BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0003.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002542058.1| transcriptional regulator protein [Agrobacte... 305 6e-81 ref|YP_001525947.1| transcriptional regulator [Azorhizobium caul... 303 3e-80 ref|YP_002548262.1| transcriptional regulator LysR family [Agrob... 270 3e-70 gb|EFV85048.1| LysR family Transcriptional regulator [Achromobac... 255 8e-66 gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achrom... 252 7e-65 >ref|YP_002542058.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gb|ACM30461.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 317 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 190/245 (77%), Gaps = 8/245 (3%) Query: 2 HMDCLPMIELRHLRYAVAVAEEGHITRAAARLGIQQPPLSQQIRALETAIGAPLFRRQPR 61 ++ C+ MIELRHLRYAVAVA+ GHITRAA +LGIQQPPLSQQIRALET IG PLF R PR Sbjct: 5 YVICMYMIELRHLRYAVAVADAGHITRAAEQLGIQQPPLSQQIRALETMIGTPLFHRLPR 64 Query: 62 GVELTAAGRAFVGKARAILRDAELAVEAARRASRGQEGQLAIGFTSSAAFHPFVTGVMRE 121 G+ LTAAG+ V +AR IL + +LAVEA +R++RG++G LAIGFTSSAAFHP V+ ++R Sbjct: 65 GMALTAAGQTLVERARIILANVDLAVEATQRSARGEQGNLAIGFTSSAAFHPLVSSMVRS 124 Query: 122 MRERAPAITLSLEEASTGELIAAVEADRLDAAFVRAPSERLENLTITHLLDEEMVVALPD 181 +++ AP + L+LEEASTG+LI A+ A+RLD AFVR+P + L I +LDEEM+VALPD Sbjct: 125 LKQSAPDVALALEEASTGDLIEALRAERLDVAFVRSPVDASAGLVIEPILDEEMLVALPD 184 Query: 182 HHP--------RARKDTRRRISLASLADEPLILYRRPTGPGLYDSIIAACRAAGFSPKVA 233 HP R + RRI L LA+E ILYRRP+GPGLYDSIIAACRAAGFSP++ Sbjct: 185 QHPLVTGAVSRRRHGISSRRIPLLDLANETFILYRRPSGPGLYDSIIAACRAAGFSPRIG 244 Query: 234 QEATR 238 QEA R Sbjct: 245 QEAPR 249 >ref|YP_001525947.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] dbj|BAF89029.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 186/232 (80%), Gaps = 1/232 (0%) Query: 8 MIELRHLRYAVAVAEEGHITRAAARLGIQQPPLSQQIRALETAIGAPLFRRQPRGVELTA 67 MIELRHLRY +AVAEEGH+TRAAARLGIQQPPLSQQI+ALE +G PLFRR PRGVE TA Sbjct: 1 MIELRHLRYLLAVAEEGHMTRAAARLGIQQPPLSQQIKALEGMVGTPLFRRLPRGVEPTA 60 Query: 68 AGRAFVGKARAILRDAELAVEAARRASRGQEGQLAIGFTSSAAFHPFVTGVMREMRERAP 127 AG V KAR IL D + A++AARR +RG+EG+LA+GFTSSAAFH V ++R MRE AP Sbjct: 61 AGLVLVEKARLILADVDRALDAARRTARGEEGRLALGFTSSAAFHALVAALVRSMREAAP 120 Query: 128 AITLSLEEASTGELIAAVEADRLDAAFVRAPSERLENLTITHLLDEEMVVALPDHHPRAR 187 ++LSLEEAST ELIAA+ RLDAAFVRAP R + L I H+LDEEM+VALPDHH A Sbjct: 121 TLSLSLEEASTLELIAALRDGRLDAAFVRAPVARPDGLVIAHVLDEEMLVALPDHHRLAA 180 Query: 188 KDTRRR-ISLASLADEPLILYRRPTGPGLYDSIIAACRAAGFSPKVAQEATR 238 RRR + LA+L ++ ILYRRP+GPGLYDSIIAAC+ AGFSP+V QEA R Sbjct: 181 PALRRRALELAALEEDTFILYRRPSGPGLYDSIIAACQQAGFSPRVGQEAPR 232 >ref|YP_002548262.1| transcriptional regulator LysR family [Agrobacterium vitis S4] gb|ACM35258.1| transcriptional regulator LysR family [Agrobacterium vitis S4] Length = 309 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 142/238 (59%), Positives = 177/238 (74%), Gaps = 7/238 (2%) Query: 8 MIELRHLRYAVAVAEEGHITRAAARLGIQQPPLSQQIRALETAIGAPLFRRQPRGVELTA 67 MIELRHLRYAV VAEEGH+TRAA RLG+QQPPLSQQI+ALET +G LF RQPRG+ LT Sbjct: 1 MIELRHLRYAVTVAEEGHLTRAAERLGLQQPPLSQQIKALETEVGVTLFIRQPRGMALTE 60 Query: 68 AGRAFVGKARAILRDAELAVEAARRASRGQEGQLAIGFTSSAAFHPFVTGVMREMRERAP 127 AG AF+ +AR IL D ++AVEAA+RA+RG+ G+LAIGFT+SA FHP V ++R MR +P Sbjct: 61 AGVAFIARARQILADVDMAVEAAQRAARGEIGELAIGFTTSAVFHPLVPSIVRAMRLSSP 120 Query: 128 AITLSLEEASTGELIAAVEADRLDAAFVRAPSERL----ENLTITHLLDEEMVVALPDHH 183 ++ L L+E ST EL+ + A RLDAAF+RA + L L+I + E+MV+ALPD H Sbjct: 121 SLKLRLDEGSTTELLCELSAGRLDAAFIRATAGALPGSGPTLSIETVDIEDMVLALPDTH 180 Query: 184 PRA---RKDTRRRISLASLADEPLILYRRPTGPGLYDSIIAACRAAGFSPKVAQEATR 238 P A + R ++LA+LA E +LYRRP GLYD IIAAC+AAGFSP VAQEA + Sbjct: 181 PLALHSQNGDRDTVALAALAGETFVLYRRPLAQGLYDRIIAACQAAGFSPNVAQEAPK 238 >gb|EFV85048.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 308 Score = 255 bits (651), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 130/230 (56%), Positives = 165/230 (71%) Query: 9 IELRHLRYAVAVAEEGHITRAAARLGIQQPPLSQQIRALETAIGAPLFRRQPRGVELTAA 68 ++LR LRY +AVAEE H+T+AAARLGI+QPPLSQQIR LE +G LF R PRG+ELT + Sbjct: 4 VDLRLLRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTES 63 Query: 69 GRAFVGKARAILRDAELAVEAARRASRGQEGQLAIGFTSSAAFHPFVTGVMREMRERAPA 128 GRA + AR+IL + AV+ RR S G+ G+L +GFT SAAFHPFV ++R RE AP Sbjct: 64 GRALLADARSILALVDQAVDGVRRVSLGESGRLTVGFTGSAAFHPFVPSLIRRFRENAPQ 123 Query: 129 ITLSLEEASTGELIAAVEADRLDAAFVRAPSERLENLTITHLLDEEMVVALPDHHPRARK 188 + L LEE+STGEL+ V R+D AF+R + + +L+E M+ A P HP + Sbjct: 124 VRLVLEESSTGELMEDVRDGRVDVAFIRGAHGVDRGVAVETVLEESMLAAFPADHPMVKG 183 Query: 189 DTRRRISLASLADEPLILYRRPTGPGLYDSIIAACRAAGFSPKVAQEATR 238 R+RI+L+ LADE LILYRR GPGLYD+II+ACRAAGFSP+VAQEA R Sbjct: 184 RARKRIALSELADESLILYRRHNGPGLYDAIISACRAAGFSPRVAQEAPR 233 >gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achromobacter xylosoxidans AXX-A] Length = 299 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 129/225 (57%), Positives = 163/225 (72%) Query: 14 LRYAVAVAEEGHITRAAARLGIQQPPLSQQIRALETAIGAPLFRRQPRGVELTAAGRAFV 73 LRY +AVAEE H+T+AAARLGI+QPPLSQQIR LE +G LF R PRG+ELT +GRA + Sbjct: 2 LRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTESGRALL 61 Query: 74 GKARAILRDAELAVEAARRASRGQEGQLAIGFTSSAAFHPFVTGVMREMRERAPAITLSL 133 AR+IL + AV+ RR S G+ G+L +GFT SAAFHPFV V+R RE AP + L L Sbjct: 62 ADARSILALVDQAVDGVRRVSLGEAGRLTVGFTGSAAFHPFVPSVIRRFRESAPQVRLVL 121 Query: 134 EEASTGELIAAVEADRLDAAFVRAPSERLENLTITHLLDEEMVVALPDHHPRARKDTRRR 193 EE+STGEL+ V A R+D AF+R + + +L+E M+ A P HP + TR+R Sbjct: 122 EESSTGELMEDVRAGRVDVAFIRGAHGADRGVAVESVLEETMLAAFPADHPMVKGRTRKR 181 Query: 194 ISLASLADEPLILYRRPTGPGLYDSIIAACRAAGFSPKVAQEATR 238 I+L+ LA+E LILYRR +GPGLYD+II+ CRAAGFSP+VAQEA R Sbjct: 182 IALSELAEESLILYRRHSGPGLYDAIISGCRAAGFSPRVAQEAPR 226