BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0020.p (1311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533783.1| superfamily I DNA/RNA helicase [Rhodopseudomona... 1288 0.0 ref|ZP_01303428.1| Superfamily I DNA and RNA helicase and helica... 1023 0.0 ref|ZP_08627846.1| hypothetical protein CSIRO_0913 [Bradyrhizobi... 948 0.0 ref|YP_569262.1| ATPase [Rhodopseudomonas palustris BisB5] >gi|9... 490 e-136 ref|YP_001991273.1| NERD domain-containing protein [Rhodopseudom... 489 e-135 >ref|YP_533783.1| superfamily I DNA/RNA helicase [Rhodopseudomonas palustris BisB18] gb|ABD89464.1| Superfamily I DNA and RNA helicases and helicase subunits-like [Rhodopseudomonas palustris BisB18] Length = 1651 Score = 1288 bits (3334), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/1308 (52%), Positives = 860/1308 (65%), Gaps = 28/1308 (2%) Query: 1 VKFSHLLAARFPEVRTLGKSRYQFLASVDVPEDVLGVDNGAKCRDVFLAGVAIHQLFFGA 60 V+ SHLLAA+FPEV +LGK+RYQFL++V PEDVLG + AK +DVFLA +A H++ FG Sbjct: 361 VRLSHLLAAKFPEVASLGKARYQFLSTVTAPEDVLGDEFSAKAKDVFLAAIAAHEILFGR 420 Query: 61 VPQ----GQPPEWNPAIDSKGEFSPLHHWFAEVLELDPARRFPDALAALHAFNRATASRP 116 VP G PP+WN ++D F PLHHWFA LE DPARRFPDA+AAL AFN ATASRP Sbjct: 421 VPDSSSPGNPPDWNASVDGDRAFEPLHHWFANALETDPARRFPDAVAALEAFNAATASRP 480 Query: 117 TPEELIAGLERFRGTVRSQRQLFSAYPTEGDPIVESDSVDIWRSGEGAGSVVVKLWKQAA 176 TP+E+I GLERFRG +RSQRQL YP + I +D +IWRS + V VK+WK+ A Sbjct: 481 TPKEVIEGLERFRGGIRSQRQLIGTYPAV-EEISATDITEIWRSQQDESPVKVKMWKRQA 539 Query: 177 WGDLKREGAAILSFLERSADMKADRPSGLPTVKEVLWLGDALAVVQAWIDGPTLAELLEA 236 WGD REG IL FL R+ D+K P G +++VLWLGDA+ +VQ WI G TLA L + Sbjct: 540 WGDQSREGPRILDFLNRALDLKLSPPQGCAAIRDVLWLGDAIVLVQDWIGGDTLASSLAS 599 Query: 237 PTDELRSPKGALSLLQRLITVIVQLHERGIGHGDIKPANIVI--VPDGNPVFIDTIDFSP 294 D P +L+ L +L+ + +LH RG HGD+KP NI++ PV +DTIDF+P Sbjct: 600 KPDSWLDPHASLTFLVQLVETVTELHARGAAHGDLKPDNIIVRDAETREPVLVDTIDFTP 659 Query: 295 AGDGERVSLAYAPESGGRFERDRFALTKIAEELFTCAQFEAEDAGRLTIAIRDCREKEPP 354 A DG+ S AYAPE+G R ERD FA+TKI EE+ A + AI CR P Sbjct: 660 ASDGDIASSAYAPEAGSRQERDNFAVTKIVEEVLAKCPINPRAAVAVASAIATCRNNVPQ 719 Query: 355 LATILPLLDAVEEIIRRLDAPAIGAADALPREINIAIAQTATGPIAPDEGFLFLRVRRDA 414 AT+LPL+DA LDA + A+A I ++I TGP+ PDEG L+LR R D Sbjct: 720 NATLLPLIDA-------LDAALVPDAEAPRLSIALSIWSAETGPVFPDEGRLYLRARGDV 772 Query: 415 ERGLLSLIIRGACEEVAVRLDRQGKAISARRHPLEQRYIRRSAAQEFHQIDTVLKVVRSD 474 +L+IRG EE+ +RLD +G S RR + Q +I R + EF I L VV SD Sbjct: 773 S----ALVIRGIGEEIEIRLDVKGVPFSGRRRTVTQGWIARVSKYEFKSIAADLTVVSSD 828 Query: 475 LTDLSGLEPLLSHQVVKQRIDEALAGDVSPAPADPEEAREVRLSEEQ---AEEALAEEVA 531 D S L LL V+ EAL G P AD + E EE AE+ L EE+ Sbjct: 829 FNDFSELAALLEDSDVR----EALGGAKEPKRADVADEEEPGDREELGDVAEDVLVEEIV 884 Query: 532 ALPASI-DLSIDVPRLWRALIDVENELTIEGTAQLESFFDRATGRHKVPFELETGVFEFA 590 A PA++ + IDVP LWR+LI VE ELT EG A E FFDR RH VPFEL +G F+F Sbjct: 885 AAPAAVRTVDIDVPELWRSLIGVEAELTTEGLALSEGFFDRNLRRHVVPFELSSGTFDFD 944 Query: 591 RNDTVGVLRQDRKGGWRRIGELDVQLSRPELAVINASDLGTRYQGQLIDAGQRLRFVSFF 650 R DTVGV + D KG WRR+GELD S+P + VI+ ++ Q +LI+ QRLRF S F Sbjct: 945 RADTVGVQKLDAKGVWRRVGELDTARSKPGVVVIDPTEYANPNQTRLIEENQRLRFTSHF 1004 Query: 651 EEQSLRRRTDAVDRILAGNGRSRELLSVFETRLEVSPTQFQHQTDEQALAGYELNADQKL 710 E QSLRRR A++++L+ R L+ VF+ R + P D+ + Y LN QK Sbjct: 1005 ELQSLRRREGAIEKVLSRQARVPGLIDVFDPRQRLLPVTAPCALDDTLVEAYGLNPSQKE 1064 Query: 711 AFDRIIKSRPVGLLQGPPGTGKTRFIAALTHYAITKGLARNVLVASQSHEAVNTAAEAVL 770 A ++ RP+GLLQGPPGTGKT+FIAALTHYA+ KGL RNVL+ASQSHEAVN AAE+VL Sbjct: 1065 AMSALLGVRPLGLLQGPPGTGKTKFIAALTHYALAKGLVRNVLLASQSHEAVNNAAESVL 1124 Query: 771 TLFRKTGGLPSLLRVAMDEDVVSPPLRPFHTAKVEQSLKDRFRASFRERLAVAGEALGLP 830 LFR++GG PS+LRV E VVS L P+HT +VE KDRFRA ERL +AG ALGLP Sbjct: 1125 ALFRRSGGDPSILRVGA-EGVVSDRLLPYHTERVELLFKDRFRAQQTERLRIAGAALGLP 1183 Query: 831 DSAIDDIVLLESGIRPIAARMIELLHSEERDEQRINGLAETVNLHLERLKLNELSASIDE 890 + +D+ + +E+ +RP+ R+ ELL S D R++GL +T+ HL L L + I E Sbjct: 1184 EGLVDEFLFVETAVRPVCERIAELLGSAGSDASRVDGLRQTLRAHLAHLGLPDDLTGI-E 1242 Query: 891 QDWLTLAERAAQRLMARHARTDGINAERADRLCSAAAVGRDFVGTVSRIQRSFESFLAGT 950 D +++ L+ R G+NA A RL +A + RDFV + S QRSFE FLAGT Sbjct: 1243 GDITAFIDKSVGALVERRKGEPGVNAANAARLRTAGKIARDFVTSASTAQRSFEPFLAGT 1302 Query: 951 RQIVVGTCVGLGRTSLGLTSTAFDLVVVDEAARCTASELLVPLQAARWVVLVGDHAQLEP 1010 RQIV GTCVGLGR SLGLTST FDLVVVDEAARCTASEL VPLQA RW++LVGD AQLEP Sbjct: 1303 RQIVAGTCVGLGRPSLGLTSTPFDLVVVDEAARCTASELSVPLQAGRWIILVGDQAQLEP 1362 Query: 1011 QHKPEVINQVAERTGIAKREIQRSDFERVFSTAYGRHSGARLKTQYRMWPPIGQLVSETF 1070 QHKPEV+ QV RTG AK EI RSDF+RVF+TAYG +G +LKTQYRM P IG+LVS+TF Sbjct: 1363 QHKPEVVQQVGARTGFAKGEIIRSDFDRVFATAYGSVAGKKLKTQYRMLPAIGRLVSDTF 1422 Query: 1071 YPDLALEPGRTEPEIDPLLLPAGLDKPLIWVETDALGEAAFDRREEEGSSRINRVEADAI 1130 YP++ LE GR +PEIDP +LP+ L PL W+ TD+ G+ F+ E G+SRINRVEAD + Sbjct: 1423 YPEIKLEHGRDKPEIDPSVLPSDLGVPLTWIATDSFGDQGFESLEAGGTSRINRVEADCL 1482 Query: 1131 MSLLEDWHGHEPFREWLVTQQKHLAGIGVICMYAAQRDLIRRKLRQSPLAYLLDQHIKVG 1190 ++LL W+ HEPFR+WL TQ K+ G+GVICMYAAQRD +R +L ++P L +H+KV Sbjct: 1483 LTLLTQWYEHEPFRDWLTTQTKYPHGVGVICMYAAQRDHLRNRLLKAPHGDTLLRHVKVD 1542 Query: 1191 TVDSYQGKENPIIVLSLVRNNDGGRQEGGVKCIQEGFLSAPNRVNVAASRAMDRLVIVGA 1250 TVDSYQGKENPI++LSLVRNN G Q GV ++EGFLS NR+NV+ SRAMDRLVIVG Sbjct: 1543 TVDSYQGKENPIVILSLVRNNADGPQRSGVATVREGFLSRSNRINVSISRAMDRLVIVGC 1602 Query: 1251 RMRWTSWKPLGRLAAGFERQIAAGTARAVGAETLLDQESGAKAKPGQR 1298 RW P+ RLA F + G A V A LL + +AK +R Sbjct: 1603 NARWPQGGPMRRLADNFGNALGGGEAALVHASDLLSAKKAPRAKKSER 1650 >ref|ZP_01303428.1| Superfamily I DNA and RNA helicase and helicase subunit [Sphingomonas sp. SKA58] gb|EAT08892.1| Superfamily I DNA and RNA helicase and helicase subunit [Sphingomonas sp. SKA58] Length = 1659 Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/1308 (45%), Positives = 797/1308 (60%), Gaps = 47/1308 (3%) Query: 1 VKFSHLLAARFPEVRTLGKSRYQFLASVDVPEDVLGVDNGAKCRDVFLAGVAIHQLFFGA 60 VK SHL+AA +P+VR+LG+SR+QFLA+ +PED+ V + RDVFLA A+H+L F Sbjct: 361 VKLSHLMAASYPDVRSLGESRFQFLATGKLPEDLFDVPSSPTRRDVFLAASAVHRLLFNV 420 Query: 61 VPQGQP--PEWNPAIDSKGEFSPLHHWFAEVLELDPARRFPDALAALHAFNRATASRPTP 118 P EW+ D++GEF LH W L DPA RF +A AL AFN A A RPTP Sbjct: 421 PPSANSGFSEWDSGADAEGEFLELHGWLGIALSADPAVRFANAGEALSAFNAAVAVRPTP 480 Query: 119 EELIAGLERFRGTVRSQRQLFSAYPTEGDPIVESDSVDIWRSGEGAGSVVVKLWKQAAWG 178 E+I GLER RG++++Q LF YP + P+ + D+ +WR+ + ++VK+WK+A+WG Sbjct: 481 AEVIEGLERHRGSIKTQLDLFMTYPPQ-QPLRDDDARAMWRTSKDGRELLVKVWKRASWG 539 Query: 179 DLKREGAAILSFLERSADMKADRPSGLPTVKEVLWLGDALAVVQAWIDGPTLAELLEAPT 238 D ++EG IL FL+R A++ A G + +WLGDA+ ++Q WID P LA L++ + Sbjct: 540 DQQKEGPRILDFLDRVAEIAAGDLGGCAPIVGAMWLGDAIVMIQEWIDRPDLASLIDGAS 599 Query: 239 DELRSPKGALSLLQRLITVIVQLHERGIGHGDIKPANIVIVPD--GNPVFIDTIDFSPAG 296 L P LSL+ L + + +LH + HGD+KPANI++ P +PV ID +DFS A Sbjct: 600 GHLDRP-ARLSLVASLCSRVEELHTLRLAHGDLKPANILVDPTRPEDPVLIDLLDFSSAS 658 Query: 297 DGERVSLAYAPESGGRFERDRFALTKIAEELFTCAQFEAEDAGRLTIAIRDCREKEPPLA 356 DGER+S AY PESGGRFERD FA+T IAE+LF A E AGR +AI R EP A Sbjct: 659 DGERISSAYVPESGGRFERDCFAVTVIAEQLF--ADDECSVAGRARLAINKIRMDEPANA 716 Query: 357 TILPLLDAVEEIIRRLDAPAIGAADALPREINIAIAQTATGPIAPDEGFLFLRVRRDAER 416 T++PLLDA L A A +A P + + A G + DEG +LR+ R Sbjct: 717 TLMPLLDA-------LSASEPEAREAEP--LRVFSPHVAAGRMLADEGRYYLRM---PPR 764 Query: 417 GLLSLIIRGACEEVAVRLDRQGKAISARRHPLEQRYIRRSAAQEFHQIDTVLKVVRSDLT 476 + L++RGACEE+ +RLD GK I R +EQ IRR EF + + V +T Sbjct: 765 KRM-LVLRGACEELEIRLDVAGKPIRIERRDIEQSRIRRVERHEFGSFEGSIVVEDGAVT 823 Query: 477 DLSGLEPLLSHQVVKQRIDEALAGDVSPAPA---DP-EEAREVR-------LSEEQAEEA 525 D++ L P+L V + + EA+ A DP E+A E +S E E+ Sbjct: 824 DVTALLPVLERDDVVKAVTEAIGQITQEQDAVEQDPIEDADESSPSTEDGVVSSEPPEDD 883 Query: 526 LAEEVAALPASIDLSIDVPRLWRALIDVENELTIEGTAQLESFFDRATGRHKVPFELETG 585 L E +AA + +DV RLW+ L+D E EL G +S ++R++ RHKV F+L +G Sbjct: 884 LIEAIAA-QSHPSGKVDVARLWKLLVDAERELITYGHVSEDSVYERSSNRHKVQFDLHSG 942 Query: 586 VFEFARNDTVGVLRQDRKGGWRRIGELDVQLSRPELAVINASDLGTRYQGQLIDAGQRLR 645 ++ R D V V R+DR+G WR IG+LD+Q S+P+ I + L + G LR Sbjct: 943 SLDYNRRDRVLVEREDRRGNWRPIGQLDLQRSKPDHLFIESFRAEQSNGAALTEEGDELR 1002 Query: 646 FVSFFEEQSLRRRTDAVDRILAGNGRSRELLSVFETRLEVSPTQFQHQTDEQALA-GYEL 704 F S EE SL RR AV RI+ R+R L+ +F+ R +P + ++L Y L Sbjct: 1003 FRSRMEETSLDRRQAAVTRIVGRQSRTRNLIDIFDPRTGATPFRLTEAYRTESLKEQYAL 1062 Query: 705 NADQKLAFDRIIKSRPVGLLQGPPGTGKTRFIAALTHYAITKGLARNVLVASQSHEAVNT 764 N Q A ++ +RP+ L+QGPPGTGKT FIAAL H A+T GLARNVL+ASQ+HEAVN Sbjct: 1063 NDLQAQALASVLGTRPLALVQGPPGTGKTVFIAALVHAALTLGLARNVLLASQAHEAVNN 1122 Query: 765 AAEAVLTLFRKTGGLPSLLRVAMDEDVVSPPLRPFHTAKVEQSLKDRFRASFRERLAVAG 824 AAEAVL LF G +PS+LRV +E VVS L PFH +VEQ KDRFRA RERLA+A Sbjct: 1123 AAEAVLKLFANAGEVPSILRVG-NEGVVSDRLLPFHVERVEQLQKDRFRAEMRERLAIAA 1181 Query: 825 EALGLPDSAIDDIVLLESGIRPIAARMIELLHSEERDEQRINGLAETVNLHLERLKLNEL 884 + LG+PDS D +V +E IRP+A +++ L ++ ++R L +T+ + L EL Sbjct: 1182 QGLGIPDSLRDALVHVELAIRPVATKLVSL-SGDDGTQRRAEALWDTIEQQIGSL---EL 1237 Query: 885 SASIDE----QDWLTLAERAAQRLMARHARTDGINAERADRLCSAAAVGRDFVGTVSRIQ 940 ++D + L A + + R +A++ R + AA+ RDFVGTVS Q Sbjct: 1238 GGTVDRATPAESILPAVVDACLKAVPLDIRP---SADKVARFQAVAALARDFVGTVSTEQ 1294 Query: 941 RSFESFLAGTRQIVVGTCVGLGRTSLGLTSTAFDLVVVDEAARCTASELLVPLQAARWVV 1000 RS E+FLAGTRQIV GTCVGLGR++LGLTST FDLV+VDEAARCTASEL VP+QA WVV Sbjct: 1295 RSLETFLAGTRQIVAGTCVGLGRSALGLTSTPFDLVIVDEAARCTASELAVPIQAGAWVV 1354 Query: 1001 LVGDHAQLEPQHKPEVINQVAERTGIAKREIQRSDFERVFSTAYGRHSGARLKTQYRMWP 1060 LVGDH QLEPQH V+ +V++R + E+ RSDFERVF TAYGR +G L+ QYRM P Sbjct: 1355 LVGDHKQLEPQHPESVVEEVSDRLDTSVAEVARSDFERVFETAYGRAAGHTLQRQYRMLP 1414 Query: 1061 PIGQLVSETFYPDLALEPGRTEPEIDPLLLPAGLDKPLIWVETDALGEAAFDRREEEGSS 1120 PIG++VS+ FY D LE GRT+P ID ++P L P+ W T + G+ A S Sbjct: 1415 PIGKIVSDAFY-DGHLEHGRTKPMIDADVIPDELVTPVTWFNTASYGKRARQSDRNHRGS 1473 Query: 1121 RINRVEADAIMSLLEDWHGHEPFREWLVTQQKHLAGIGVICMYAAQRDLIRRKLRQSPLA 1180 N VEAD I+ +L W F WL H IG+IC YAAQRDL++RK+ + + Sbjct: 1474 LTNTVEADVIVQMLRRWSECTGFIGWLEQPSAHAHAIGIICAYAAQRDLLKRKIAMAAIH 1533 Query: 1181 YLLDQHIKVGTVDSYQGKENPIIVLSLVRNNDGGRQEGGVKCIQEGFLSAPNRVNVAASR 1240 L +KV T+DSYQGKENPI+++SLVRNN G Q G+ I+ GFL+ NR+NVA SR Sbjct: 1534 PSLQAALKVDTIDSYQGKENPIVIVSLVRNNWDGAQRDGIGTIRPGFLAKQNRINVAISR 1593 Query: 1241 AMDRLVIVGARMRWTSWKPLGRLAAGFERQIAAGTARAVGAETLLDQE 1288 AMDRLV+VG+ RW + P+ R+A+ FER + +G A + A L+ E Sbjct: 1594 AMDRLVVVGSLSRWEADGPMDRIASAFERNLESGDAAEIDALVFLEGE 1641 >ref|ZP_08627846.1| hypothetical protein CSIRO_0913 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09375.1| hypothetical protein CSIRO_0913 [Bradyrhizobiaceae bacterium SG-6C] Length = 1642 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1254 (44%), Positives = 748/1254 (59%), Gaps = 40/1254 (3%) Query: 1 VKFSHLLAARFPEVRTLGKSRYQFLASVDVPEDVLGVDNGAKCRDVFLAGVAIHQLFFGA 60 V+ SHL AAR+PEV +L + RYQFL+S + L + +D FL G A+HQLFFG Sbjct: 410 VRLSHLFAARYPEVTSLAEHRYQFLSSAIQQKAFLSALSDPFKQDCFLVGCAVHQLFFGV 469 Query: 61 VPQ--GQPPEWNPAIDSKGEFSPLHHWFAEVLELDPARRFPDALAALHAFNRATASRPTP 118 P G EW+ ++D EFS L+ WF+ L + R+FP+A L AFN A + P+ Sbjct: 470 APHFAGVSGEWDHSVDRNSEFSALYDWFSCCLSAND-RQFPNASQMLDAFNAAFSEGPSS 528 Query: 119 EELIAGLERFRGTVRSQRQLFSAYPTEGDPIVESDSVDIWRSGEGAGSVVVKLWKQAAWG 178 ++++ LER+R SQRQLF +P+ D I D V+IW S +V+VK+WK+AAWG Sbjct: 529 KQILERLERYR-RWNSQRQLFQEFPSSRD-IKSDDRVEIWCSEYDGQAVIVKMWKRAAWG 586 Query: 179 DLKREGAAILSFLERSADMKADRPSGLPTVKEVLWLGDALAVVQAWIDGPTLAELLEAPT 238 + E +L FLE++ +K P G ++EV WL DA+ ++Q + L++++ +P Sbjct: 587 EDFAEAGRLLGFLEKAELLKLTPPIGCARIREVSWLSDAIVILQDHLPHRNLSDVVVSPG 646 Query: 239 DELRSPKGALSLLQRLITVIVQLHERGIGHGDIKPANIVI--VPDGNPVFIDTIDFSPAG 296 D+ + + L L+RL+T I+ LHE G HGD+KP+NI++ + F+D ID SP Sbjct: 647 DQFPTFEDILKFLKRLLTQIILLHEAGFSHGDLKPSNILVGDSSESEITFVDLIDLSPTM 706 Query: 297 DGERVSLAYAPE-SGGRFERDRFALTKIAEELFTCAQFEAEDAGRLTIAIRDCREKEPPL 355 DGE VS AYAP +G RF RDRFA KIA+EL + ED L AI+ CR P Sbjct: 707 DGEIVSSAYAPIINGDRFTRDRFAALKIADELIPLRDGKQEDRILLAQAIQKCRVGPPEC 766 Query: 356 ATILPLLDAVEEIIRRLDAPAIGAADALPREINIAIAQTATGPIAPDEGFLFLRVRRDAE 415 AT+LP+L+A+E I+ PA + I++AI +G I DEG +R + Sbjct: 767 ATLLPILEAIESILN----PAQTESSL---AISLAIKNAQSGKILSDEGQYGIRFSIHSP 819 Query: 416 RGLLSLIIRGACEEVAVRLDRQGKAISARRHPLEQRYIRRSAAQEFHQIDTVLKVVRSDL 475 + IRGA EE+ ++L+ + +S R LEQ+ I EF I L V SD Sbjct: 820 ----IVFIRGASEEIGIKLNANCEVVSGWRKSLEQKRISALVKHEFMYISGDLDVAASDH 875 Query: 476 TDLSGLEPLLSHQVVKQRIDEALAGDVSPAPADPEEAREVRLSEEQAEEALAEEVA-ALP 534 + S L LL K P +E E + AE+ LAE + P Sbjct: 876 NEFSALNGLLESDSFKSAWKARSNSFTLSEPEIDQEEEEDVEQGDVAEDLLAEAIVRQQP 935 Query: 535 ASIDLSIDVPRLWRALIDVENELTIEGTAQLESFFDRATGRHKVPFELETGVFEFARNDT 594 +I +DVP LWR+LIDVE EL IEG A +S F RH +PF+LE G F+F R DT Sbjct: 936 TAI---VDVPTLWRSLIDVEEELKIEGIASGDSTFRMGRRRHVLPFDLEEGTFDFNREDT 992 Query: 595 VGVLRQDRKGGWRRIGELDVQLSRPELAVINASDLGTRYQGQLIDAGQRLRFVSFFEEQS 654 V + R DRKG W+ +G LD+ +S P L I+ + + LI+ G RLRF S FE S Sbjct: 993 VLIERLDRKGAWKELGILDISISSPSLLAIDCARRHPEARDGLIEEGTRLRFRSHFEVTS 1052 Query: 655 LRRRTDAVDRILAGNGRSRELLSVFETRLEVSPTQFQHQTDEQALA-GYELNADQKLAFD 713 RR A RIL+ L+ F + + +H D+ L Y+LN Q AF+ Sbjct: 1053 RSRREVATSRILSRQAVIPSLIETFSPDRSPNVSLMRHSIDKDLLQRFYKLNGSQIEAFE 1112 Query: 714 RIIKSRPVGLLQGPPGTGKTRFIAALTHYAITKGLARNVLVASQSHEAVNTAAEAVLTLF 773 RI+ RP+GLLQGPPGTGKT FI A+ HYA+T GLARNVL+ASQ+HEAVN AAEAVL LF Sbjct: 1113 RILSLRPLGLLQGPPGTGKTLFIGAIIHYALTHGLARNVLLASQAHEAVNNAAEAVLQLF 1172 Query: 774 RKTGGLPSLLRVAMDEDVVSPPLRPFHTAKVEQSLKDRFRASFRERLAVAGEALGLPDSA 833 K PS++RV E VS L +H+++VE + KDRFRA++RER+ + G+ LGL Sbjct: 1173 -KPDERPSIVRVGQ-EGSVSDELISYHSSRVEFAYKDRFRANYRERMRIVGDNLGLSTQL 1230 Query: 834 IDDIVLLESGIRPIAARMIELLHSEERDEQRINGLAETVNLHLERLKLNELSASIDEQDW 893 D++V +E +RP A R +E L ++ D+ R GL T+ +++L ++ +I+ Sbjct: 1231 CDELVFIERSLRPTAQRYLEQL--DQLDQSRAEGLRRTIETFIQKL---DVPVAINHD-- 1283 Query: 894 LTLAERAAQRLMARHARTDGINAERADRLCSAAAVGRDFVGTVSRIQRSFESFLAGTRQI 953 L A Q + RH TD ER RL S A D++G+VS +RSFE+FLAGTRQ+ Sbjct: 1284 --LVNSAIQHVGDRHGVTDFDRVERFRRLFSLA---NDYLGSVSTQERSFETFLAGTRQM 1338 Query: 954 VVGTCVGLGRTSLGLTSTAFDLVVVDEAARCTASELLVPLQAARWVVLVGDHAQLEPQHK 1013 V GTCVGLGRTSLGLTST FDLVV+DEAARCTASEL VP+QA RWV+LVGDHAQLEP H+ Sbjct: 1339 VAGTCVGLGRTSLGLTSTPFDLVVIDEAARCTASELAVPMQAGRWVILVGDHAQLEPLHR 1398 Query: 1014 PEVINQVAERTGIAKREIQRSDFERVFSTAYGRHSGARLKTQYRMWPPIGQLVSETFYPD 1073 EV+ QVA RT I E++RSDFER F++AYG +G RL QYRM PPIG++VS +FY Sbjct: 1399 TEVVEQVAARTRIPLLEVKRSDFERTFNSAYGSQAGHRLTQQYRMLPPIGRIVSSSFYGG 1458 Query: 1074 LALEPGRTEPEIDPLLLPAGLDKPLIWVETDALGEAAFDRREEE-GSSRINRVEADAIMS 1132 + R+ +D LP L PL W+ TD G A+ R E G+S N EAD I+ Sbjct: 1459 TLIHE-RSTMILDQRKLPKNLHVPLCWIATDGAGPKAYQRIEANGGTSLTNHYEADVIIR 1517 Query: 1133 LLEDWHGHEPFREWLVTQQKHLAGIGVICMYAAQRDLIRRKLRQSPLAYLLDQHIKVGTV 1192 LL++W G E FR +L IG+ICMYAAQ DL+R K R + + L + +GTV Sbjct: 1518 LLKEWDGEEQFRRYLRDHFPKKNAIGIICMYAAQCDLLRHKFRIAGFSDALRSAVAIGTV 1577 Query: 1193 DSYQGKENPIIVLSLVRNNDGGRQEGGVKCIQEGFLSAPNRVNVAASRAMDRLV 1246 DSYQGKEN I+VLSLVRNN+ G E G I++GFLS PNR+NVA SRAMD++V Sbjct: 1578 DSYQGKENAIVVLSLVRNNNDGAPEAGRATIRQGFLSRPNRINVALSRAMDQVV 1631 >ref|YP_569262.1| ATPase [Rhodopseudomonas palustris BisB5] gb|ABE39361.1| ATPase [Rhodopseudomonas palustris BisB5] Length = 1585 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 424/1303 (32%), Positives = 629/1303 (48%), Gaps = 157/1303 (12%) Query: 1 VKFSHLLAARFPEVRTLGKSRYQFLAS-VDVPEDVLGVDNGAKCR-DVFLAGVAIHQLFF 58 V S AA FPE +++G +R + LA VPEDV G + DVFLAG + L Sbjct: 355 VVLSSFGAAHFPERKSIGGARSKLLAGGYRVPEDVGESQKGTPFQQDVFLAGAVVWNLLV 414 Query: 59 GAVPQ---GQPPEWNPAIDSKGEFSPLHHWFAEVLELDPARRFPDALAALHAFNRATASR 115 GA + G P + ++ G WF L+++ R+ + A AF Sbjct: 415 GARLEEIDGVPVWSSRDLEDVGLPDAFQGWFERCLKINANERYESGVDAADAF------- 467 Query: 116 PTPEELIAGLERFRGTVRSQRQLFSAYPTEGDPIVESDSVD--------IWRSGEGAGSV 167 EL+ E+ +RQL AY + DPI + + D I++S + S Sbjct: 468 ---AELLRKTEK----ASLERQL-DAYRRDIDPISDYEPSDWISKKPYRIYKSLKDNESH 519 Query: 168 VVKLWKQAAWGDLKREGAAILSFLERSADMKADRPSGLPTVKEVLWLGDALAVVQAWIDG 227 VK W + G+ ++ A ++ F ++ ++ LP + D L ++Q W+DG Sbjct: 520 FVKSWPERILGERRKSAARLIEFFGKADALRRIDAKWLPRISVACLCTDGLLLIQDWVDG 579 Query: 228 PTLAELLEAPTDELRSPKGALSLLQRLITVIVQLHERGIGHGDIKPANIVIVPDGN---P 284 E L A +P+G + LI + +LH+ + HGDI P NI++ DG+ P Sbjct: 580 ----EKLSACDVSTWTPEGLRRFVVGLIDAVDELHKLELNHGDISPENILVCFDGDIPRP 635 Query: 285 VFIDTIDFSPAGDGERVSLAYAP-ESGGRFERDRFALTKIAEELFTCAQFEAEDAGRLTI 343 V +D +DFS A D R + AY P E RDR+A+ +IA EL +AE L + Sbjct: 636 VLVDVVDFS-ADDIGRSTPAYCPAEDNDLRSRDRYAVGQIALELAEACT-DAETEALLRL 693 Query: 344 AIRDCREKEPPLATILPLLDAVEEIIRRLDAPAIGAADALPREINIAIAQTA-TGPIAPD 402 C E P T+ L DAV + RR+ A + +I I +T G + D Sbjct: 694 GAGKCAEGAAPWLTLKALKDAV--VFRRV------APTKIKLDIEIETPRTTFEGAMLSD 745 Query: 403 EGFLFLRVRRDA----------ERGLLSLIIRGA--CEEVAVRLDRQGKAISARRHPL-- 448 G + + A +R + + A E +A R+D G+A A+RH L Sbjct: 746 NGVFHIVKSKRAPDSIEVFGFDQRVTIDFDPKDAKPVEAIANRID-MGQAAWAQRHRLLS 804 Query: 449 --EQRYIRRSAAQEFHQIDTVLKVVRSDLTDLSGLEPLLSHQVVKQRIDEALAGDVSPAP 506 I RS ++ F +D + ++V S L G EP+++ ++ +A P P Sbjct: 805 FEGSLKIVRSRSRRFVGLDHLPELVASHL----GSEPVIAKSEAAPKVTDA------PDP 854 Query: 507 ADPEEAREVRLSEEQAEEALAEEVAALPASIDLSIDVPRLWRALIDVENELTIEGTAQLE 566 A P PA+ ++ W I E+E++ E T E Sbjct: 855 AAP---------------------TTKPATQKFPVE--DFWNGTILAEDEISPEFTLAQE 891 Query: 567 SFFDRATGRHKVPFELETGVFEFARNDTVGVLRQDRKGGWR--RIGELDVQLSRPELAVI 624 +DR + E + EF D + Q W ++G+LD + SR Sbjct: 892 PSYDR--DERTLHLIAEDNLPEFESGDGQSISIQ-----WNGYKLGDLDTERSR---GTT 941 Query: 625 NASDLGTRYQGQLIDAGQRLRFVSFFEEQSLRRRTDAVDRILAGNGRSRELLSVFETRLE 684 +G ++ G L+ + S +RR+ AV RIL + L+ F+ ++ Sbjct: 942 VVVRNVRNVRG--LNKGAVLKIPD--DLVSFQRRSRAVGRILDRKSQIPNLIGFFDPAVD 997 Query: 685 VSPTQFQHQTDEQALAGYELNADQKLAFDRIIKSRPVGLLQGPPGTGKTRFIAALTHYAI 744 ++P F + D+ L+ Y LN Q AF + + P+GLLQGPPGTGKT FIAA HYA+ Sbjct: 998 LAPQTFGPEIDDAILSRYGLNPAQNDAFKHLWRYGPLGLLQGPPGTGKTTFIAAFVHYAL 1057 Query: 745 TKGLARNVLVASQSHEAVNTAAEAVLTLFRKTGGLPSLLRVAMDEDVVSPPLRPFHTAKV 804 T+ +NVLV SQSHEAVN A+E +L K GG +LRV +SP L +H + Sbjct: 1058 TELRLKNVLVLSQSHEAVNAASEKILQTAAKHGGNIEMLRVGQHSK-ISPILHNYHAFAI 1116 Query: 805 EQSLKDRFRASFRERLAVAGEALGLPDSAIDDIVLLESGIRPIAARMIELLHSE---ERD 861 + ++ FRA+ +ER+ LGL I V +E+ + + + IE + RD Sbjct: 1117 QDRYRELFRAAVKERVLAPLSRLGLERDYIYAAVEIENSLGSL-LKQIEFCEQDIATSRD 1175 Query: 862 E-------QRINGL----AETVNLHLERLKLNELSASIDEQDWLTLAERAAQRLMARHAR 910 + +R+ GL A+ V H +L+ SA + +D TLA++ + Sbjct: 1176 QDTVAAAHERLEGLNLAWADAVEEHGVSPELDPRSALEEIRD--TLADQYS--------- 1224 Query: 911 TDGINAERADRLCSAAAVGRDFVGTVSRIQRSFESFLAGTRQIVVGTCVGLGRTSLGLTS 970 ++A R RL + ++ T+ RS E +A +R ++ GTCVG+GR + + Sbjct: 1225 VHDVDARR--RLLRVHGLALEWGATLGMRGRSLEELIARSRNLISGTCVGIGRYGIQVDR 1282 Query: 971 TAFDLVVVDEAARCTASELLVPLQAARWVVLVGDHAQLEPQHKPEVINQVAERTGI-AKR 1029 +DLV++DEAARCT EL V +Q+ R V+LVGDH QL P + E+I + ER I +KR Sbjct: 1283 NVYDLVIIDEAARCTPGELAVGMQSGRRVILVGDHKQLPPLYGHELIAALGERLNIRSKR 1342 Query: 1030 EIQRSDFERVFSTAYGRHSGARLKTQYRMWPPIGQLVSETFYPDLALEPGRTEPEIDPLL 1089 E+ RSDFER F +AYG+ L +QYRM P IG+LV+ETFYP LE R Sbjct: 1343 ELNRSDFERAFHSAYGKAVARTLTSQYRMAPKIGKLVAETFYPGQELETERGGAPKYYEY 1402 Query: 1090 LPAGLDKPLIWVETDALGEAAFDRREEE-GSSRINRVEADAIMSLLEDWHGHEPF-REWL 1147 LP LD ++W++T G + RRE E GSS +NR EA ++SLL+ G + F E L Sbjct: 1403 LPRPLDDEMVWIDT---GHSKHSRREREAGSSFVNRTEAAVVISLLKVIAGTKGFVDEAL 1459 Query: 1148 VTQQKHLAGIGVICMYAAQRDLIRRKLRQSPLAYLLDQHIKVGTVDSYQGKENPIIVLSL 1207 V ++ +GVICMYA Q +I L S L+ + +KVGTVDSYQGKEN I++LSL Sbjct: 1460 VDLREEEPLVGVICMYAPQVGMIEEMLITSDLSPDFQKLVKVGTVDSYQGKENRIVILSL 1519 Query: 1208 VRNNDGGRQEGGVKCIQEGFLSAPNRVNVAASRAMDRLVIVGA 1250 VR+N GF+ A NR+NVA SRAM+RL+IVG+ Sbjct: 1520 VRSNPERNM---------GFVRAANRINVALSRAMERLIIVGS 1553 >ref|YP_001991273.1| NERD domain-containing protein [Rhodopseudomonas palustris TIE-1] gb|ACF00798.1| NERD domain protein [Rhodopseudomonas palustris TIE-1] Length = 1585 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 423/1306 (32%), Positives = 630/1306 (48%), Gaps = 163/1306 (12%) Query: 1 VKFSHLLAARFPEVRTLGKSRYQFLAS-VDVPEDVLGVDNGAKCR-DVFLAGVAIHQLFF 58 V S AA FPE +++G +R + LA VPEDV G + DVFLAG + L Sbjct: 355 VVLSSFGAAHFPERKSIGGARSKLLAGGYRVPEDVGESQKGTPFQQDVFLAGAVVWNLLV 414 Query: 59 GAVPQ---GQPPEWNPAIDSKGEFSPLHHWFAEVLELDPARRFPDALAALHAFNRATASR 115 GA + G P + ++ G WF L+++ R+ + A AF Sbjct: 415 GARLEEIDGVPVWSSRDLEDVGLPDAFQGWFERCLKINANERYESGVDAADAF------- 467 Query: 116 PTPEELIAGLERFRGTVRSQRQLFSAYPTEGDPIVESDSVD--------IWRSGEGAGSV 167 EL+ E+ +RQL AY + DPI + + D I++S + S Sbjct: 468 ---AELLRKTEK----ASLERQL-DAYRRDIDPISDYEPSDWISKKPYRIYKSLKDNESH 519 Query: 168 VVKLWKQAAWGDLKREGAAILSFLERSADMKADRPSGLPTVKEVLWLGDALAVVQAWIDG 227 VK W + G+ ++ A ++ F ++ ++ LP + D L ++Q W+DG Sbjct: 520 FVKSWPERILGERRKSAARLIEFFGKADALRRIDAKWLPRISVACLCTDGLLLIQDWVDG 579 Query: 228 PTLAELLEAPTDELRSPKGALSLLQRLITVIVQLHERGIGHGDIKPANIVIVPDGN---P 284 E L A +P+G + LI + +LH+ + HGDI P NI++ DG+ P Sbjct: 580 ----EKLSACDVSTWTPEGLRRFVVGLIDAVDELHKLELNHGDISPENILVCFDGDIPRP 635 Query: 285 VFIDTIDFSPAGDGERVSLAYAP-ESGGRFERDRFALTKIAEELFTCAQFEAEDAGRLTI 343 V +D +DFS A D R + AY P E RDR+A+ +IA EL +AE L + Sbjct: 636 VLVDVVDFS-ADDIGRSTPAYCPAEDNDLRSRDRYAVGQIALELAEACT-DAETKALLRL 693 Query: 344 AIRDCREKEPPLATILPLLDAVEEIIRRLDAPAIGAADALPREINIAIAQTA-TGPIAPD 402 C E P T+ L DAV + RR+ A + +I I +T G + D Sbjct: 694 GAGKCAEGAAPWLTLKALKDAV--VFRRV------APTKIKLDIEIETPRTTFEGAMLSD 745 Query: 403 EG-FLFLRVRRDAERGLLSLIIRGACEEVAVRLDRQ--------------GKAISARRHP 447 G F ++ +R + S+ + G + V + D + G+A A+RH Sbjct: 746 NGVFHIVKSKRAPD----SIEVFGFDQRVTIDFDPKDAKPVKAIANRIDMGQAAWAQRHR 801 Query: 448 L----EQRYIRRSAAQEFHQIDTVLKVVRSDLTDLSGLEPLLSHQVVKQRIDEALAGDVS 503 L I RS ++ F +D + ++V S L G EP+++ ++ +A Sbjct: 802 LLSFEGSLKIVRSRSRRFVGLDHLPELVASHL----GSEPVIAKSEAAPKVTDA------ 851 Query: 504 PAPADPEEAREVRLSEEQAEEALAEEVAALPASIDLSIDVPRLWRALIDVENELTIEGTA 563 P PA P PA+ ++ W I E+E++ E T Sbjct: 852 PDPAAP---------------------TTKPATQKFPVE--DFWNGTILAEDEISPEFTL 888 Query: 564 QLESFFDRATGRHKVPFELETGVFEFARNDTVGVLRQDRKGGWR--RIGELDVQLSRPEL 621 E +DR + E + EF D + Q W ++G+LD + SR Sbjct: 889 AQEPSYDR--DERTLHLIAEDNLPEFESGDGQSISIQ-----WNGYKLGDLDTERSR--- 938 Query: 622 AVINASDLGTRYQGQLIDAGQRLRFVSFFEEQSLRRRTDAVDRILAGNGRSRELLSVFET 681 +G ++ G L+ + S +RR+ AV RIL + L+ F+ Sbjct: 939 GTTVVVRNVRNVRG--LNKGAVLKIPD--DLVSFQRRSRAVGRILDRKSQIPNLIGFFDP 994 Query: 682 RLEVSPTQFQHQTDEQALAGYELNADQKLAFDRIIKSRPVGLLQGPPGTGKTRFIAALTH 741 ++++P F + D+ L+ Y LN Q AF + + P+GLLQGPPGTGKT FIAA H Sbjct: 995 AVDLAPQTFGPEIDDAILSRYGLNPAQNDAFKHLWRYGPLGLLQGPPGTGKTTFIAAFVH 1054 Query: 742 YAITKGLARNVLVASQSHEAVNTAAEAVLTLFRKTGGLPSLLRVAMDEDVVSPPLRPFHT 801 YA+T+ +NVLV SQSHEAVN A+E +L K GG +LRV +SP L +H Sbjct: 1055 YALTELRLKNVLVLSQSHEAVNAASEKILQTAAKHGGNIEMLRVGQHSK-ISPILHNYHA 1113 Query: 802 AKVEQSLKDRFRASFRERLAVAGEALGLPDSAIDDIVLLESGIRPIAARMIELLHSE--- 858 ++ ++ FRA+ +ER+ LGL I V +E+ + + + IE + Sbjct: 1114 FAIQDRYRELFRAAVKERVLAPLSRLGLERDYIYAAVEIENSLGSL-LKQIEFCEQDIAT 1172 Query: 859 ERDE-------QRINGL----AETVNLHLERLKLNELSASIDEQDWLTLAERAAQRLMAR 907 RD+ +R+ GL A+ V H +L+ SA + +D TLA++ + Sbjct: 1173 SRDQDTVAAAHERLEGLNLAWADAVEEHGVSPELDPRSALEEIRD--TLADQYS------ 1224 Query: 908 HARTDGINAERADRLCSAAAVGRDFVGTVSRIQRSFESFLAGTRQIVVGTCVGLGRTSLG 967 ++A R RL + ++ T+ RS E +A +R ++ GTCVG+GR + Sbjct: 1225 ---VHDVDARR--RLLRVHGLALEWGATLGMRGRSLEELIARSRNLISGTCVGIGRYGIQ 1279 Query: 968 LTSTAFDLVVVDEAARCTASELLVPLQAARWVVLVGDHAQLEPQHKPEVINQVAERTGI- 1026 + +DLV++DEAARCT EL V +Q+ R V+LVGDH QL P + E+I + ER I Sbjct: 1280 VDRNVYDLVIIDEAARCTPGELAVGMQSGRRVILVGDHKQLPPLYGHELIAALGERLNIR 1339 Query: 1027 AKREIQRSDFERVFSTAYGRHSGARLKTQYRMWPPIGQLVSETFYPDLALEPGRTEPEID 1086 +KRE+ RSDFER F +AYG+ L +QYRM P IG+LV+ETFYP LE R Sbjct: 1340 SKRELNRSDFERAFHSAYGKAVARTLTSQYRMAPKIGKLVAETFYPGQELETERGGAPKY 1399 Query: 1087 PLLLPAGLDKPLIWVETDALGEAAFDRREEE-GSSRINRVEADAIMSLLEDWHGHEPF-R 1144 LP LD ++W++T G + RRE E GSS +NR EA ++SLL+ G + F Sbjct: 1400 YEYLPRPLDDEMVWIDT---GHSKHSRREREAGSSFVNRTEAAVVISLLKVIAGTKGFVD 1456 Query: 1145 EWLVTQQKHLAGIGVICMYAAQRDLIRRKLRQSPLAYLLDQHIKVGTVDSYQGKENPIIV 1204 E LV ++ +GVICMYA Q +I L S L+ + +KVGTVDSYQGKEN I++ Sbjct: 1457 EALVDLREEEPLVGVICMYAPQVGMIEEMLITSDLSPDFQKLVKVGTVDSYQGKENRIVI 1516 Query: 1205 LSLVRNNDGGRQEGGVKCIQEGFLSAPNRVNVAASRAMDRLVIVGA 1250 LSLVR+N GF+ A NR+NVA SRAM+RL+IVG+ Sbjct: 1517 LSLVRSNPERNM---------GFVRAANRINVALSRAMERLIIVGS 1553