BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0007.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01044744.1| hypothetical protein NB311A_04419 [Nitrobacte...   179   1e-43
ref|ZP_04763890.1| conserved hypothetical protein [Acidovorax de...   137   6e-31
ref|YP_004387516.1| hypothetical protein Alide2_1608 [Alicycliph...   134   6e-30
ref|YP_585179.1| hypothetical protein Rmet_3038 [Cupriavidus met...   133   1e-29
ref|ZP_03573807.1| conserved hypothetical protein [Burkholderia ...   133   1e-29

>ref|ZP_01044744.1| hypothetical protein NB311A_04419 [Nitrobacter sp. Nb-311A]
 gb|EAQ37525.1| hypothetical protein NB311A_04419 [Nitrobacter sp. Nb-311A]
          Length = 113

 Score =  179 bits (453), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/113 (76%), Positives = 95/113 (84%)

Query: 1   MTDIDLLTVEDRVRLLVNALADERDPFPVVKLFTPDAGATWLISEADPDEPDRLFGLCDL 60
           M + DLLTVEDRV LLVNAL DERDPFPVVKLFTPDAGATWL++E DPDEPDR FGLCDL
Sbjct: 1   MAETDLLTVEDRVALLVNALVDERDPFPVVKLFTPDAGATWLLTECDPDEPDRFFGLCDL 60

Query: 61  SLGHPELGWVHLAEIMEVRGPLGLPVERDLHFTADKPISAYAAEARAKGRIVA 113
            LG PE+G+V L EIM + GPLGLPVERDLHF A K ++ YA EAR KGRIVA
Sbjct: 61  GLGCPEIGYVSLTEIMSIPGPLGLPVERDLHFVACKSLTTYADEARIKGRIVA 113


>ref|ZP_04763890.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gb|EER59316.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 115

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 82/112 (73%), Gaps = 4/112 (3%)

Query: 6   LLTVEDRVRLLVNALA----DERDPFPVVKLFTPDAGATWLISEADPDEPDRLFGLCDLS 61
           L+T E R +LL N       D  DP PVVKLFTPDAGATWL++E DPD+ D +FGLCDL 
Sbjct: 4   LITDEQRAQLLANGRQSLEQDNFDPAPVVKLFTPDAGATWLLTEMDPDDHDHVFGLCDLG 63

Query: 62  LGHPELGWVHLAEIMEVRGPLGLPVERDLHFTADKPISAYAAEARAKGRIVA 113
           LG+PELGWV LAE+  VRG LGLPVERDL+FT  K +S YA EA   GRIVA
Sbjct: 64  LGYPELGWVSLAELATVRGRLGLPVERDLYFTPLKRLSVYAREAGLAGRIVA 115


>ref|YP_004387516.1| hypothetical protein Alide2_1608 [Alicycliphilus denitrificans
           K601]
 dbj|BAJ72216.1| hypothetical protein [Acidovorax sp. KKS102]
 gb|AEB84000.1| hypothetical protein Alide2_1608 [Alicycliphilus denitrificans
           K601]
          Length = 116

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 81/111 (72%), Gaps = 4/111 (3%)

Query: 6   LLTVEDRVRLLVNALAD----ERDPFPVVKLFTPDAGATWLISEADPDEPDRLFGLCDLS 61
           L+T E R+ LL N        + DP PVVKLFTPDAGATWL++E DPD+ D  FGLCDL 
Sbjct: 5   LITDEQRIVLLANGRESLENPDFDPAPVVKLFTPDAGATWLLTEIDPDDHDHAFGLCDLG 64

Query: 62  LGHPELGWVHLAEIMEVRGPLGLPVERDLHFTADKPISAYAAEARAKGRIV 112
           LG PE+GWV L E+  VRG LGLPVERDLHF A+K +SAYA +AR  GRI+
Sbjct: 65  LGMPEIGWVSLQELAAVRGRLGLPVERDLHFRAEKRLSAYARDARLAGRII 115


>ref|YP_585179.1| hypothetical protein Rmet_3038 [Cupriavidus metallidurans CH34]
 ref|YP_001900167.1| hypothetical protein Rpic_2608 [Ralstonia pickettii 12J]
 ref|ZP_03543770.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gb|ABF09910.1| conserved hypothetical protein (belongs to CMGI-4) [Cupriavidus
           metallidurans CH34]
 gb|ACD27735.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gb|EED68056.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 116

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 81/111 (72%), Gaps = 4/111 (3%)

Query: 6   LLTVEDRVRLLVNALAD----ERDPFPVVKLFTPDAGATWLISEADPDEPDRLFGLCDLS 61
            +T E R+ LL N        + DP PVVKLFTPDAGATWL++E DPD+ D  FGLCDL 
Sbjct: 5   FITDEQRIVLLANGRESLENPDFDPAPVVKLFTPDAGATWLLTEIDPDDHDHAFGLCDLG 64

Query: 62  LGHPELGWVHLAEIMEVRGPLGLPVERDLHFTADKPISAYAAEARAKGRIV 112
           LG PE+GWV L+E+  VRG LGLPVERDLHF A+K +SAYA +AR  GR+V
Sbjct: 65  LGMPEIGWVSLSELATVRGRLGLPVERDLHFRAEKRLSAYARDARLAGRVV 115


>ref|ZP_03573807.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 ref|ZP_03579973.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE05472.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE11744.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 115

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 80/111 (72%), Gaps = 4/111 (3%)

Query: 6   LLTVEDRVRLLVNALAD----ERDPFPVVKLFTPDAGATWLISEADPDEPDRLFGLCDLS 61
           L+T E R  LL N        + DP PVVKLFTPDAGATWL++E DPD+ D  FGLCDL 
Sbjct: 4   LITDEQRFLLLANGRESLENPDFDPAPVVKLFTPDAGATWLLTEIDPDDHDHAFGLCDLG 63

Query: 62  LGHPELGWVHLAEIMEVRGPLGLPVERDLHFTADKPISAYAAEARAKGRIV 112
           LG PELGWV L E+  VRG LGLP+ERDLHF A+K +SAYA +AR  G+IV
Sbjct: 64  LGEPELGWVSLQELASVRGRLGLPIERDLHFRAEKRLSAYARDARRAGQIV 114