BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0016.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001637533.1| helix-turn-helix domain-containing protein [... 178 6e-43 ref|YP_002420090.1| AraC family transcriptional regulator [Methy... 177 1e-42 gb|ADP96820.1| transcriptional regulator, AraC family protein [M... 122 3e-26 ref|YP_959344.1| helix-turn-helix domain-containing protein [Mar... 118 6e-25 ref|ZP_05078247.1| transcriptional regulator, AraC family [Rhodo... 114 8e-24 >ref|YP_001637533.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gb|ABY28462.1| helix-turn-helix- domain containing protein AraC type [Methylobacterium extorquens PA1] Length = 366 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 125/205 (60%) Query: 15 YVNIDRSSDRHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEIEF 74 YV + R + RH EFW+ L+R+ + LT RL P + L H R ++ + LGC I F Sbjct: 146 YVGLARHAARHQVEFWMTGLVRVAQQLTSLRLSPIHLTLCHPRHAGAREIEAFLGCAIAF 205 Query: 75 AADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQLLP 134 A DE+ FPS G + GAD +L+ +LL Y++EAL +R S+R+RVE + LLP Sbjct: 206 DALVDEVQFPSAAGNAVLTGADPYLHDLLLGYSEEALAHRVRLAESLRTRVENAVMPLLP 265 Query: 135 HGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWL 194 HG+ +AR LG S+RTL+R L+ EG F VL+ R LA YL D L IS+IAWL Sbjct: 266 HGRPRISEIARALGTSQRTLSRRLTEEGLSFESVLEEMRRDLALRYLRDTRLSISRIAWL 325 Query: 195 LGYSEVSSFTHAFVRWTGLTPRAYR 219 LG+ E ++FTHAF RWTG +P R Sbjct: 326 LGFREATAFTHAFRRWTGRSPTEAR 350 >ref|YP_002420090.1| AraC family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK82162.1| transcriptional regulator, AraC family [Methylobacterium chloromethanicum CM4] Length = 366 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 124/205 (60%) Query: 15 YVNIDRSSDRHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEIEF 74 YV + R + RH EFW+ IR+ + LT RL P + L H R ++ + LGC I F Sbjct: 146 YVGLARHAARHQVEFWMTGFIRVAQQLTSLRLSPIHLTLCHPRHAGAREIEAFLGCAIAF 205 Query: 75 AADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQLLP 134 A DE+ FPS G + GAD +L+ +LL Y++EAL +R S+R+RVE + LLP Sbjct: 206 DALVDEVRFPSAAGNAVLTGADPYLHDLLLGYSEEALAHRVRLAESLRTRVENAVMPLLP 265 Query: 135 HGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWL 194 HG+ +AR LG S+RTL+R L+ EG F VL+ R LA YL D L IS+IAWL Sbjct: 266 HGRPRISEIARALGTSQRTLSRRLTEEGLSFESVLEEMRRDLALRYLRDTRLSISRIAWL 325 Query: 195 LGYSEVSSFTHAFVRWTGLTPRAYR 219 LG+ E ++FTHAF RWTG +P R Sbjct: 326 LGFREATAFTHAFRRWTGRSPTEAR 350 >gb|ADP96820.1| transcriptional regulator, AraC family protein [Marinobacter adhaerens HP15] Length = 389 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 11/211 (5%) Query: 18 IDRSSD-----RHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEI 72 +D +SD RH E +++ LI R++TDG P +I+ +H R E VR +LGC++ Sbjct: 172 LDAASDDVRRLRHFNECFVLGLITFFRSITDGNFYPSRIEFEHERAEGQDHVREVLGCDV 231 Query: 73 EFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASR--RSSVRSRVEGHIA 130 F A + L FP+++ + A H LL + + +R + + +VE +A Sbjct: 232 TFGAPENRLYFPAKL----LSHASPHAEPELLDLHERFASEQVARLEKKDIVGQVERIVA 287 Query: 131 QLLPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISK 190 +LL G+ +AVA RLG+ RTL L+ F+ VL FR LAR L + I + Sbjct: 288 ELLDSGEVTLDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLATTDESIDE 347 Query: 191 IAWLLGYSEVSSFTHAFVRWTGLTPRAYRSS 221 I +L G+SE S+F AF RW+G+TP YR + Sbjct: 348 IVYLTGFSEPSTFYRAFKRWSGMTPIEYRKT 378 >ref|YP_959344.1| helix-turn-helix domain-containing protein [Marinobacter aquaeolei VT8] gb|ABM19157.1| transcriptional regulator, AraC family [Marinobacter aquaeolei VT8] Length = 343 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 18 IDRSSD-----RHHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEI 72 +D +SD +H E ++ LI +++TDG P +I+ +H R VR +LGCE+ Sbjct: 126 LDTASDDVRRLKHFNECFVQGLITFFKSITDGNFYPSRIEFEHDRELGQDHVREVLGCEV 185 Query: 73 EFAADRDELLFPSRIGALPVVGADLHLNRMLLQYADEALRNRASRRSSVRSRVEGHIAQL 132 F A+ + L FP+ + + A+ L + ++A E + R ++ V +VE IA+L Sbjct: 186 VFGAEENRLYFPAELLSHASPHAEPELLALHERFASEQV-ARLEKKDIV-GQVERIIAEL 243 Query: 133 LPHGKANAEAVARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIA 192 L G+ +AVA RLG+ RTL L+ F+ VL FR LAR L + I +I Sbjct: 244 LDSGEVTLDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLATTDESIDEIV 303 Query: 193 WLLGYSEVSSFTHAFVRWTGLTPRAYRSS 221 +L G+SE S+F AF RW+G+TP YR + Sbjct: 304 YLTGFSEPSTFYRAFKRWSGMTPIEYRKT 332 >ref|ZP_05078247.1| transcriptional regulator, AraC family [Rhodobacterales bacterium Y4I] gb|EDZ46226.1| transcriptional regulator, AraC family [Rhodobacterales bacterium Y4I] Length = 338 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 104/199 (52%), Gaps = 2/199 (1%) Query: 25 HHAEFWLVTLIRICRALTDGRLVPKQIKLKHARRETPLDVRSLLGCEIEFAADRDELLFP 84 + EF R R+ P++ H RR ++ + GC + F A ++F Sbjct: 140 QYIEFLAALFFSALREAAGTRIEPQEAAFVHQRRRGAEEMSAFFGCPVRFGAPASRIVFK 199 Query: 85 SRIGALPVVGADLHLNRMLLQYADEALRNRA-SRRSS-VRSRVEGHIAQLLPHGKANAEA 142 LP+ D L R+L + D+ L R R+SS + ++VE ++ L G A+ Sbjct: 200 PEDLDLPLASGDRLLLRVLRAFGDQMLHGRGLGRKSSDLTAQVEEAVSARLSGGTASLAN 259 Query: 143 VARRLGMSRRTLARALSSEGADFSDVLKAFRIALARHYLEDEELPISKIAWLLGYSEVSS 202 VA LGMS RTL+R L+ G + VL+ R ALA YL + LP+S+IA+LLGYS ++S Sbjct: 260 VAADLGMSPRTLSRKLARAGTSYFTVLEELRKALAIRYLRETRLPLSEIAFLLGYSGLNS 319 Query: 203 FTHAFVRWTGLTPRAYRSS 221 F+ AF RWTG +P +R Sbjct: 320 FSEAFRRWTGQSPGQFRGG 338