BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0011.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_783126.1| ABC transporter periplasmic branched chain amin... 694 0.0 ref|YP_534011.1| ABC transporter periplasmic branched chain amin... 663 0.0 ref|ZP_08630811.1| branched-chain amino acid ABC transporter, am... 659 0.0 ref|YP_485195.1| ABC transporter, periplasmic branched chain ami... 650 0.0 ref|YP_568718.1| ABC transporter periplasmic branched chain amin... 637 0.0 >ref|YP_783126.1| ABC transporter periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ08146.1| ABC transporter, periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisA53] Length = 410 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/412 (78%), Positives = 365/412 (88%), Gaps = 2/412 (0%) Query: 1 MHRLIVAAAAALTVLGGAASAQESIKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 M + ++A A AL + G A AQE++KIGYIDPLSGGGASVGE GLKTFQ+LA+ELNAKGG Sbjct: 1 MLKKMIAVALALPLFGSVAIAQETVKIGYIDPLSGGGASVGEVGLKTFQFLAEELNAKGG 60 Query: 61 ILGHKVEIVPLDNKTNPQESLVQAQKAVDAGVHYITQGNGSSVGAALEDFVTKHNSRNPG 120 +LG KVEIVPLDNKTNPQESL+QAQKA+DAGV Y+TQGNGSSV AL DF+TK+N RNPG Sbjct: 61 VLGKKVEIVPLDNKTNPQESLIQAQKAIDAGVRYVTQGNGSSVAGALSDFITKYNERNPG 120 Query: 121 KEVLYFNYAAVDPAMTNEKCSYWHFRWDANSDIKMEALTNYMKGQPSIKKVYLINMDYSF 180 KEVLYFNYAAVDP +TNEKCS+WHFRWDANSDIKMEALTNYMKG P IKKVYLIN DYSF Sbjct: 121 KEVLYFNYAAVDPVLTNEKCSFWHFRWDANSDIKMEALTNYMKGVPDIKKVYLINQDYSF 180 Query: 181 GQSVRTTARKMLGEKRPDIQVVGDELHPMLKVTDFSPYIAKIKASGADTVVTGNWGQDFA 240 GQSVRT A+ MLG KRPDIQ+VGDELHP+LK++DF+PY+AKIKASGADTVVTGNWGQD A Sbjct: 181 GQSVRTQAKAMLGAKRPDIQIVGDELHPLLKISDFAPYVAKIKASGADTVVTGNWGQDIA 240 Query: 241 LLLKAAADAGLKVNWYTYYAGGAGGPTAIKQAGLEGQVFQISEGVPNSGNKAAMDFEKDF 300 LLLKA+ADAGL+VNWYTYYAGG+GGPTA+KQAGL QVFQ+SEG N +K + +FEK F Sbjct: 241 LLLKASADAGLRVNWYTYYAGGSGGPTAVKQAGLNHQVFQVSEGFANLEHKTSQEFEKVF 300 Query: 301 RAKTGISVWYPRAVNEMRMFKAAAEKANSIDPVKVAAALEGMKFEVFDGGEGFIRKDDHQ 360 RAK I VWYPRAVNEMRMF AAA++A S++PVKVA ALEGMKFEVF GGEGF+RKDDHQ Sbjct: 301 RAKYDIGVWYPRAVNEMRMFAAAADQAKSLEPVKVAQALEGMKFEVFSGGEGFLRKDDHQ 360 Query: 361 FFQPIYISSFGSLADKTKEPFDEENTGWGWRIVSKIDTAQTMLPTTCNMKRP 412 FFQPIYISS G ++ KEPFDEE TGWGWR+V+KIDTAQTMLPTTC M+RP Sbjct: 361 FFQPIYISSLGVRSE--KEPFDEEKTGWGWRLVAKIDTAQTMLPTTCKMERP 410 >ref|YP_534011.1| ABC transporter periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisB18] gb|ABD89692.1| ABC transporter, periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisB18] Length = 410 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/412 (78%), Positives = 363/412 (88%), Gaps = 2/412 (0%) Query: 1 MHRLIVAAAAALTVLGGAASAQESIKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 M RL+VAAA AL +LG AA AQE++KIGYIDPLSGGGASVGE G KTFQ++ADELNAKGG Sbjct: 1 MRRLVVAAALALPMLGQAAHAQETVKIGYIDPLSGGGASVGEVGFKTFQFMADELNAKGG 60 Query: 61 ILGHKVEIVPLDNKTNPQESLVQAQKAVDAGVHYITQGNGSSVGAALEDFVTKHNSRNPG 120 ILG KVEIVPLDNKTNPQESL+QAQKA+DAGV Y+TQGNGS+VG AL DFVTK+N RNPG Sbjct: 61 ILGKKVEIVPLDNKTNPQESLIQAQKAIDAGVRYVTQGNGSAVGGALSDFVTKYNERNPG 120 Query: 121 KEVLYFNYAAVDPAMTNEKCSYWHFRWDANSDIKMEALTNYMKGQPSIKKVYLINMDYSF 180 KEVLYFNYAAVDP +TN+KCS+WHFRWDANSDIKM ALTNY+KG P+IKKVYLIN DYSF Sbjct: 121 KEVLYFNYAAVDPVLTNDKCSFWHFRWDANSDIKMAALTNYIKGVPAIKKVYLINQDYSF 180 Query: 181 GQSVRTTARKMLGEKRPDIQVVGDELHPMLKVTDFSPYIAKIKASGADTVVTGNWGQDFA 240 GQSVRT A+ ML KRPDI +VGDELHP+LK++DF+PY+AKIKASGADTVVTGNWGQD A Sbjct: 181 GQSVRTQAKAMLAAKRPDIAIVGDELHPLLKISDFAPYVAKIKASGADTVVTGNWGQDIA 240 Query: 241 LLLKAAADAGLKVNWYTYYAGGAGGPTAIKQAGLEGQVFQISEGVPNSGNKAAMDFEKDF 300 LLLKAAADAGLKVNWYTYYAGG GGPTAIKQAGL QVFQI+EG+ N G+K + D EK Sbjct: 241 LLLKAAADAGLKVNWYTYYAGGTGGPTAIKQAGLNHQVFQITEGIANLGHKPSEDLEKAI 300 Query: 301 RAKTGISVWYPRAVNEMRMFKAAAEKANSIDPVKVAAALEGMKFEVFDGGEGFIRKDDHQ 360 RAK S++YPR VNEMRMF AAAEKA S++PVKVA ALE MKFEV DGGEG +RKDDHQ Sbjct: 301 RAKYDFSLFYPRVVNEMRMFAAAAEKAKSLEPVKVAQALEDMKFEVLDGGEGIMRKDDHQ 360 Query: 361 FFQPIYISSFGSLADKTKEPFDEENTGWGWRIVSKIDTAQTMLPTTCNMKRP 412 FFQPIYISS G ++ KEPFDEE TGWGW++V+KIDTAQTMLPTTC M+RP Sbjct: 361 FFQPIYISSLGERSE--KEPFDEEKTGWGWKLVAKIDTAQTMLPTTCKMERP 410 >ref|ZP_08630811.1| branched-chain amino acid ABC transporter, amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06343.1| branched-chain amino acid ABC transporter, amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 410 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/412 (75%), Positives = 359/412 (87%), Gaps = 2/412 (0%) Query: 1 MHRLIVAAAAALTVLGGAASAQESIKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 M +L++AAA AL +LGGAA AQ+++KIGYIDPLSGGGAS+GE G KT+Q+LADELNAKGG Sbjct: 1 MRKLMMAAAFALPMLGGAAMAQDTVKIGYIDPLSGGGASIGEVGFKTYQFLADELNAKGG 60 Query: 61 ILGHKVEIVPLDNKTNPQESLVQAQKAVDAGVHYITQGNGSSVGAALEDFVTKHNSRNPG 120 ILG KVEIVP DNKTNPQESL+QAQKA+D+GV Y+TQGNGSSV AL +FV K+N RNPG Sbjct: 61 ILGKKVEIVPYDNKTNPQESLIQAQKAIDSGVRYLTQGNGSSVAIALAEFVNKYNERNPG 120 Query: 121 KEVLYFNYAAVDPAMTNEKCSYWHFRWDANSDIKMEALTNYMKGQPSIKKVYLINMDYSF 180 KEVL+FNYAAVDP +TN+KC++ HFRWDANSDIKM ALTNYMK P+IKKVYLIN DYSF Sbjct: 121 KEVLFFNYAAVDPVLTNDKCTFSHFRWDANSDIKMAALTNYMKTTPTIKKVYLINQDYSF 180 Query: 181 GQSVRTTARKMLGEKRPDIQVVGDELHPMLKVTDFSPYIAKIKASGADTVVTGNWGQDFA 240 G+SVRT AR ML EKRPDI++VGDE HP+LK+TDF+PYIAKIKASGAD+V+TGNWGQD A Sbjct: 181 GESVRTAARAMLKEKRPDIEIVGDEKHPLLKITDFAPYIAKIKASGADSVITGNWGQDIA 240 Query: 241 LLLKAAADAGLKVNWYTYYAGGAGGPTAIKQAGLEGQVFQISEGVPNSGNKAAMDFEKDF 300 LLLKA+ADAGLKVNWYTYYAGG GGPTAIKQAGL QVFQI+EGV N ++++ FEK Sbjct: 241 LLLKASADAGLKVNWYTYYAGGTGGPTAIKQAGLNHQVFQIAEGVANIKHESSEKFEKAL 300 Query: 301 RAKTGISVWYPRAVNEMRMFKAAAEKANSIDPVKVAAALEGMKFEVFDGGEGFIRKDDHQ 360 RAK S++YPRAVNEMRMF AAAEKA S+DP+KVAAALEGM+FEVF+GG+GF+RKDDHQ Sbjct: 301 RAKYDFSLFYPRAVNEMRMFAAAAEKAKSLDPIKVAAALEGMEFEVFNGGKGFMRKDDHQ 360 Query: 361 FFQPIYISSFGSLADKTKEPFDEENTGWGWRIVSKIDTAQTMLPTTCNMKRP 412 FFQP+YI+S G K E FDEE TGWGW +V+KIDT QT+LPTTC M RP Sbjct: 361 FFQPMYIASLGE--RKPDEQFDEEKTGWGWHVVAKIDTDQTVLPTTCKMTRP 410 >ref|YP_485195.1| ABC transporter, periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris HaA2] gb|ABD06284.1| ABC transporter, periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris HaA2] Length = 409 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/412 (81%), Positives = 362/412 (87%), Gaps = 3/412 (0%) Query: 1 MHRLIVAAAAALTVLGGAASAQESIKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 M RLI A AL + G AA AQE++KIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG Sbjct: 1 MKRLIAAMVIALPMFGSAALAQETVKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 Query: 61 ILGHKVEIVPLDNKTNPQESLVQAQKAVDAGVHYITQGNGSSVGAALEDFVTKHNSRNPG 120 ILG KVEIVPLDNKTNPQESL+QAQKA+D+GV YITQGNGSSV AL DFVTK+N RNPG Sbjct: 61 ILGKKVEIVPLDNKTNPQESLIQAQKAIDSGVRYITQGNGSSVAGALADFVTKYNERNPG 120 Query: 121 KEVLYFNYAAVDPAMTNEKCSYWHFRWDANSDIKMEALTNYMKGQPSIKKVYLINMDYSF 180 KEVLYFNYAAVDP +TNEKCS+WHFRWDANSDIKMEALTNYMK QPSIKKVYLIN DYSF Sbjct: 121 KEVLYFNYAAVDPVLTNEKCSFWHFRWDANSDIKMEALTNYMKDQPSIKKVYLINQDYSF 180 Query: 181 GQSVRTTARKMLGEKRPDIQVVGDELHPMLKVTDFSPYIAKIKASGADTVVTGNWGQDFA 240 GQSVRTTAR ML +KR DIQ+VGDELHP+LK+TDF+PYIAKIKASGADTVVTGNWGQD A Sbjct: 181 GQSVRTTARAMLSKKRSDIQIVGDELHPLLKITDFAPYIAKIKASGADTVVTGNWGQDIA 240 Query: 241 LLLKAAADAGLKVNWYTYYAGGAGGPTAIKQAGLEGQVFQISEGVPNSGNKAAMDFEKDF 300 LLLKAAADAGLKV+WYTYYAGGAGGPTAIKQ GL QVFQI+EG N +K + DFEK F Sbjct: 241 LLLKAAADAGLKVSWYTYYAGGAGGPTAIKQTGLNHQVFQITEGFANVAHKESQDFEKAF 300 Query: 301 RAKTGISVWYPRAVNEMRMFKAAAEKANSIDPVKVAAALEGMKFEVFDGGEGFIRKDDHQ 360 RAK +S+WYPRAVNEMRMF AAA+KA S+DPVKVA ALEGMKFEVF+GG+G +RKDDHQ Sbjct: 301 RAKVDLSLWYPRAVNEMRMFAAAADKAKSVDPVKVAQALEGMKFEVFNGGQGEMRKDDHQ 360 Query: 361 FFQPIYISSFGSLADKTKEPFDEENTGWGWRIVSKIDTAQTMLPTTCNMKRP 412 FFQPIY+SSFG D FDEE TGWGW+ V+KIDTAQTMLPTTC M RP Sbjct: 361 FFQPIYVSSFG---DIPAGQFDEEKTGWGWKQVAKIDTAQTMLPTTCKMDRP 409 >ref|YP_568718.1| ABC transporter periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisB5] gb|ABE38817.1| ABC transporter, periplasmic branched chain amino acid binding protein [Rhodopseudomonas palustris BisB5] Length = 409 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/412 (78%), Positives = 359/412 (87%), Gaps = 3/412 (0%) Query: 1 MHRLIVAAAAALTVLGGAASAQESIKIGYIDPLSGGGASVGEGGLKTFQYLADELNAKGG 60 M RL+ A A AL +LG AA QE++KIGYIDPLSGGGASVGEGGLKTFQ+LA+ELNAKGG Sbjct: 1 MKRLLAAVAIALPMLGSAAMGQETVKIGYIDPLSGGGASVGEGGLKTFQFLAEELNAKGG 60 Query: 61 ILGHKVEIVPLDNKTNPQESLVQAQKAVDAGVHYITQGNGSSVGAALEDFVTKHNSRNPG 120 ILG KVEIVPLDNKTNPQESL+QAQKA+D+GV YITQGNGSSV AL DF+TK+N RNPG Sbjct: 61 ILGKKVEIVPLDNKTNPQESLIQAQKAIDSGVRYITQGNGSSVAGALSDFITKYNERNPG 120 Query: 121 KEVLYFNYAAVDPAMTNEKCSYWHFRWDANSDIKMEALTNYMKGQPSIKKVYLINMDYSF 180 KEVLYFNYAAVDP +TN+KCS+WHFRWDANSDIKMEALTNYMK PSIKKVYLIN DYSF Sbjct: 121 KEVLYFNYAAVDPVLTNDKCSFWHFRWDANSDIKMEALTNYMKDAPSIKKVYLINQDYSF 180 Query: 181 GQSVRTTARKMLGEKRPDIQVVGDELHPMLKVTDFSPYIAKIKASGADTVVTGNWGQDFA 240 GQSVRT AR ML KR DIQ+VGDELHP+LK+TDF+PY+AKIKASGADTVVTGNWGQD A Sbjct: 181 GQSVRTQARAMLAAKRSDIQIVGDELHPLLKITDFAPYVAKIKASGADTVVTGNWGQDIA 240 Query: 241 LLLKAAADAGLKVNWYTYYAGGAGGPTAIKQAGLEGQVFQISEGVPNSGNKAAMDFEKDF 300 LLLKAAADAGLKV+WYTYYAGGAGGPTAIKQ GL QVFQI+EG N +K + DFEK F Sbjct: 241 LLLKAAADAGLKVSWYTYYAGGAGGPTAIKQTGLNHQVFQITEGFANVDHKTSQDFEKAF 300 Query: 301 RAKTGISVWYPRAVNEMRMFKAAAEKANSIDPVKVAAALEGMKFEVFDGGEGFIRKDDHQ 360 RAK +S+WYPRAVNEMRMF AAAEKA S+DPVKVA +LE MKFEVF GGEG +RKDDHQ Sbjct: 301 RAKVDLSLWYPRAVNEMRMFAAAAEKAKSLDPVKVAQSLEDMKFEVFSGGEGMMRKDDHQ 360 Query: 361 FFQPIYISSFGSLADKTKEPFDEENTGWGWRIVSKIDTAQTMLPTTCNMKRP 412 FFQPIYISSFG + FDEE TGWGW+ V+KIDTA+T+LPTTC M+RP Sbjct: 361 FFQPIYISSFGEIKPGQ---FDEEKTGWGWKEVAKIDTAKTVLPTTCKMERP 409