BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0027.p         (445 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771845.1| hypothetical protein bll5205 [Bradyrhizobium ja...   286   5e-75
ref|ZP_01045717.1| hypothetical protein NB311A_21146 [Nitrobacte...   244   3e-62
ref|YP_579079.1| peptidoglycan binding domain-containing protein...   164   4e-38
ref|YP_003450503.1| hypothetical protein AZL_a04280 [Azospirillu...    59   2e-06
ref|ZP_02079990.1| hypothetical protein CLOLEP_01439 [Clostridiu...    55   2e-05

>ref|NP_771845.1| hypothetical protein bll5205 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50470.1| bll5205 [Bradyrhizobium japonicum USDA 110]
          Length = 557

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 224/428 (52%), Positives = 266/428 (62%), Gaps = 60/428 (14%)

Query: 47  KTQGKADTTTGQNT-TTGQAKGASTTTGQGTTAAPNTRAGQ--TTGAA-----APQSG-T 97
           K+Q KA ++  QN+ T GQ +G    T Q    AP  +  Q  TTGA      AP  G  
Sbjct: 134 KSQDKAQSSGKQNSQTVGQGRGERDQTRQSEQKAPQGQKDQSTTTGANTRPSNAPAPGQA 193

Query: 98  TQNRMNAGQTTGQAQGQA-GTSAQSPS---NATVQTEAGR-TVTAQQQSTIQRSVLSARN 152
           TQ +   GQ + Q QG A GT A +P+   + T Q+ +GR +V AQQQ+T+Q+SVLS+RN
Sbjct: 194 TQGQTTQGQISQQNQGAATGTQATAPAQNQSTTTQSMSGRVSVNAQQQTTLQQSVLSSRN 253

Query: 153 APRVNVSTINFAVNPGVVVPRRFNVVSVAAFPALIDAFPYYRDDSFFVVEDEVVFLDRER 212
             RVN S+INF VN GVVVPR  NVVSV+AFPALID FP +RDDSFFVV+DE+V LDR R
Sbjct: 254 VARVNASSINFQVNTGVVVPRSINVVSVSAFPALIDVFPAFRDDSFFVVDDEIVVLDRSR 313

Query: 213 RVVDVVPVGPRTRFSH------RGGGGGGGSVAMMDLNPQQIREVQQVLIDRGLLVGEAD 266
           R+VDVVP GPRTRFSH       GGG  GGS A ++L+P++IR VQQVLI+R LL GEAD
Sbjct: 314 RIVDVVPAGPRTRFSHAGRIGGGGGGVSGGSAAALNLSPEEIRVVQQVLIERRLLTGEAD 373

Query: 267 GVWGSRTREALITFQRQEGITTSGSVDTRTVTALGLSDRIG-----QGAGASSTVGQSRT 321
           GV G RTREALITFQRQ+GI  SGS+D  TV+ALG+S++I         G   T  Q   
Sbjct: 374 GVLGPRTREALITFQRQQGIQASGSIDISTVSALGVSNKISATQSQTTTGQGQTSQQQPA 433

Query: 322 QQNTTGQTTDQTNAPQNQ---STGRTDTQQP-----AQQN---TTGQ-------TTGQAN 363
           QQ TTGQ T Q NAP  Q   +TG+     P     AQQN   TTGQ       TTGQA 
Sbjct: 434 QQGTTGQNTGQANAPAQQDQPTTGQAQQNPPTTTRQAQQNQPATTGQAQQNQPATTGQAQ 493

Query: 364 SPQNQ-STTSQSG-NQPSAQQQAPQQNTTGQAAPQNQSTVGQGSGNQPDAGRDTQSSQPN 421
             QNQ +TT QSG  QPS Q       TTGQAAP  Q        N P A ++  S QPN
Sbjct: 494 --QNQPATTGQSGTQQPSGQ-------TTGQAAPPPQGN------NPPAANQNMPSGQPN 538

Query: 422 QNNNPPSS 429
           Q+N P SS
Sbjct: 539 QSNPPASS 546


>ref|ZP_01045717.1| hypothetical protein NB311A_21146 [Nitrobacter sp. Nb-311A]
 gb|EAQ36485.1| hypothetical protein NB311A_21146 [Nitrobacter sp. Nb-311A]
          Length = 462

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 165/388 (42%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 16  QSQQQENRANSANRSQGTTTGQGTAQDKAQGKTQGKADTTTGQNT----TTGQAKGASTT 71
           +S++  +R N+    +  +  +  ++D+AQ + +   D T GQ+        Q++  +  
Sbjct: 57  RSERDSDRDNTHRSEESRSKQRDPSKDRAQQRDRKDKDQTVGQSKPERDNAKQSEDRTHD 116

Query: 72  TGQGTTAAPNTRAGQTTGAAAPQSGTTQNR-MNAGQTTGQAQGQAGTSA-QSPSNATVQT 129
           TG+    A N   G  +G++  Q  + Q+R +N+G     AQGQ  T   QS + A +QT
Sbjct: 117 TGKADAKADNKSNGHQSGSSGMQGQSAQDRNLNSGVDQNAAQGQTNTQGGQSQTTAGIQT 176

Query: 130 EAGRTVTAQQQSTIQRSVLSARNAPRVNVSTINFAVNPGVVVPRRFNVVSVAAFPALIDA 189
           ++G+ VTAQQQ+T+Q+SVL A NAPRVN ++INF V  G+VVP    V SV+ +PALID 
Sbjct: 177 QSGKNVTAQQQTTLQQSVLRASNAPRVNANSINFQVRSGIVVPSSVTVASVSTYPALIDV 236

Query: 190 FPYYRDDSFFVVEDEVVFLDRERRVVDVVPVGPRTRFSHRGGGGGGGS-VAMMDLNPQQI 248
           FP YRD+SFFV+ED+VV +DR+RR+VDVVPVGPR RF+  G  G  G  VA +DL P+ I
Sbjct: 237 FPAYRDNSFFVMEDDVVIVDRDRRIVDVVPVGPRARFAGGGSSGQSGGPVAAVDLPPEDI 296

Query: 249 REVQQVLIDRGLLVGEADGVWGSRTREALITFQRQEGITTSGSVDTRTVTALGLSDRI-- 306
           R +Q+VLIDRGLL G+ADGVWG  TREA+  +QRQ+GI  +G++D RTV++LG+S R+  
Sbjct: 297 RVIQRVLIDRGLLHGDADGVWGPATREAITVYQRQQGIAVTGTIDMRTVSSLGISSRLSQ 356

Query: 307 ------GQGAGASSTVGQSRTQQNTTGQTTDQTNAPQNQSTGRTDTQQPAQ-QNTTGQTT 359
                    + ++ +   + TQ       + Q   P NQ T +T  Q   Q QN    TT
Sbjct: 357 QANQSIQSQSSSTGSQTSTGTQTTAGQGQSGQMGQPSNQQTDQTSNQNAGQTQNRASSTT 416

Query: 360 GQANSPQNQSTTSQSGNQPSAQQQAPQQ 387
           GQ  S  NQS T+    QPS     P Q
Sbjct: 417 GQ--SAPNQSNTTGQAKQPSPSGTTPNQ 442


>ref|YP_579079.1| peptidoglycan binding domain-containing protein [Nitrobacter
           hamburgensis X14]
 gb|ABE64619.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14]
          Length = 522

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 149/298 (50%), Positives = 178/298 (59%), Gaps = 52/298 (17%)

Query: 146 SVLSARNAPRVNVSTINFAVNPGVVVPRRFNVVSVAAFPALIDAFPYYRDDSFFVVEDEV 205
           SVL A NAPRVNV++INF V+ GV VP   +VVSV+ +P LID FP YRD SFFVVEDEV
Sbjct: 239 SVLHAGNAPRVNVNSINFQVHTGVAVPSNVSVVSVSTYPTLIDTFPAYRDYSFFVVEDEV 298

Query: 206 VFLDRERRVVDVVPVGPRTRFSHRGGGGGGGSVAMMDLNPQQIREVQQVLIDRGLLVGEA 265
           VF+DR+RR+VDVVP GPRT FS  G G  G SVA +DL P  IR VQ+VLI+RGLL GEA
Sbjct: 299 VFVDRDRRIVDVVPAGPRTHFSGGGQGSSG-SVAAIDLPPDDIRVVQRVLIERGLLHGEA 357

Query: 266 DGVWGSRTREALITFQRQEGITTSGSVDTRTVTALGLSDRIGQGAGASSTVGQSRTQQNT 325
           DGV G  TREA+  FQRQ+GI  SGS+D RTV++LG+S R+ Q A  S  + QS T  + 
Sbjct: 358 DGVLGPETREAITVFQRQQGIQMSGSIDARTVSSLGVSGRLSQQANQSIGLSQSSTTGSQ 417

Query: 326 TGQTTDQTNAPQNQSTGRTDTQQPAQQNTTGQTTGQANSPQNQSTTSQSGNQPSAQQQAP 385
           T  T           TG+    QP++QNTTGQ                          AP
Sbjct: 418 TSTTGQGQVGTGQAQTGQP---QPSEQNTTGQ--------------------------AP 448

Query: 386 QQNTTGQA----APQNQSTVGQGSGNQPDAGRDTQSSQPNQNNNPPSSGSGQ-SPQTP 438
            QN TGQA    A QNQ +   G           QS+ PNQ+N      +GQ +PQTP
Sbjct: 449 NQN-TGQATNPPAQQNQPSTTTG-----------QSTAPNQSNT-----TGQAAPQTP 489


>ref|YP_003450503.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510]
 dbj|BAI73959.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510]
          Length = 257

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 227 SHRGGGGGGGSVAMMDLNPQQIREVQQVLIDR--GLLVGEADGVWGSRTREALITFQRQE 284
           +HR GG      A   L+ +Q+RE+QQ L DR  G  +   DGVWG+ TR AL+ FQR  
Sbjct: 131 AHRSGG-----TAAATLSHEQVREIQQALNDRTDGRDIA-VDGVWGAGTRRALMRFQRDN 184

Query: 285 GITTSGSVDTRTVTALGL 302
           G+  +G  D +T+ AL L
Sbjct: 185 GLRATGRADQQTMAALNL 202


>ref|ZP_02079990.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753]
 gb|EDO61931.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753]
          Length = 241

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 41/58 (70%)

Query: 246 QQIREVQQVLIDRGLLVGEADGVWGSRTREALITFQRQEGITTSGSVDTRTVTALGLS 303
           +++R++Q  L + GL  G  DG++GS T+ A+I FQ+Q+G+   G   T+T+TALGL+
Sbjct: 58  EEVRQIQTKLKELGLYTGSIDGIYGSGTKNAVIQFQKQQGLDPDGIAGTKTLTALGLA 115