BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0006.p (397 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01044745.1| hypothetical protein NB311A_04424 [Nitrobacte... 352 9e-95 ref|YP_001768441.1| hypothetical protein M446_1502 [Methylobacte... 217 3e-54 ref|YP_002423444.1| hypothetical protein Mchl_4742 [Methylobacte... 159 1e-36 ref|YP_001415133.1| hypothetical protein Xaut_0217 [Xanthobacter... 155 1e-35 ref|YP_003070789.1| hypothetical protein METDI5367 [Methylobacte... 152 1e-34 >ref|ZP_01044745.1| hypothetical protein NB311A_04424 [Nitrobacter sp. Nb-311A] gb|EAQ37526.1| hypothetical protein NB311A_04424 [Nitrobacter sp. Nb-311A] Length = 336 Score = 352 bits (902), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 186/328 (56%), Positives = 241/328 (73%), Gaps = 10/328 (3%) Query: 62 MRDNDIPNAITEGEPSSHLASYLRADAAEEGKNFLNPDIHLLALRDLLLLREEDAAVDED 121 M D IP+A + E +HL SYLRADAAE G NF++P +HLLALR+ LLLRE+DAAVDED Sbjct: 1 MHDQGIPSADVK-EHGAHLGSYLRADAAETGLNFISPQVHLLALREFLLLREDDAAVDED 59 Query: 122 RLLMNSVSSMPATLNCLGPLALNLKLASRVFKQLLPDFVHAVDRIIFEHSPGRRNEKYLS 181 RL+ N+++SM N GPLAL+ KLA+ VF+QLLP+FVH+V+RI FEHSPGRR+E++L+ Sbjct: 60 RLMTNTLTSMCLVANAFGPLALDTKLATNVFRQLLPEFVHSVERIAFEHSPGRRDERFLA 119 Query: 182 DRSAFDAAVFVKTPEQGKGVIYLELKYTESLDHATKPWKPRQLEALREVCLYKVPDSPIL 241 DR+AFD A+ V TP+ ++Y+E+KY+E + + W+ R EAL+EV LYK P+S IL Sbjct: 120 DRTAFDVAIHVTTPDGESAIVYVEVKYSEEPTNVAR-WRDRYSEALKEVRLYKDPESAIL 178 Query: 242 HSGPCEQLTREHMTAQLAVRNGAVPRACFVGIGPSLNRRVQAAFRVYSNELLPLDPADGS 301 + EQL REH AQLAV +G PRA FVG+GP LNRRV AAFRVY++ELLPL D + Sbjct: 179 RAPLIEQLMREHCVAQLAVDHGITPRAMFVGVGPRLNRRVDAAFRVYASELLPLSEDDPT 238 Query: 302 QVPFHHFTLEAFIDAIDVAGDRDTADRLWQRYCNFQRIYDAALNVLAPRL----SPNVTA 357 +V F HFTLE FIDAIDVAGDR+TA++LW+RYC+FQR+YDAAL V+ ++ +PN T Sbjct: 239 RVRFQHFTLETFIDAIDVAGDRETAEQLWKRYCDFQRVYDAALAVIVAKVPGSETPNSTT 298 Query: 358 RTSQAARNEGGAGGPRKPAAQTDHVSSG 385 TS A + PRK ++T H G Sbjct: 299 ATSVAKSKK----RPRKAGSRTRHTQPG 322 >ref|YP_001768441.1| hypothetical protein M446_1502 [Methylobacterium sp. 4-46] gb|ACA16007.1| hypothetical protein M446_1502 [Methylobacterium sp. 4-46] Length = 444 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 181/327 (55%), Gaps = 11/327 (3%) Query: 26 LARTPWVPERLLEQFGGTCEIDSRFRRAARMLQILWMRDN-DIPNAI--TEGEPS---SH 79 L R P +PE LL Q D+RFR AAR+ Q LW +P + T G + + Sbjct: 20 LTRAPLIPEALLRQHACFILTDTRFRAAARLRQSLWRESVLGLPAGLHCTGGSRAVVPAL 79 Query: 80 LASYLRADAAEEGKNFLNPDIHLLALRDLLLLREEDAAVDEDRLLMNSVSSMPATLNCLG 139 L S LR A G NF++ +H R L+L REE A V DRL N +SS T N Sbjct: 80 LGSTLRPADAANGLNFISSTVHQFVRRSLVL-REEGALVHYDRLHRNLLSSEALTYNLFA 138 Query: 140 PLALNLKLASRVFKQLLPDFVHAVDRIIFEHSPGRRNEKYLSDRSAFDAAVFVKTPEQGK 199 PLAL+L LA+ VF+QLLP FV V I FE SPGR + +YL+D +AFDAA+ V TPE + Sbjct: 139 PLALDLDLATAVFRQLLPAFVTRVTGIRFETSPGRHDPRYLNDGTAFDAALTVITPEGER 198 Query: 200 GVIYLELKYTESLDHATKPWKPRQLEALREVCLYKVPDSPILHSGPCEQLTREHMTAQLA 259 +++E+KY E A +PR EA RE L+ PDSP L S EQ R H+ AQLA Sbjct: 199 ATVFIEVKYGEGCTGAAATHRPRYDEASREAALHHDPDSPALRSTLLEQFWRLHLLAQLA 258 Query: 260 VRNGAVPRACFVGIGPSLNRRVQAAFRVYSNELLPLDPADGS--QVPFHHFTLEAFIDAI 317 VR+G PRA + + P LNRRV AA +Y+ +L DP S F TLE+F+ A+ Sbjct: 259 VRHGVTPRAHLLVLAPQLNRRVSAATSIYTTQL--TDPGGSSPATTGFSALTLESFVSAL 316 Query: 318 DVAGDRDTADRLWQRYCNFQRIYDAAL 344 AG A LW RY + + + D L Sbjct: 317 AQAGGGAEAGYLWHRYLDLRPVLDLVL 343 >ref|YP_002423444.1| hypothetical protein Mchl_4742 [Methylobacterium chloromethanicum CM4] gb|ACK85516.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 404 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 152/314 (48%), Gaps = 9/314 (2%) Query: 28 RTPWVPERLLEQFGGTCEIDSRFRRAARMLQILWMRDNDIPNAITEGEPSSH----LASY 83 R P +PE + D RF+ AAR +Q LW D + I H L S Sbjct: 35 RVPLIPEAARRRHRVFVPADHRFKAAARFMQALWREDRGLAIGIHIDRREPHRPRRLGSR 94 Query: 84 LRADAAEEGKNFLNPDIHLLALRDLLLLREEDAAVDEDRLLMNSVSSMPATLNCLGPLAL 143 + A G NFL+PDI + R L RE AA D DRL N +SS P N GPLA Sbjct: 95 ISTAAGALGANFLHPDIVPVVTR-ALAYREPGAAYDIDRLTTNLLSSQPLAFNLFGPLAR 153 Query: 144 NLKLASRVFKQLLPDFVHAVDRIIFEHSPGRRNEKYLSDRSAFDAAVFVKTPEQGKGVIY 203 + +LA+R +LLP + +V I+FEHSPGR + ++ +DR+A+D + + + ++ Sbjct: 154 DPQLATRFAVELLPGTLTSVTDILFEHSPGRGDPRFTADRTAYDVVLRGRNATGARAIVC 213 Query: 204 LELKYTESLDHATKPWKPRQLEALREV-CLYKVPDSPILHSGPCEQLTREHMTAQLAVRN 262 +E+KY+E+ + P PR + R L+ P P L C+QL R+H A + Sbjct: 214 IEVKYSEAGNEFAPPPHPRHTQIARTTPGLFVDPGDPTLTGPVCQQLYRQHCLASAMLTA 273 Query: 263 GAVPRACFVGIGPSLNRRVQAAFRVYSNELLPLDPADGSQVPFHHFTLEAFIDAIDVAGD 322 G A I P+ N A Y+ +L DP GS +PF TLE A+ AG Sbjct: 274 GLADTATLAFIAPTHNHLAHTAATAYTRQL--TDPQAGS-IPFVPLTLEHAFVAMATAGL 330 Query: 323 RDTADRLWQRYCNF 336 D A L +RY ++ Sbjct: 331 PDHARALHRRYTDW 344 >ref|YP_001415133.1| hypothetical protein Xaut_0217 [Xanthobacter autotrophicus Py2] gb|ABS65476.1| hypothetical protein Xaut_0217 [Xanthobacter autotrophicus Py2] Length = 336 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/317 (35%), Positives = 155/317 (48%), Gaps = 8/317 (2%) Query: 27 ARTPWVPERLLEQFGGTCEIDSRFRRAARMLQILWMRDNDIPNAITEGEPSSH--LASYL 84 A P VP +L +F D+RF AR+LQ W + + S L S L Sbjct: 13 ATLPVVPRDVLRRFHVDEPSDTRFACCARLLQSTWREMCGMKPGLHRSRSGSQRVLGSRL 72 Query: 85 RADAAEEGKNFLNPDIHLLALRDLLLLREEDAAVDEDRLLMNSVSSMPATLNCLGPLALN 144 A++G+NFL PDI LA R + RE A +DE RL N +SS P T N ++ Sbjct: 73 SEVDAKQGRNFLTPDIARLA-RRAVAYREYGALIDEQRLWENLLSSQPLTFNLFALCQVD 131 Query: 145 LKLASRVFKQLLPDFVHAVDRIIFEHSPGRRNEKYLSDRSAFDAAVFVKTPEQGKGVIYL 204 + R+F++L P F V+++ FEHSPGR + +YL D +AFD V P+ I + Sbjct: 132 EERRHRLFERLFPGFFGEVEKLAFEHSPGRGDTRYLGDYTAFDLFVSGTGPDGRPAFIAI 191 Query: 205 ELKYTESLDHATKPWKPRQLEALREVCLYKVPDSPILHSGPCEQLTREHMTAQLAVRN-G 263 E+KY+E + + R E R L+ PD+P L +G QLT EH+ A L G Sbjct: 192 EVKYSEDMRQPGRSGSARYRELTRACALHLDPDAPSLLTGHLAQLTAEHLLAALIREQWG 251 Query: 264 AVPRACFVGIGPSLNRRVQAAFRVYSNELLPLDPADGSQVPFHHFTLEAFIDAIDVAGDR 323 FV I P+ NR A +Y + +L P DG V F LE I A+ AGD Sbjct: 252 QGAHGLFVTIAPAANREAWYAVELYRS-MLDRRP-DG--VSFMAIALEDVIAAVSEAGDP 307 Query: 324 DTADRLWQRYCNFQRIY 340 D + RL RY +F ++ Sbjct: 308 DLSARLHTRYTDFSPVH 324 >ref|YP_003070789.1| hypothetical protein METDI5367 [Methylobacterium extorquens DM4] emb|CAX26978.1| hypothetical protein METDI5367 [Methylobacterium extorquens DM4] Length = 411 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 153/314 (48%), Gaps = 9/314 (2%) Query: 28 RTPWVPERLLEQFGGTCEIDSRFRRAARMLQILWMRDND--IPNAITEGEPSS--HLASY 83 R P +PE + D RF+ AAR +Q LW D I + EP L S Sbjct: 42 RVPLIPEAARRRHRVFVPADHRFKAAARFMQALWREDRGLAIGTHVDRCEPHRPRRLGSR 101 Query: 84 LRADAAEEGKNFLNPDIHLLALRDLLLLREEDAAVDEDRLLMNSVSSMPATLNCLGPLAL 143 + A G NFL+ DI + R L RE AA D +RL N +SS P N G LA Sbjct: 102 ISTAAGALGSNFLHSDIVPVVTR-ALAYREPGAAYDVNRLRTNLLSSQPLAFNLFGLLAR 160 Query: 144 NLKLASRVFKQLLPDFVHAVDRIIFEHSPGRRNEKYLSDRSAFDAAVFVKTPEQGKGVIY 203 + +LA+R +LLP + +V I+FEHSPGR + ++ +DR+A+D + + + ++ Sbjct: 161 DRQLATRFVAELLPGTLTSVTDILFEHSPGRSDPRFTADRTAYDVVLRGRDATGARALLC 220 Query: 204 LELKYTESLDHATKPWKPRQLEALR-EVCLYKVPDSPILHSGPCEQLTREHMTAQLAVRN 262 +E+KY+E+ P PR E R + L+ PD P L C+QL R+H A + Sbjct: 221 IEIKYSEAGREPAPPPHPRYTEIARATLGLFVDPDDPTLTGPACQQLYRQHCLASAMLTA 280 Query: 263 GAVPRACFVGIGPSLNRRVQAAFRVYSNELLPLDPADGSQVPFHHFTLEAFIDAIDVAGD 322 G +A I P+ N AA Y+ +L DP G +PF TLE A+ AG Sbjct: 281 GLADKATLAFIAPAHNSLAHAAATTYTRQL--TDPQAGP-IPFVPLTLEHAFVALATAGL 337 Query: 323 RDTADRLWQRYCNF 336 D A L +RY ++ Sbjct: 338 PDHARALHRRYTDW 351