BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0021.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_780149.1| hypothetical protein RPE_1217 [Rhodopseudomonas... 399 e-109 ref|YP_004107488.1| urea carboxylase-associated protein 2 [Rhodo... 398 e-109 ref|YP_534374.1| hypothetical protein RPC_4533 [Rhodopseudomonas... 397 e-109 ref|NP_946757.1| hypothetical protein RPA1407 [Rhodopseudomonas ... 392 e-107 ref|YP_001990594.1| urea carboxylase-associated protein 2 [Rhodo... 392 e-107 >ref|YP_780149.1| hypothetical protein RPE_1217 [Rhodopseudomonas palustris BisA53] gb|ABJ05169.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 279 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/278 (66%), Positives = 223/278 (80%), Gaps = 1/278 (0%) Query: 1 MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDADAVIHRETIPSGWY 60 MIL+E++KAE+ A+ +RY + KA GQ+ AP+ALP PT RD API DA+IHRET+P GWY Sbjct: 1 MILNEQEKAEVEANRQRYEQHKALGQQQAPKALPPPTPRDGAPIAVDAIIHRETVPGGWY 60 Query: 61 WTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDM 120 + T+LNRG+ LRIVN SG + VSL AWN++D +ERLNHADTIKVQWAA L+KGRV+LSDM Sbjct: 61 FVTKLNRGEALRIVNASGKACVSLQAWNASDPSERLNHADTIKVQWAASLRKGRVMLSDM 120 Query: 121 GRALLGITEDSSAAHDAVVGGSTAATNVAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPC 180 GR LL I +D+S AHD + GGS AA+N A+YGDG FRNTRDNFILAA KLGLDRRDVHPC Sbjct: 121 GRVLLSIIQDTSGAHDTLAGGSNAASNAARYGDG-FRNTRDNFILAAGKLGLDRRDVHPC 179 Query: 181 VSFFAPVAIDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQASVEI 240 V+ FAPV++DA+G F W +RR DFVDLRAEM+LLIALS CPHPLDP+ Y VEI Sbjct: 180 VALFAPVSVDAEGNFEWQGERRSPGDFVDLRAEMDLLIALSTCPHPLDPSPDYAPGDVEI 239 Query: 241 VRYRAAAPAADDLCRTATAEAVRAYQNNALYLGETLEG 278 VRY+A PA DDLCRTA+ EA RA++NNA YL + G Sbjct: 240 VRYQAGVPADDDLCRTASLEAKRAFENNAFYLAAGIAG 277 >ref|YP_004107488.1| urea carboxylase-associated protein 2 [Rhodopseudomonas palustris DX-1] gb|ADU42755.1| urea carboxylase-associated protein 2 [Rhodopseudomonas palustris DX-1] Length = 279 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 181/272 (66%), Positives = 222/272 (81%) Query: 1 MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDADAVIHRETIPSGWY 60 MIL+E++KAE+ A+ +RY + KA GQ+ AP+ALP PT RD API ADA+IHRET+P GWY Sbjct: 1 MILTEQEKAEVEANRQRYEQHKALGQQQAPKALPPPTPRDGAPIAADAIIHRETVPGGWY 60 Query: 61 WTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDM 120 + T+L RG+ LR+VNTSG S VS+ AWN+ D +ERLNHADTIKVQWAA L+KGRV+LSDM Sbjct: 61 YVTKLGRGEALRLVNTSGTSCVSIQAWNALDPSERLNHADTIKVQWAASLRKGRVILSDM 120 Query: 121 GRALLGITEDSSAAHDAVVGGSTAATNVAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPC 180 GRALL I ED+S AHD +VGGSTAATN A+YG RNTRDNF+LAA KLGLDRRD+HP Sbjct: 121 GRALLSIIEDTSGAHDTMVGGSTAATNAARYGTTGLRNTRDNFVLAAGKLGLDRRDLHPS 180 Query: 181 VSFFAPVAIDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQASVEI 240 + FFAPVA+D+ G+F W +RR + DFVDLRAE++LL+A+SNCPHPLDP+ Y VEI Sbjct: 181 IGFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDLLVAVSNCPHPLDPSPGYAPGDVEI 240 Query: 241 VRYRAAAPAADDLCRTATAEAVRAYQNNALYL 272 +RY+A PAADDLCRT + EA RA++NNA YL Sbjct: 241 IRYQAPEPAADDLCRTVSLEAKRAFENNAFYL 272 >ref|YP_534374.1| hypothetical protein RPC_4533 [Rhodopseudomonas palustris BisB18] gb|ABD90055.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 277 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/278 (67%), Positives = 230/278 (82%), Gaps = 1/278 (0%) Query: 1 MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDADAVIHRETIPSGWY 60 MIL+ EQ+AEIAA+ +RY++ KA GQ+ AP+ALP PT RD API A ++IHRET+P GWY Sbjct: 1 MILTAEQQAEIAANRQRYDQHKALGQQQAPKALPPPTPRDGAPIAASSIIHRETVPGGWY 60 Query: 61 WTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDM 120 + T+LNRG+ LRIVN+SG S VSLLAWN+ADT+ERLNHADTIKVQWAA L+KGRV+LSDM Sbjct: 61 FVTKLNRGEALRIVNSSGKSCVSLLAWNAADTSERLNHADTIKVQWAASLRKGRVILSDM 120 Query: 121 GRALLGITEDSSAAHDAVVGGSTAATNVAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPC 180 GRALL I ED+S AHD + G S AATN A+YG+G FRN+RDNF+LAA KLGL RRDVHPC Sbjct: 121 GRALLSIVEDTSGAHDTLAGCSNAATNAARYGEG-FRNSRDNFLLAAGKLGLARRDVHPC 179 Query: 181 VSFFAPVAIDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQASVEI 240 V+FFAPV++DADG+F W +RR DFVDLRAEM+LL+ALSNCPHPLDP+ AY VE+ Sbjct: 180 VAFFAPVSVDADGRFEWHGERRTAGDFVDLRAEMDLLLALSNCPHPLDPSPAYAPGDVEL 239 Query: 241 VRYRAAAPAADDLCRTATAEAVRAYQNNALYLGETLEG 278 +R +A AADDLCR+A+ EA RA++NNA +L ++ G Sbjct: 240 IRTQAPPVAADDLCRSASLEAKRAFENNATWLNSSVAG 277 >ref|NP_946757.1| hypothetical protein RPA1407 [Rhodopseudomonas palustris CGA009] emb|CAE26850.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 279 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 175/272 (64%), Positives = 222/272 (81%) Query: 1 MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDADAVIHRETIPSGWY 60 MIL+E++KAE+ A+ RRY + KA GQ+ AP+ALP PT RD API +++IHRET+P GWY Sbjct: 1 MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWY 60 Query: 61 WTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDM 120 + T+L RG+ +RI+NTSG S VS+ AWN+ D +ERLNHADTIKVQWAA L+KGRV+LSDM Sbjct: 61 YVTKLGRGEAVRIINTSGTSCVSIQAWNALDPSERLNHADTIKVQWAASLRKGRVILSDM 120 Query: 121 GRALLGITEDSSAAHDAVVGGSTAATNVAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPC 180 GRALL I ED+S AHD +VGGS AATN +YG G+FRN RDNF+LAA KLGLDRRDVHP Sbjct: 121 GRALLSIIEDTSGAHDTMVGGSNAATNAERYGVGSFRNARDNFVLAAGKLGLDRRDVHPS 180 Query: 181 VSFFAPVAIDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQASVEI 240 ++ FAPVA+D+ G+F W +RR + DFVDLRAE++LLIA+SNCPHPLDP+ +Y +E+ Sbjct: 181 IALFAPVAVDSQGRFEWHGERRHKGDFVDLRAELDLLIAVSNCPHPLDPSPSYAPGDIEL 240 Query: 241 VRYRAAAPAADDLCRTATAEAVRAYQNNALYL 272 +RY+A PA+DDLCRT + EA RA++NNA YL Sbjct: 241 IRYQAPQPASDDLCRTVSLEAKRAFENNAFYL 272 >ref|YP_001990594.1| urea carboxylase-associated protein 2 [Rhodopseudomonas palustris TIE-1] gb|ACF00119.1| urea carboxylase-associated protein 2 [Rhodopseudomonas palustris TIE-1] Length = 279 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 174/272 (63%), Positives = 224/272 (82%) Query: 1 MILSEEQKAEIAAHTRRYNELKAAGQEHAPRALPAPTARDAAPIDADAVIHRETIPSGWY 60 MIL+E++KAE+ A+ RRY + KA GQ+ AP+ALP PT RD API +++IHRET+P GWY Sbjct: 1 MILTEQEKAEVEANRRRYEQHKALGQQQAPKALPPPTPRDGAPIAPESIIHRETVPGGWY 60 Query: 61 WTTRLNRGDTLRIVNTSGASTVSLLAWNSADTTERLNHADTIKVQWAARLQKGRVLLSDM 120 + T+L RG+ +RI+NTSG S VS+ AWN+ D +ERLNHADTIKVQWAA L+KGRV+LSDM Sbjct: 61 YVTKLGRGEAVRIINTSGTSCVSIQAWNARDPSERLNHADTIKVQWAASLRKGRVILSDM 120 Query: 121 GRALLGITEDSSAAHDAVVGGSTAATNVAKYGDGNFRNTRDNFILAAAKLGLDRRDVHPC 180 GRALL I ED+S AHD +VGGS AATN A+YG G+FR+TRDNF+LAA KLGLDRRDVHP Sbjct: 121 GRALLSIIEDTSGAHDTMVGGSNAATNAARYGAGSFRSTRDNFVLAAGKLGLDRRDVHPS 180 Query: 181 VSFFAPVAIDADGKFIWSEQRRQQDDFVDLRAEMELLIALSNCPHPLDPAKAYPQASVEI 240 ++FFAPVA+D+ G+F W +RR + DFVDLRAE+++LIA+SNCPHPLDP+ +Y +++ Sbjct: 181 IAFFAPVAVDSQGRFEWHGERRNKGDFVDLRAELDVLIAVSNCPHPLDPSPSYAPGDIDL 240 Query: 241 VRYRAAAPAADDLCRTATAEAVRAYQNNALYL 272 +RY+A P +DDLCRT + EA RA++NNA YL Sbjct: 241 IRYQAPQPVSDDLCRTVSLEAKRAFENNAFYL 272