BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0002.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533771.1| superfamily I DNA/RNA helicase [Rhodopseudomona... 278 1e-72 emb|CAD31257.1| PUTATIVE HELICASE PROTEIN ATP-BINDING [Mesorhizo... 184 1e-44 ref|ZP_07025969.1| superfamily I DNA/RNA helicase [Afipia sp. 1N... 164 2e-38 ref|YP_001683891.1| superfamily I DNA/RNA helicase [Caulobacter ... 130 2e-28 ref|ZP_07658597.1| putative helicase protein ATP-binding [Roseib... 121 1e-25 >ref|YP_533771.1| superfamily I DNA/RNA helicase [Rhodopseudomonas palustris BisB18] gb|ABD89452.1| Superfamily I DNA and RNA helicases and helicase subunits-like [Rhodopseudomonas palustris BisB18] Length = 1190 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 148/285 (51%), Positives = 192/285 (67%), Gaps = 11/285 (3%) Query: 1 MPSTLKKLRP--LTDQFDLGDQYLSAPGGEPLKSAIISAHDKRDDQPVVLKYWQKTGSAV 58 MP T K +P L ++F L + +LS+P LKSA+I A D+R PVVLKYW+KTG+AV Sbjct: 1 MPPTHAKRQPDTLAERFALEETFLSSPNTAALKSAVIRAIDRRTGDPVVLKYWEKTGTAV 60 Query: 59 DDDLREIWQHEMRQAQRVLAYPGADKVIVELLRYGEASDAFFLAMPRDLAPLDTMVKHAR 118 D D RE+W+HEMRQ++RV AYP AD+V+VE+L GE+ DAF++ MP D+APL+ + R Sbjct: 61 DTDFRELWRHEMRQSERVRAYPRADEVVVEVLASGESDDAFYIVMPSDVAPLEHASRFVR 120 Query: 119 PDHWLNNLDVPRSRIVLWRNAERLAKALEAVHNQGLVYGRLDSSSVF-TASATAPDFRLG 177 PDHWL L PR R +LW+N RLA++L AVH QGLV+GR+D +V+ T +AT PDFRLG Sbjct: 121 PDHWLRALQGPRQRALLWKNLRRLAESLGAVHGQGLVHGRIDGRAVYSTGAATTPDFRLG 180 Query: 178 SFEWCVRLSEADKAPLVVFAKS-AGAPIIMSFLDDWRALGLLLAGLLKLDASSLSRGLSA 236 FE+C+R++E +KAPL V AKS +I SFLDDWRALG + A L+ LDA L Sbjct: 181 GFEFCLRVAELNKAPLHVIAKSRPVGSVIFSFLDDWRALGQVGADLIGLDADKLE----- 235 Query: 237 VENESDAAGERLAV-LEAGERDTLRWLIEPARHRAVDAEIVCRRI 280 E E R + L A E D +R L EP R+R +DA V RI Sbjct: 236 -EEEIQFIEGRAKIDLRASEIDLIRLLFEPERNRILDAATVTSRI 279 >emb|CAD31257.1| PUTATIVE HELICASE PROTEIN ATP-BINDING [Mesorhizobium loti R7A] Length = 1193 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 148/271 (54%), Gaps = 7/271 (2%) Query: 11 LTDQFDLGDQYLSAPGGEPLKSAIISAHDKRDDQPVVLKYWQKTGSAVDDDLREIWQHEM 70 L D F L + YL P E L+ +I+A K + LK W K G D + RE+W HE Sbjct: 10 LEDTFSLSEDYLQRPQVEELRPGLITAVVKETGEDRTLKIWWKAGDQADGEFRELWNHER 69 Query: 71 RQAQRVLAYPGADKVIVELLRYGEASDAFFLAMPRDLAPLDTMVKHARPDHWLNNLDVPR 130 Q RV+ YP AD+V+VE++ E +D+F + PL ++ HWL LD+ Sbjct: 70 LQVDRVMNYPDADEVMVEIIEMIETADSFCVVYEAAATPLAARLRTLSSRHWLKGLDIVS 129 Query: 131 SRIVLWRNAERLAKALEAVHNQGLVYGRLDSSSVFTASATAPDFRLGSFEWCVRLSEADK 190 +R +LW N RLAKA+ +H +GLV+GRLD +VFT + + DF+LG FEWCV + EA Sbjct: 130 NRAILWSNLSRLAKAIGLLHARGLVHGRLDRHAVFTNGSNSADFKLGGFEWCVGMGEAKP 189 Query: 191 A-PLVVFAKSAGAPIIMSFLDDWRALGLLLAGLLKLDASSLSRGLSAVENESDAAGERLA 249 P++ A++ +I S+ DDW+ALG L A +L +D + L ++ G + Sbjct: 190 LDPMLAKARARIDRLIYSYGDDWKALGALFADILGVDVTRLR------SDDPFQRGRPVI 243 Query: 250 VLEAGERDTLRWLIEPARHRAVDAEIVCRRI 280 L GE D LR L +P R A DA V R + Sbjct: 244 DLSEGEIDFLRRLTDPHREDAADARWVMRSV 274 >ref|ZP_07025969.1| superfamily I DNA/RNA helicase [Afipia sp. 1NLS2] gb|EFI53111.1| superfamily I DNA/RNA helicase [Afipia sp. 1NLS2] Length = 1191 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 148/274 (54%), Gaps = 15/274 (5%) Query: 11 LTDQFDLGDQYLSAPGGEPLKSAIISAHDKRDDQPVVLKYWQKTGSAVDDDLREIWQHEM 70 L D+FD ++ L +AI +K + LK W+KTG VD+DLR++W HEM Sbjct: 14 LEDRFDFIGDGVAVGERASLGTAIFDVEEKSTGAELSLKLWRKTGKPVDEDLRQLWLHEM 73 Query: 71 RQAQRVLAYPGADKVIVELLRYGEASDAFFLAMPRDLAPLDTMVKHARPDHWLNNLDVPR 130 RQ QRV++Y GA V+V+++ + E F + + R PL K HWL+NL PR Sbjct: 74 RQVQRVMSYAGARDVVVDVMEFVEDDREFGVLLERVGQPLSERRKRVSRQHWLHNLGAPR 133 Query: 131 SRIVLWRNAERLAKALEAVHNQGLVYGRLDSSSVFTASATAPDFRLGSFEWCVRL--SEA 188 RI+ W N +R+ +AL +H QGLV+GRL + + T A DFRLG FEW + L + A Sbjct: 134 PRILFWNNIKRVVRALGIIHAQGLVHGRLAADVIMTEGADEADFRLGGFEWSLWLAANSA 193 Query: 189 DKAPLVV----FAKSAGAPIIMSFLDDWRALGLLLAGLLKLDASSLSRGLSAVENESDAA 244 D++ + A+ AG+ SF DWRALGL++A LDA G E ++ Sbjct: 194 DRSHAKIGPDAAARRAGS---YSFEADWRALGLVVAEC--LDAEIKPSG----EVQASGK 244 Query: 245 GERLAVLEAGERDTLRWLIEPARHRAVDAEIVCR 278 G L ER ++ L+ P+R +DA+ + R Sbjct: 245 GGSSIALHVPERVLIKRLLAPSRMDQLDADSISR 278 >ref|YP_001683891.1| superfamily I DNA/RNA helicase [Caulobacter sp. K31] gb|ABZ71393.1| superfamily I DNA or RNA helicase or helicase subunit-like protein [Caulobacter sp. K31] Length = 1175 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 5 LKKLRPLTDQFDLGDQYLSAPGGEPLKSAIISAHDKRDDQPVVLKYWQKTGSAVDDDLRE 64 ++K + + L ++YL P K II A R D+ V+L+ W + + DDDL + Sbjct: 9 VRKPAKFLEGYKLHERYLLRPVPATGKPGIIEATSPRGDE-VLLRIWPRK-TRDDDDLLD 66 Query: 65 IWQHEMRQAQRVLAYPGADKVIVELLRYGEASDAFFLAM-PRDLAPLDTMVKHAR-PDHW 122 IW+HE+RQ R+ YPGA + + +L G ++ F++ + PL+ +++ R W Sbjct: 67 IWRHELRQLHRLGGYPGAQRYVARVLDAGSDAEGFYIVLDAGQRRPLELILERGRGSTEW 126 Query: 123 LNNLDVPRSRIVLWRNAERLAKALEAVHNQGLVYGRLDSSSVFTASATAPDFRLGSFEWC 182 L +L++ +R LWRN +++ + LE +HN+GLV+ LD S+ TA+ PDF+L FEW Sbjct: 127 LRSLNLSGNRYRLWRNLQQVCRGLEILHNEGLVHRNLDGWSILTAAGDDPDFQLTGFEWS 186 Query: 183 VRLSEADKAPLVVFAKSAGAPII--MSFLDDWRALGLLLAGLLKLDASSLSRGLSAVENE 240 +RLS AK A P + +SF DW L A + + S L Sbjct: 187 IRLSATSDV-----AKKARGPAVPTVSFAADWSDFARLAARIFNITPSRL---------- 231 Query: 241 SDAAGERLAVLE---AGERDTLRWLIEPARHRAVDAEIVCRRI 280 DAA +V E A E LR L+ P +D E+V RI Sbjct: 232 VDAAIPDYSVHESALASEIRLLRDLLLPTELPRLDGELVSNRI 274 >ref|ZP_07658597.1| putative helicase protein ATP-binding [Roseibium sp. TrichSKD4] gb|EFO33264.1| putative helicase protein ATP-binding [Roseibium sp. TrichSKD4] Length = 790 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 141/277 (50%), Gaps = 24/277 (8%) Query: 8 LRPLTDQFDLGDQYLSAPGGEPLKSAIISAHDKRDDQPVV-LKYWQKTGSAVDDDLREIW 66 ++ L+ +F+ + L + L+ + +D+++ L+ W+KT S +D +LR +W Sbjct: 52 MKDLSSRFEFDEDALVLGDPKTLRGTLWRVYDRKNGSAERRLRTWRKTNSDLDIELRSLW 111 Query: 67 QHEMRQAQRVLAYPGADKVIVELLRYGEASDAFFLAMPRDLAPLDTMVKHARPDHWLNNL 126 +HEMRQ R++ Y A VIV+++ E D F L + P+ + K R N Sbjct: 112 RHEMRQVSRIMRYRDAADVIVDIIEEVEDEDEFALLLADRGEPIKS-AKQRR-----NTA 165 Query: 127 DVPR--SRIVLWRNAERLAKALEAVHNQGLVYGRLDSSSVFTASATAPDFRLGSFEWCVR 184 PR RI++W+N ER+A+AL +H+Q +V+GRL +FT ++APDFRL FEW VR Sbjct: 166 TAPRGAQRILIWQNLERVARALGILHDQAIVHGRLTHECIFTEGSSAPDFRLSGFEWSVR 225 Query: 185 LS-EADKAPLVVFAKSAGAPIIMSFLDDWRALGLLLAGLLKLDASSLSRGLSAVENESDA 243 L + D P AP SF DW ALG + A LL A+ S E Sbjct: 226 LGVDTDDGPAAHSWSRFRAPC--SFYADWAALGNIAADLLCETAN-----FSTYE----- 273 Query: 244 AGERLAVLEAGERDTLRWLIEPARHRAVDAEIVCRRI 280 E + L + ER LR LI P +DA IV R I Sbjct: 274 --ESGSQLTSSERRLLRLLISPRAIEPIDARIVVREI 308