BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0007.p (139 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002424141.1| GreA/GreB family elongation factor [Methylob... 123 7e-27 ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopse... 123 7e-27 ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotro... 123 7e-27 ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter... 123 9e-27 ref|NP_946219.1| putative nucleoside diphosphate kinase regulato... 122 2e-26 >ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium chloromethanicum CM4] Length = 137 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 66/125 (52%), Positives = 85/125 (68%) Query: 11 APALPPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSL 70 A A PPI +TA + RLS LA S+M P V FL+ E DR Q+V A D RMGS Sbjct: 7 AAAKPPIKMTADDHERLSRLAASTMDRAPEVVSFLSDELDRVQIVRGGAAQGDFARMGSR 66 Query: 71 VRYRDDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSV 130 V +RD+ TG ++ V LVYP EADI ++S+LTP+GAALIGLS GQ+ID+ T + +TR + Sbjct: 67 VDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGETRRL 126 Query: 131 TILAV 135 T+LAV Sbjct: 127 TVLAV 131 >ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 134 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 62/123 (50%), Positives = 84/123 (68%) Query: 15 PPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYR 74 PPI + + +A RL LA+ + +P A+FLA E RA + D A L +V M S + +R Sbjct: 10 PPITLRSRDAERLGQLAEVAAQRYPATAEFLAGEVARASVAPDSAPLPGIVCMESALTFR 69 Query: 75 DDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTILA 134 DD TG + V LVYP EAD+ RIS+LTP+GAALIGLSVGQ+I F+TPS + RS+T+L+ Sbjct: 70 DDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISFETPSGERRSLTVLS 129 Query: 135 VTH 137 V+ Sbjct: 130 VSE 132 >ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] ref|YP_004633965.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans OM5] gb|AEI04094.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM4] gb|AEI07724.1| transcription elongation factor GreA [Oligotropha carboxidovorans OM5] Length = 134 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 61/124 (49%), Positives = 86/124 (69%) Query: 14 LPPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRY 73 LP I I+A +A RL LA+ + +P ++FLARE +RA++ A D + D+V M S V + Sbjct: 9 LPAIAISARDAGRLRHLAEVAAGQYPETSEFLAREIERAEIRAADQSMRDIVAMQSEVTF 68 Query: 74 RDDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTIL 133 RDD G R V LVYP +AD+A +ISVLTP+GAALIG+ VG++I+FQTP+ RS+T++ Sbjct: 69 RDDIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAGGWRSLTVI 128 Query: 134 AVTH 137 V Sbjct: 129 KVVQ 132 >ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 141 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 87/122 (71%) Query: 14 LPPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRY 73 LP I I++ + RL LA+++M +P A+FLARE DRA+++ D ++V M S V + Sbjct: 9 LPAIAISSRDIDRLRHLAEAAMEKYPATAEFLAREIDRAEIIPADRSARNIVTMQSEVTF 68 Query: 74 RDDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTIL 133 DD +G R V+LVYP +AD+ +IS+LTP+GAALIGLS GQ+I+FQTPS RS+T++ Sbjct: 69 IDDISGQKRTVILVYPEDADVDAGKISILTPIGAALIGLSAGQSIEFQTPSGGWRSLTVI 128 Query: 134 AV 135 AV Sbjct: 129 AV 130 >ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas palustris CGA009] gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris TIE-1] Length = 134 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/123 (51%), Positives = 83/123 (67%) Query: 15 PPIVITASEAHRLSALADSSMAVFPRVAQFLARETDRAQLVADDADLHDVVRMGSLVRYR 74 PPI I + +A RL LA+++ +P A FLA E RA + D L +V M S + +R Sbjct: 10 PPITIRSRDAERLGQLAEAAAQRYPATADFLAGEVARANVAPDHDPLPGIVCMESALTFR 69 Query: 75 DDETGDVREVVLVYPHEADIALRRISVLTPVGAALIGLSVGQTIDFQTPSQQTRSVTILA 134 DD TG + V LVYP EAD+ RISVLTP+GAALIGLSVGQ+I F+TPS + RS+T+L+ Sbjct: 70 DDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSISFETPSGERRSLTVLS 129 Query: 135 VTH 137 V+ Sbjct: 130 VSE 132