDESVSRATGLLRRWDFSKA 295 Query: 233 PDARFQNEEGRQEIAGREQQVYHWLRDRSEEAEQNLLTPKIDDPERGVRYWEIYDRRRR 291 + RFQ+E+GR EIAGRE+ V +L DR+ EAE +L P+IDD ER V YWEI+++RRR Sbjct: 296 -ETRFQSEQGRNEIAGREKNVIAFLNDRNPEAETIVLQPRIDDVERTVGYWEIFEKRRR 353 >ref|ZP_01303428.1| Superfamily I DNA and RNA helicase and helicase subunit [Sphingomonas sp. SKA58] gb|EAT08892.1| Superfamily I DNA and RNA helicase and helicase subunit [Sphingomonas sp. SKA58] Length = 1659 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 175/288 (60%), Gaps = 7/288 (2%) Query: 1 VKGIDRFKNDLPAHWYGFTNLDLVLGIGKSREIDVVIVSDRRIYLVDLKDWHGQITSVDG 60 V+G+ + LP W+ +TNLDL G SREIDV+IV++ RI ++DLK+W G I S DG Sbjct: 19 VRGVSALTS-LPPEWFAYTNLDLATTTGHSREIDVIIVAEDRILVIDLKEWRGPIDSRDG 77 Query: 61 RWHLNGVDKDSSPVAKITDIARSIVPLLSRELKKRPETRDLALPRIDGIVVLTGRADRSG 120 W + D SPV KI AR+I L L+K + +++ +P++ G+VVLT AD SG Sbjct: 78 HWFNDSRDHGPSPVGKILSNARTIYTQLETHLRKYTKDKNVVVPKVQGLVVLTTNADFSG 137 Query: 121 IAETERSKVLTADEFIRIVKDNKLERQSFGNVAPEFLSRPLTDPFWKERLVRFFNAGTSP 180 I+ETER V+ + +K + G +P + LT P WK +L +FFN + Sbjct: 138 ISETERMAVVPVTTLVPALKSFHKRIELLGKASP---AGNLTSPEWKAQLSKFFNV-SKG 193 Query: 181 SFRPGSRRFERFQASDVPS-FEHPKEIYREYEASEEGNKNNLGTLRLWDFTKCPDARFQN 239 F PG R + + A+ S FEHP+ +Y E+EAS+E LG LRLWDFTK FQ Sbjct: 194 VFVPGRRTYGGYYATSTDSVFEHPEGVYAEFEASDERPSPTLGVLRLWDFTKA-QPHFQT 252 Query: 240 EEGRQEIAGREQQVYHWLRDRSEEAEQNLLTPKIDDPERGVRYWEIYD 287 E+GR EIAGREQ+V +L+DR ++ + L+ K+ DPE GVRYWE+YD Sbjct: 253 EQGRSEIAGREQEVVAYLQDRCDQCDAVLVDGKVRDPEFGVRYWEVYD 300 >ref|YP_001991273.1| NERD domain-containing protein [Rhodopseudomonas palustris TIE-1] gb|ACF00798.1| NERD domain protein [Rhodopseudomonas palustris TIE-1] Length = 1585 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 16/291 (5%) Query: 1 VKGIDRFKNDLPAHWYGFTNLDLVLGI--GKSREIDVVIVSDRRIYLVDLKDWHGQITSV 58 + G++ + P HW G+ N + G+ REID+VIV+ RI LVDLK G+I + Sbjct: 16 MAGLEDIRATFPKHWKGYANFVMRQPQRRGQDREIDIVIVTPDRIILVDLKHIRGRIENR 75 Query: 59 DGRWHLNGVDKDSSPVAKITDIARSIVPLLSRELKKRPETRDLALPRIDGIVVLTG-RAD 117 G WH + +SP KI D A+ + L+ E+ P A+P ++ +VVLT + D Sbjct: 76 GGIWHRDADIIGASPAHKIRDNAKVLASLIRSEIHHFP-----AVPPVESLVVLTHPQCD 130 Query: 118 RSGIAETERSKVLTADEFIRIVKDNKLERQSFGNVAPEFLSRPLTDPFWKERLVRFFNAG 177 SG+ + ER + L +F++I ++ R F S L L +FF+ G Sbjct: 131 PSGLDQVERDRTLKLSDFLKITREQNF-RNLFTGPTKYSESNSLCSGQCGNALQKFFSNG 189 Query: 178 TSPSFRPGSRRFERFQASDVPSFEHPKEIYREYEASEEGNKNNLGTLRLWDFTKCPDARF 237 F P RF F P+F+HP ++ E+ + + N G LRLWDF+ D F Sbjct: 190 K--LFEPRKTRFHGFMPVGDPAFKHP--LFEEFSCHQSEDPNYTGLLRLWDFSV--DGEF 243 Query: 238 QNEEGRQEIAGREQQVYHWLRDRSEEAEQNLLTPKID-DPERGVRYWEIYD 287 EE R+ IA RE+ V +R + +N + + D E +RY EI+D Sbjct: 244 IVEEARRPIAERERAVLGHIRVQDPALYENYVLRSLHFDSEYTLRYSEIFD 294 >ref|YP_569262.1| ATPase [Rhodopseudomonas palustris BisB5] gb|ABE39361.1| ATPase [Rhodopseudomonas palustris BisB5] Length = 1585 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 16/291 (5%) Query: 1 VKGIDRFKNDLPAHWYGFTNLDLVLGI--GKSREIDVVIVSDRRIYLVDLKDWHGQITSV 58 + G++ + P HW G+ N + G+ REID+VIV+ RI LVDLK G+I + Sbjct: 16 MAGLEDIRATFPKHWKGYANFVMRQPQRRGQDREIDIVIVTPDRIILVDLKHIRGRIENR 75 Query: 59 DGRWHLNGVDKDSSPVAKITDIARSIVPLLSRELKKRPETRDLALPRIDGIVVLTG-RAD 117 G WH + +SP KI D A+ + L+ E+ P A+P ++ +VVLT + D Sbjct: 76 GGIWHRDADIIGASPAHKIRDNAKVLASLIRSEIHHFP-----AVPPVESLVVLTHPQCD 130 Query: 118 RSGIAETERSKVLTADEFIRIVKDNKLERQSFGNVAPEFLSRPLTDPFWKERLVRFFNAG 177 SG+ + ER + L +F++I ++ R F S L L +FF+ G Sbjct: 131 PSGLDQVERDRTLKLSDFLKITREQNF-RNLFTGPTKYSESNSLCSGQCGNALQKFFSNG 189 Query: 178 TSPSFRPGSRRFERFQASDVPSFEHPKEIYREYEASEEGNKNNLGTLRLWDFTKCPDARF 237 F P RF F P+F+HP ++ E+ + + N G LRLWDF+ D F Sbjct: 190 K--LFEPRKTRFHGFMPVGDPAFKHP--LFEEFSCHQSEDPNYTGLLRLWDFSV--DGEF 243 Query: 238 QNEEGRQEIAGREQQVYHWLRDRSEEAEQNLLTPKID-DPERGVRYWEIYD 287 EE R+ IA RE+ V +R + +N + + D E +RY EI+D Sbjct: 244 IVEEARRPIAERERAVLGHIRVQDPALYENYVLRSLHFDSEYTLRYSEIFD 294