BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0016.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14... 394 e-107 ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris B... 343 3e-92 ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [R... 284 1e-74 gb|EGP54043.1| UvrD/REP helicase [Agrobacterium tumefaciens F2] 281 1e-73 ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATC... 281 1e-73 >ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] Length = 1110 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/385 (54%), Positives = 265/385 (68%), Gaps = 3/385 (0%) Query: 1 MSRAYDVRGFLAFARDMRANWEEQVLQVEGRPDAEEQSVALITIHAAKGLEWPVVIPINM 60 ++RAYDVRG AFARDMRANWEE V QVEGRPDAEEQS++LIT+H+AKGLEW VVIP+NM Sbjct: 727 LARAYDVRGLRAFARDMRANWEETVRQVEGRPDAEEQSISLITVHSAKGLEWSVVIPLNM 786 Query: 61 TGAPKSETGIMHNRRSREFAAPVLGIEPAGYPQLKSWNELELARERVRLWYVAATRARDL 120 TG P+SE+G+ ++R S F+ PVLG +P Y +KS N +E ARERVRLWYVA TRARDL Sbjct: 787 TGKPQSESGLAYDRSSNRFSIPVLGNDPPDYDGIKSKNVVESARERVRLWYVATTRARDL 846 Query: 121 LILPRHSAQLSDKSWARLVDLGLPALPAIEPTDLGTEKAAPSTPEENKQSAELFGEQAGK 180 LILPRHSA+L++ SW R+V+LGL LPA++ LG AP+ EN Q+ E+F +A + Sbjct: 847 LILPRHSAKLAEDSWTRIVELGLEHLPALDGAALGAPGQAPAKSGENLQTREIFAAEASR 906 Query: 181 ISEVYHTIVWNRPSRHEVQAPPQAGGERIFSDPEQVHSTPASVEVLGSAARGTILHKLME 240 I + W RPSR E+ P Q+G E V P+ V+GS+ RG ILHKL+E Sbjct: 907 ILADRKAVTWRRPSRAELD-PHQSGNVEAAVASEAVEIPPSV--VVGSSTRGVILHKLIE 963 Query: 241 EVLTGETPDASAELERRSIELLSQLGLEPSQNPSEGISPAELASTVSRSLNLPAVAALRG 300 E+L+GET D LE R+ ELL+Q+G +QN GISPAEL++TV R+L L + LR Sbjct: 964 EILSGETQDTLERLEIRAGELLTQIGSGAAQNTQAGISPAELSATVMRTLALSEIKELRH 1023 Query: 301 SLDPEEIVLGCDRTGTTETLISGVIDATSRDGDGRISVVVDWKSDVALDQSRLAAYGDQL 360 L E V GC T ETLISG+ DA + D G I VV+DWKSDVA D + L Y Q+ Sbjct: 1024 RLVAELPVFGCSITVDGETLISGLADAVALDESGAIDVVIDWKSDVAPDVAALDHYRQQI 1083 Query: 361 RHYRNQTGAARALLVLMTSERVLDI 385 YR Q A RAL+VLMTS +V+++ Sbjct: 1084 GDYRKQMNAKRALVVLMTSGKVIEV 1108 >ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 1115 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 192/389 (49%), Positives = 247/389 (63%), Gaps = 13/389 (3%) Query: 1 MSRAYDVRGFLAFARDMRANWEEQVLQVEGRPDAEEQSVALITIHAAKGLEWPVVIPINM 60 +RAYDVRG AF+RDM A WE+ Q EGRPDAEE+SV+LIT+HAAKGLEWPVVIPINM Sbjct: 731 FARAYDVRGLRAFSRDMTAKWEDDEDQAEGRPDAEEESVSLITVHAAKGLEWPVVIPINM 790 Query: 61 TGAPKSETGIMHNRRSREFAAPVLGIEPAGYPQLKSWNELELARERVRLWYVAATRARDL 120 TG P + +M +R + F+ PVLG EP+ Y +K+ N LE RERVRLWYV TR+RDL Sbjct: 791 TGKPFAGGVLMQDRPNSRFSIPVLGTEPSDYAAMKTMNALERDRERVRLWYVGVTRSRDL 850 Query: 121 LILPRHSAQLSDKSWARLVDLGLPALPAIEPTDLGTEKAAPSTPEENKQSAELFGEQAGK 180 L+LPRH+ +L + WA LVDL + ALPA++P G + E N+Q+ E+F +AG+ Sbjct: 851 LVLPRHT-ELPKECWATLVDLDVGALPAVDPESFGPAGTRAARIEANEQTREIFAAEAGR 909 Query: 181 ISEVYHTIVWNRPSRHEVQAPPQAGGERI-FSDPEQVHSTPASVE---VLGSAARGTILH 236 I IVW +PSR EV + RI S+P PA VE V+GSA RG ILH Sbjct: 910 IFAAREKIVWRQPSRSEVDGEGEKPDIRIDHSEP----PGPAEVEKPVVVGSAQRGVILH 965 Query: 237 KLMEEVLTGETPDASAELERRSIELLSQLGLEPSQNPSEGISPAELASTVSRSLNLPAVA 296 KLMEE++ GE + +E+E R+ L LG+EP+ P P ELA+TV ++L LPA+ Sbjct: 966 KLMEEIINGEVGEHMSEIESRAALLKQHLGIEPTAEP----QPVELAATVLKTLALPAIK 1021 Query: 297 ALRGSLDPEEIVLGCDRTGTTETLISGVIDATSRDGDGRISVVVDWKSDVALDQSRLAAY 356 ALR + E V G E LISG +D + D G I VVVDWKSDV + + Y Sbjct: 1022 ALRPRMVAELPVFGSVAGADEEVLISGQVDVVALDDAGEIDVVVDWKSDVDPSAAAVDHY 1081 Query: 357 GDQLRHYRNQTGAARALLVLMTSERVLDI 385 Q+ YR TGA +ALLV MT+ +V++I Sbjct: 1082 RQQIGDYRRLTGAKKALLVFMTAGQVVEI 1110 >ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas palustris CGA009] emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A) [Rhodopseudomonas palustris CGA009] Length = 1133 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 227/390 (58%), Gaps = 6/390 (1%) Query: 1 MSRAYDVRGFLAFARDMRANWEEQVLQVEGRPDAEEQSVALITIHAAKGLEWPVVIPIN- 59 ++ ++ VRG AFA M A W ++ VEGRPDA+E++VAL T+HAAKGLEWP+V+PIN Sbjct: 736 LTTSFAVRGLRAFAETMTAAWTDEARAVEGRPDAQEEAVALYTMHAAKGLEWPIVVPINT 795 Query: 60 MTGAPKSETGIMHNRRSREFAAPVLGIEPAGYPQLKSWNELELARERVRLWYVAATRARD 119 MTG E+ + +R S F PV G++P GY + + EL RER+RLWYVAATRAR+ Sbjct: 796 MTGIMAPESAVT-DRDSDTFYCPVFGVKPVGYDAARDAEKAELDRERIRLWYVAATRARE 854 Query: 120 LLILPRHSAQLSDKSWARLVDLGLPALPAIEPTDLGTEKAAPSTPEENKQSAELFGEQAG 179 LL+LPR A S +W L+DL L LPA++ + L E + E N Q+ + F +A Sbjct: 855 LLVLPRLDAAQSKSAWISLLDLSLAELPALDLSHLPPELDLAAGGEANDQTRDDFAAEAA 914 Query: 180 KISEVYHTIVWNRPSRHE-VQAP---PQAGGERIFSDPEQVHSTPASVEVLGSAARGTIL 235 I ++W PSR E P P+A S+ Q V G RG IL Sbjct: 915 SIVARQRRLIWLAPSRDESADGPVLTPEAAEIWAASEAGQPDDEAVRPNVQGGRERGLIL 974 Query: 236 HKLMEEVLTGETPDASAELERRSIELLSQLGLEPSQNPSEGISPAELASTVSRSLNLPAV 295 HKL+EEVLTGETPD + L R+ L+ ++G +PS+G+SP ELA V R+L LP + Sbjct: 975 HKLLEEVLTGETPDDAGALSERARALIGEIGRPVMADPSQGLSPDELAGCVVRTLALPEI 1034 Query: 296 AALRGSLDPEEIVLGCDRTGTTETLISGVIDATSRDGDGRISVVVDWKSDVALDQSRLAA 355 A LR +L PE V E G+ DATS D G+ +VV+DWKSDV L Sbjct: 1035 AELRPTLVPELAVYAAVDVDGVEQATVGIADATSFDIAGKPTVVIDWKSDVQPTAETLNH 1094 Query: 356 YGDQLRHYRNQTGAARALLVLMTSERVLDI 385 Y Q+R Y + TG R L+VL+T+ +V+ + Sbjct: 1095 YRAQVRAYLDMTGTDRGLIVLVTTGQVIAV 1124 >gb|EGP54043.1| UvrD/REP helicase [Agrobacterium tumefaciens F2] Length = 1131 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 170/391 (43%), Positives = 226/391 (57%), Gaps = 6/391 (1%) Query: 1 MSRAYDVRGFLAFARDMRANWEEQVLQVEGRPDAEEQSVALITIHAAKGLEWPVVIPIN- 59 +S +Y VRG AF+ M A W ++ VEGRPDA+E++VAL T+HAAKGLEWPVVIPIN Sbjct: 734 LSNSYAVRGLRAFSEAMTAAWTDEARAVEGRPDAQEEAVALFTMHAAKGLEWPVVIPINT 793 Query: 60 MTGAPKSETGIMHNRRSREFAAPVLGIEPAGYPQLKSWNELELARERVRLWYVAATRARD 119 MTG ++ ++ +R++ F PVLG+ P+GY + + EL RERVRLWYVAATRAR+ Sbjct: 794 MTGVMAPDSAVI-DRQNDTFYCPVLGVPPSGYDTARQAEKAELDRERVRLWYVAATRARE 852 Query: 120 LLILPRHSAQLSDKSWARLVDLGLPALPAIEPTDLGTEKAAPSTPEENKQSAELFGEQAG 179 LLILPR S +W LVDL L L A++ + L + + N Q+ E F +A Sbjct: 853 LLILPRLDVAPSKSAWISLVDLSLAGLAALDVSHLPPDPVVVADGHSNSQTRESFAAEAS 912 Query: 180 KISEVYHTIVWNRPSRHEVQAPPQAGGER----IFSDPEQVHSTPASVEVLGSAARGTIL 235 I++ + W PSR E A E+ SD AS V G RG +L Sbjct: 913 AIADQQIRLKWLAPSRDENAAGTVLQEEQADIWTGSDDNTPPELVASSTVQGGRERGLVL 972 Query: 236 HKLMEEVLTGETPDASAELERRSIELLSQLGLEPSQNPSEGISPAELASTVSRSLNLPAV 295 HKLMEEVL GET D+ A L R+ EL+ LG+ P +P+ G+SP ELA V R+L LP + Sbjct: 973 HKLMEEVLNGETGDSHAALSARAGELVRALGIVPVADPTAGLSPEELAGCVGRTLRLPEI 1032 Query: 296 AALRGSLDPEEIVLGCDRTGTTETLISGVIDATSRDGDGRISVVVDWKSDVALDQSRLAA 355 AALR +L E V +G+ DA + G ++V+DWKSDV D L Sbjct: 1033 AALRPALSAEFPVYALREEDAELVATAGIADALTVGPGGTPAMVIDWKSDVNADPKTLDH 1092 Query: 356 YGDQLRHYRNQTGAARALLVLMTSERVLDIK 386 Y Q+R Y TGA + L+VLMTS V+ ++ Sbjct: 1093 YRAQVRAYLEMTGAEQGLIVLMTSATVIAVR 1123 >ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] Length = 1130 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/390 (44%), Positives = 227/390 (58%), Gaps = 6/390 (1%) Query: 1 MSRAYDVRGFLAFARDMRANWEEQVLQVEGRPDAEEQSVALITIHAAKGLEWPVVIPIN- 59 +S Y VRG AFA M + W ++ VEGRPDA+E++VAL T+HAAKGLEWP+VIP+N Sbjct: 733 LSTGYAVRGLRAFAEAMTSAWSDEARAVEGRPDAQEEAVALFTMHAAKGLEWPIVIPVNT 792 Query: 60 MTGAPKSETGIMHNRRSREFAAPVLGIEPAGYPQLKSWNELELARERVRLWYVAATRARD 119 MTG +E+ ++ +R++ F PVLG+ P GY + + EL RER+RLWYVAATRAR+ Sbjct: 793 MTGVIAAESAVI-DRQTETFYCPVLGVTPEGYETARQAEKEELDRERIRLWYVAATRARE 851 Query: 120 LLILPRHSAQLSDKSWARLVDLGLPALPAIEPTDLGTEKAAPSTPEENKQSAELFGEQAG 179 LL+LPR S +W LVDL L LP ++ + L + A S E+N Q+ F +A Sbjct: 852 LLVLPRLDTTPSKSAWIGLVDLSLADLPGLDVSRLPAGRTAASAGEDNTQTRASFAAEAE 911 Query: 180 KISEVYHTIVWNRPSRHEVQAPPQAGGER----IFSDPEQVHSTPASVEVLGSAARGTIL 235 I+ + W PSR E A E S +Q A+ V G RG IL Sbjct: 912 TIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSADDQRPELEAAALVQGGRERGLIL 971 Query: 236 HKLMEEVLTGETPDASAELERRSIELLSQLGLEPSQNPSEGISPAELASTVSRSLNLPAV 295 HKLMEEVLTGET +A A L R+ +L+ LG P +P+ G+S ELA+ V R+L LP + Sbjct: 972 HKLMEEVLTGETAEAEAALTERAADLIRALGQAPVADPATGLSAEELAACVVRTLALPDI 1031 Query: 296 AALRGSLDPEEIVLGCDRTGTTETLISGVIDATSRDGDGRISVVVDWKSDVALDQSRLAA 355 AALR L E V + ET +G+ DA + DGR VVVDWKSDV + L Sbjct: 1032 AALRPGLLAEFPVYAAQSSDGVETATAGIADALTVGEDGRPVVVVDWKSDVNPEAQTLDH 1091 Query: 356 YGDQLRHYRNQTGAARALLVLMTSERVLDI 385 Y Q+ Y + TGA R L+VLMT V+ + Sbjct: 1092 YRAQVSAYLDMTGAERGLIVLMTRGMVIAV 1121