BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0004.p (664 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003070800.1| hypothetical protein METDI5378 [Methylobacte... 296 6e-78 ref|ZP_01044747.1| DNA polymerase III gamma and tau subunits [Ni... 286 1e-74 ref|YP_004592791.1| DNA polymerase III subunits gamma and tau [E... 133 1e-28 ref|YP_002924801.1| DNA polymerase III, tau and gamma subunits; ... 132 2e-28 ref|NP_874180.1| DNA polymerase III subunits gamma and tau [Haem... 131 5e-28 >ref|YP_003070800.1| hypothetical protein METDI5378 [Methylobacterium extorquens DM4] emb|CAX26989.1| hypothetical protein METDI5378 [Methylobacterium extorquens DM4] Length = 806 Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 221/668 (33%), Positives = 337/668 (50%), Gaps = 45/668 (6%) Query: 2 SWEQKYRPQRFSEVRGQDHAVRLLSALSAKRTLGRHLLLYGAVGSGKTSLAQLFSRALNC 61 ++ YRP F +V GQD V LS L A+ +GR +LL+GAVGSGKT+LA++++RALNC Sbjct: 99 NFADAYRPHTFKKVFGQDSVVACLSGLIARGRIGRSILLHGAVGSGKTTLARIYARALNC 158 Query: 62 NAVEHDGSPCGRCDNCC----QPRRYHFEVDVP--GRSDEDLVGWARTLVQSHSDSRVRV 115 A + SPC C+ C +P + E +V G ED+ + T + ++ R+ Sbjct: 159 EAPDPRASPCYACEACGRLGEKPIKEFEEYNVSRRGGGREDVERFLSTHDRPVHGAKYRI 218 Query: 116 LFFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKV 175 LFFDEAHAL++ + + LL +E A++F FAT+EA+ L AL SRL +L I L Sbjct: 219 LFFDEAHALTREACDLLLLPVESPQHAIRFIFATTEAERLRRALRSRLLDLLIRPLPVDR 278 Query: 176 AYDLLEYIAGRERIAYEPEALHLLIAAKPPYARDLTIALQQLHDRGG-RIDVDLVKNVYD 234 A + L A + IA+EP AL LL + Y RDL + L+++ +R R+ V V+ +D Sbjct: 279 AIEFLRQAAEKIGIAHEPGALALLAGLREGYPRDLLLGLERVWERNTPRLTVAQVRAAFD 338 Query: 235 LSVCDHIRNYCMALACGDRDLQANALRKWPAQSPEKVRWIRLFLATTYYNDVLGQLLPID 294 + + + Y ALA GD D QA + W Q+ +K+RWI+ FL Y+N++L + L +D Sbjct: 339 VDQTEVLVAYFTALADGDPDQQAEIVFGWQEQATDKIRWIQAFLLHVYHNEILARRLVVD 398 Query: 295 PLVQSMVA-VRRDFVTRLCVRFDLGDQRKAEPLMRRMLEFWSQPLPQDDDSA-ELKLLLF 352 +++++ +R V C R L D R P R+M+ FW P D++A L+L LF Sbjct: 399 GVIEAVPENLRAGIVRGFCARLGLADARDLAPFWRQMMAFWPVPETATDETALGLRLTLF 458 Query: 353 EAFVGSDLTPPIKKSRQRNRQDAERPKR------------SPAGADTLGKKNSQATSPYI 400 V + + + + DA P G + + ++ Sbjct: 459 HQLVNAGVEGEAVAAERARPTDAAAAIAQASTIAEASRGFGPPPLPRPGARVVADKAGFL 518 Query: 401 ETEEIRQVINRASFFVQHHGVPMNVVFRILVQSEVGDLERLGAEAIGGFCLELESQMGSQ 460 ++R+++N ASF VQ HG+ N F I + AI F EL +Q + Sbjct: 519 TPADVRRIVNSASFLVQEHGLLFNTAFAITPAALGVSGTASAVAAITAFRDELAAQARAW 578 Query: 461 GSNFSA-ISIIERDGGQIVGRVIAHI-----------DGAQIGS--LEGFRASWARRFGH 506 G A I+++ERD ++GR++AH+ DGA+ ++ +R R G Sbjct: 579 GGGLRAGITVLERDHRGVIGRIVAHLHAPNPLDPADADGARRTEAWVKAWREGAGRLGGD 638 Query: 507 IVHVSTCEGAEPMA--FHWQSVRELCAGITK----FDGDGSGPKDLRQLLRIPRARWRSP 560 V + E A FHW+ +LCAG+ + FD + + L +LLR+ R RS Sbjct: 639 AVEFAPAPVGERAALRFHWRRSLDLCAGLDERVEAFDPRIAEHRSLLELLRV---RARSA 695 Query: 561 GP-FSYPRTIFSGHLSDRAIAEACKYGMAPLSAFDARQWHWIYQGWELREFQDRGSEIAQ 619 P +P S LSD +A+AC+ + PLSA+D W + GWEL EFQ R A+ Sbjct: 696 RPVLDHPLVATSASLSDEQVAQACRNRLEPLSAYDDEAWEELTTGWELEEFQVRRDTRAK 755 Query: 620 RRQEVAAI 627 R +A I Sbjct: 756 REGRLAEI 763 >ref|ZP_01044747.1| DNA polymerase III gamma and tau subunits [Nitrobacter sp. Nb-311A] gb|EAQ37528.1| DNA polymerase III gamma and tau subunits [Nitrobacter sp. Nb-311A] Length = 553 Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 186/555 (33%), Positives = 269/555 (48%), Gaps = 25/555 (4%) Query: 130 NGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVAYDLLEYIAGRERI 189 LLK +EDS + F FAT++ L AAL SRL E+ + L A + LE IA RE I Sbjct: 2 TSLLKEVEDSKRGIAFAFATTDPWQLTAALRSRLLEIEVRPLDVADAVEFLESIARREGI 61 Query: 190 AYEPEALHLLIAAKPPYARDLTIALQQLHDRGGRIDVDLVKNVYDLSVCDHIRNYCMALA 249 AY+ E L LL + K + RDL L+ + G + + VK+++ + + + Y ALA Sbjct: 62 AYDREGLILLASVKQGHVRDLLGGLEHVAGAFGHVSAENVKSIFCVHHLELLVEYFQALA 121 Query: 250 CGDRDLQANALRKWPAQSPEKVRWIRLFLATTYYNDVLGQLLPIDPLVQSMVAVRRDFVT 309 GD + Q +A+RKW KV+ +R L + +YN++LGQ + ID V S+++ R V+ Sbjct: 122 AGDSEGQMSAMRKWHDPISAKVQGVRALLTSIFYNEILGQKVLIDAFVDSLISERFGIVS 181 Query: 310 RLCVRFDLGDQRKAEPLMRRMLEFWSQPLPQDDDSAELKLLLFEAFVGSDLTP------- 362 C R ++ RK E +ML FW+ D+ L L LFE V LT Sbjct: 182 GFCERLNVDSPRKLERFWEKMLSFWAGRQSMDETGLTLCLSLFENLVNRGLTDGVGLIST 241 Query: 363 --PIKKSRQRNRQDAERPKRSPAGADTLGKKNSQATSPYIETEEIRQVINRASFFVQHHG 420 PI + R +Q P + ++ T Y+ ++R+++NRASFF+QHHG Sbjct: 242 AVPIVE-RPSAQQAVWIPHVATELISERFSEDGGRTDQYLSRADVREIVNRASFFIQHHG 300 Query: 421 VPMNVVFRILVQSEVGDLERLGAEAIGGFCLELESQMGSQGSNFSAISIIERDGGQIVGR 480 MN F + ER EAI F +L+ G +++++ ERD + GR Sbjct: 301 RMMNAAFTVFPGWRAKSSERTAIEAIRQFREKLDCLCSDAGEPHASMTVYERDLDGVFGR 360 Query: 481 VIAHIDGAQIGSLEGFRASWARRFGH-------IVHVSTCE--GAEPMAFHWQSVRELCA 531 ++AH+ + A W F + C+ + + FHW V LC Sbjct: 361 IVAHVPQIVDPNFATVLADWCNGFNEDNSEGPFVEWDQKCDPKNSTSLTFHWDRVLALCG 420 Query: 532 GITKFDGDGSGPKDLRQLLRIPRARWRSPGPFSYPRTIFSGHLSDRAIAEACKYGMAPLS 591 DG G L L+IPR R GP P FSG L+ +I ++C M PLS Sbjct: 421 SFYD-DGVSHGACSLLDHLQIPRKIRRPSGPIRSPLLEFSGALTAESIEKSCMNNMLPLS 479 Query: 592 AFDARQWHWIYQGWELREFQDRGSEIAQRRQEVAAIE--GHGRHDPLQLERLSDVLHLWQ 649 AFDA+ W WI +GWE +EF DR E+ +RR E+A I+ G H QL + ++ W Sbjct: 480 AFDAQAWPWIRRGWEQKEFVDRQGEVNRRRDEIAKIQRLWSGDHSR-QLAEVEKLIKNWS 538 Query: 650 RMTPEQRVRRWRGWW 664 E R R WRGWW Sbjct: 539 --LAENRNRSWRGWW 551 >ref|YP_004592791.1| DNA polymerase III subunits gamma and tau [Enterobacter aerogenes KCTC 2190] gb|AEG97512.1| DNA polymerase III subunits gamma and tau [Enterobacter aerogenes KCTC 2190] Length = 635 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 135/257 (52%), Gaps = 13/257 (5%) Query: 5 QKYRPQRFSEVRGQDHAVRLLSALSAKRTLGR--HLLLY-GAVGSGKTSLAQLFSRALNC 61 +K+RPQ F++V GQ+H +L+AL+ +LGR H L+ G G GKTS+A+L ++ LNC Sbjct: 8 RKWRPQTFADVVGQEH---VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 Query: 62 NAVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVL 116 + +PCG CDNC + + F E+D R+ ED + + + R +V Sbjct: 65 ES-GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVY 123 Query: 117 FFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVA 176 DE H LS+ S N LLK +E+ PA VKF AT++ Q L ++SR + + AL + Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183 Query: 177 YDLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLVKNVYDL 235 LE+I G E+IA+EP AL LL A RD L++ Q + GR+ V + Sbjct: 184 RHQLEHILGEEQIAFEPRALQLLSRAADGSLRDALSLTDQAIASGDGRLTAQSVSEMLGT 243 Query: 236 SVCDHIRNYCMALACGD 252 D + AL D Sbjct: 244 LDDDQALSLIEALVAAD 260 >ref|YP_002924801.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gb|ACQ68653.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 640 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 15/246 (6%) Query: 3 WEQKYRPQRFSEVRGQDHAVRLLSALSAKRTLGR---HLLLYGAVGSGKTSLAQLFSRAL 59 + +K+RPQ FSEV GQ+H +L+AL +LGR LL G G GKTS+A+L ++ L Sbjct: 6 FARKWRPQTFSEVVGQEH---VLTALVNSLSLGRIHHAYLLSGTRGVGKTSIARLIAKGL 62 Query: 60 NCNAVEHDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVR 114 NC + +PCG+C +C + HF E+D R+ ED L S + R + Sbjct: 63 NCTS-GITATPCGKCIHCQGIEQGHFIDLIEIDAASRTKVEDTRELLDNLPYSPTQGRFK 121 Query: 115 VLFFDEAHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPK 174 V DE H LS+ S N LLK +E+ P+ VKF AT+E + L ++SR + + AL Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTEPKKLPVTIISRCLQFHLKALNAL 181 Query: 175 VAYDLLEYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLVKNVY 233 V + LE I E+I + EAL LL A RD L++ Q + G++ +V+ + Sbjct: 182 VILNQLEKILAAEKIDSDTEALKLLAKAASGSMRDALSLTDQAVAIGSGKVTTQIVREM- 240 Query: 234 DLSVCD 239 L++ D Sbjct: 241 -LTILD 245 >ref|NP_874180.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] gb|AAP96569.1| DNA polymerase III subunits gamma and tau [Haemophilus ducreyi 35000HP] Length = 687 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 123/255 (48%), Gaps = 7/255 (2%) Query: 6 KYRPQRFSEVRGQDHAVRLLSALSAKRTLGRHLLLYGAVGSGKTSLAQLFSRALNCNAVE 65 K+RPQRFSEV GQ H + L + L L G G GKTS+A+LF++ LNC Sbjct: 9 KWRPQRFSEVIGQQHVLSALENGLRQDKLHHAYLFSGTRGVGKTSIARLFAKGLNCE-TS 67 Query: 66 HDGSPCGRCDNCCQPRRYHF----EVDVPGRSD-EDLVGWARTLVQSHSDSRVRVLFFDE 120 +PCG+C+NC F E+D R+ ED + + R +V DE Sbjct: 68 ITATPCGKCENCKAIEEGRFIDLIEIDAASRTKVEDTRELLDNVQYKPTVGRFKVYLIDE 127 Query: 121 AHALSKASQNGLLKLIEDSPAAVKFFFATSEAQMLNAALVSRLTELSIHALTPKVAYDLL 180 H LS+ S N LLK +E+ P VKF AT++ Q L ++SR + + ALTP L Sbjct: 128 VHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCMQFHLRALTPTQLSQHL 187 Query: 181 EYIAGRERIAYEPEALHLLIAAKPPYARD-LTIALQQLHDRGGRIDVDLVKNVYDLSVCD 239 E+I +E I YE A+ L A RD L++ Q + I + +V + L D Sbjct: 188 EFILTQENIPYELAAIEKLAKAAQGSIRDSLSLTDQAIAVSNTNITLPIVSEMLGLIDDD 247 Query: 240 HIRNYCMALACGDRD 254 MALA + D Sbjct: 248 QPLELVMALAQANGD 262