BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0001.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07026860.1| transcriptional regulator, AraC family [Afipi... 462 e-128 ref|YP_001638626.1| ThiJ/PfpI domain-containing protein [Methylo... 454 e-125 ref|YP_002420124.1| AraC family transcriptional regulator [Methy... 436 e-120 ref|YP_002962103.1| bifunctional protein; N-terminal amidase, C-... 435 e-120 ref|YP_003067299.1| bifunctional amidase/AraC family transcripti... 435 e-120 >ref|ZP_07026860.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] gb|EFI51703.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] Length = 329 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/328 (68%), Positives = 266/328 (81%), Gaps = 1/328 (0%) Query: 15 PTSPRFSPNRRRSIEVLAYPAVQLLDVTGPLQVFASANALATKAGNAEPYDVRVVAKDGP 74 P +PRF P RR IE+LA+P VQLLDV GPLQVFA+AN +ATK+G A PYD++VVA G Sbjct: 2 PKNPRFPPKPRR-IEILAFPGVQLLDVAGPLQVFATANVIATKSGGAAPYDLQVVAPKGA 60 Query: 75 NVESSAGVGLAVHPLPAIDTAVDTLVIPGGDGVNPSAGLALLVDWVRERAGQARRTASVC 134 V +SAG+GL PLP + +DTL++ GG GV ++ LV WV+ RA QARR ASVC Sbjct: 61 TVTTSAGLGLVTAPLPRARSTLDTLLVAGGAGVRKASTDKALVKWVQGRAAQARRVASVC 120 Query: 135 TGAFLLAASGALDGRRAVTHWQFCAELAERFPDVHVEPDPIFVRDGSFWTSAGVTSGIDL 194 TGAFLL A+G LDG+RAVTHW C ELA RFP +HVEPDPIFV+DG+ W+SAG+T+GIDL Sbjct: 121 TGAFLLGAAGLLDGKRAVTHWTECKELARRFPAIHVEPDPIFVQDGAVWSSAGITAGIDL 180 Query: 195 ALALVEEDLGRTAALAVARYLVVFFKRPGGQAQFSEILSLQATDDRFSVLHDWISNHLAG 254 ALALVE+D+GR ALAVAR+LV+F KRPGGQAQFS LSLQ+ +DRF LH W+S+H+ G Sbjct: 181 ALALVEQDIGREMALAVARHLVMFLKRPGGQAQFSVALSLQSAEDRFGTLHHWMSHHVGG 240 Query: 255 DLSLSTLAKQAGMSERSFSRHYAEATGLTPARAIERLRVEGARHLLSETRLPIKRISQRC 314 DLSL LA+QAGMSERSFSR Y EATG TPARA+ERLRVE AR LLS+TRLP+KRI+ RC Sbjct: 241 DLSLPVLAQQAGMSERSFSRRYVEATGQTPARAVERLRVEAARRLLSDTRLPVKRIAARC 300 Query: 315 GFGSEETMRRSFLRLLSTTPQDYRARFA 342 GFGSEETMRRSF+R L+ TPQDYRARF+ Sbjct: 301 GFGSEETMRRSFVRTLAATPQDYRARFS 328 >ref|YP_001638626.1| ThiJ/PfpI domain-containing protein [Methylobacterium extorquens PA1] gb|ABY29555.1| ThiJ/PfpI domain protein [Methylobacterium extorquens PA1] Length = 338 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/327 (69%), Positives = 257/327 (78%) Query: 15 PTSPRFSPNRRRSIEVLAYPAVQLLDVTGPLQVFASANALATKAGNAEPYDVRVVAKDGP 74 P +PRF P RS+EVLA+P VQ+LDVTGPLQVFASAN ++G+ PY +RVVAK G Sbjct: 2 PKNPRFPPKPVRSVEVLAFPGVQVLDVTGPLQVFASANEHVARSGDGPPYRLRVVAKSGG 61 Query: 75 NVESSAGVGLAVHPLPAIDTAVDTLVIPGGDGVNPSAGLALLVDWVRERAGQARRTASVC 134 V SSAG+ LAV PL + AVDTL++ GG GV+ +AG L++W+R R QARR ASVC Sbjct: 62 AVASSAGLALAVEPLTPMPEAVDTLIVAGGPGVDAAAGDPELLEWLRRRTAQARRVASVC 121 Query: 135 TGAFLLAASGALDGRRAVTHWQFCAELAERFPDVHVEPDPIFVRDGSFWTSAGVTSGIDL 194 TGAF+LAASG LDGRRAVTHW +C A RFP V VE DPIFVRDG WTSAGVT+GIDL Sbjct: 122 TGAFILAASGILDGRRAVTHWSYCDAFARRFPAVRVEADPIFVRDGPVWTSAGVTAGIDL 181 Query: 195 ALALVEEDLGRTAALAVARYLVVFFKRPGGQAQFSEILSLQATDDRFSVLHDWISNHLAG 254 ALALVE DLGR ALAVARYLVVF KRPGGQAQFS LSLQ DRF LH W+ +L Sbjct: 182 ALALVEADLGRETALAVARYLVVFLKRPGGQAQFSAALSLQTEGDRFDALHRWMRVNLGA 241 Query: 255 DLSLSTLAKQAGMSERSFSRHYAEATGLTPARAIERLRVEGARHLLSETRLPIKRISQRC 314 DLSLS LA +AGMSERSFSRHY + TGLTPARA+ERLRVE AR +L+ET PIKRI+Q C Sbjct: 242 DLSLSALAAEAGMSERSFSRHYLKETGLTPARAVERLRVEAARQMLAETHRPIKRIAQHC 301 Query: 315 GFGSEETMRRSFLRLLSTTPQDYRARF 341 GF SEETMRRSFLRLL++TPQDYR+RF Sbjct: 302 GFASEETMRRSFLRLLASTPQDYRSRF 328 >ref|YP_002420124.1| AraC family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK82196.1| transcriptional regulator, AraC family [Methylobacterium chloromethanicum CM4] Length = 338 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/327 (68%), Positives = 254/327 (77%) Query: 15 PTSPRFSPNRRRSIEVLAYPAVQLLDVTGPLQVFASANALATKAGNAEPYDVRVVAKDGP 74 P +PRF P RS+EVLA+P VQ+LDVTGPLQVFASAN ++G+ PY +RVVAK G Sbjct: 2 PKNPRFPPKSVRSVEVLAFPGVQVLDVTGPLQVFASANEHVARSGDGPPYRLRVVAKSGG 61 Query: 75 NVESSAGVGLAVHPLPAIDTAVDTLVIPGGDGVNPSAGLALLVDWVRERAGQARRTASVC 134 V SSAG+ LA PL + AVDTL++ GG GV+ +A L++W+ R QARR ASVC Sbjct: 62 AVASSAGLALAAEPLTPMPEAVDTLIVAGGPGVDAAADDPELIEWLCRRTAQARRVASVC 121 Query: 135 TGAFLLAASGALDGRRAVTHWQFCAELAERFPDVHVEPDPIFVRDGSFWTSAGVTSGIDL 194 TGAF+LAASG LDGRRAVTHW +C A RFP VHVE DPIFVRDG WTSAGVT+GIDL Sbjct: 122 TGAFILAASGILDGRRAVTHWSYCDAFARRFPAVHVEADPIFVRDGPVWTSAGVTAGIDL 181 Query: 195 ALALVEEDLGRTAALAVARYLVVFFKRPGGQAQFSEILSLQATDDRFSVLHDWISNHLAG 254 ALALVE DLGR ALAVARYLVVF KRPGGQAQFS LSLQ DRF LH W+ +L Sbjct: 182 ALALVEADLGRETALAVARYLVVFLKRPGGQAQFSAALSLQTEGDRFDALHRWVRANLGA 241 Query: 255 DLSLSTLAKQAGMSERSFSRHYAEATGLTPARAIERLRVEGARHLLSETRLPIKRISQRC 314 DLSLS LA +AGMSERSFSRHY + TGLTPARA+ERLRVE AR +L+ET PIKRI+ C Sbjct: 242 DLSLSALAAEAGMSERSFSRHYLKETGLTPARAVERLRVEAARQMLAETHRPIKRIAYHC 301 Query: 315 GFGSEETMRRSFLRLLSTTPQDYRARF 341 GF SEETMRRSFLRLL++TPQDYR+RF Sbjct: 302 GFASEETMRRSFLRLLASTPQDYRSRF 328 >ref|YP_002962103.1| bifunctional protein; N-terminal amidase, C-terminal transcriptional regulator, AraC family [methylobacterium extorquens AM1] gb|ACS38826.1| putative bifunctional protein; N-terminal amidase, C-terminal transcriptional regulator, AraC family [Methylobacterium extorquens AM1] Length = 324 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/314 (69%), Positives = 246/314 (78%) Query: 28 IEVLAYPAVQLLDVTGPLQVFASANALATKAGNAEPYDVRVVAKDGPNVESSAGVGLAVH 87 +EVLA+P VQ+LDVTGPLQVFASAN + G+ PY +RVVAK G V SSAG+ LA Sbjct: 1 MEVLAFPGVQVLDVTGPLQVFASANEHVARDGDGPPYRLRVVAKSGDAVASSAGLTLAAE 60 Query: 88 PLPAIDTAVDTLVIPGGDGVNPSAGLALLVDWVRERAGQARRTASVCTGAFLLAASGALD 147 PL + AVDTL++ GG GV+ +AG L++W+R R QARR ASVCTGAF+LAASG LD Sbjct: 61 PLTPMPEAVDTLIVAGGPGVDAAAGDPELIEWLRRRTAQARRVASVCTGAFILAASGILD 120 Query: 148 GRRAVTHWQFCAELAERFPDVHVEPDPIFVRDGSFWTSAGVTSGIDLALALVEEDLGRTA 207 GRRAVTHW +C A RFP V VE DPIFVRDG WTSAGVT+GIDLALALVE DLGR Sbjct: 121 GRRAVTHWSYCDAFARRFPAVRVEADPIFVRDGPVWTSAGVTAGIDLALALVEADLGRET 180 Query: 208 ALAVARYLVVFFKRPGGQAQFSEILSLQATDDRFSVLHDWISNHLAGDLSLSTLAKQAGM 267 ALAVARYLVVF KRPGGQAQFS LSLQ DRF LH W+ +L DLSLS LA +AGM Sbjct: 181 ALAVARYLVVFLKRPGGQAQFSAALSLQTEGDRFDALHRWMRVNLGADLSLSALAAEAGM 240 Query: 268 SERSFSRHYAEATGLTPARAIERLRVEGARHLLSETRLPIKRISQRCGFGSEETMRRSFL 327 SERSFSRHY + TGLTPARA+ERLRVE AR +L+ET PIKRI+ CGF SEETMRRSFL Sbjct: 241 SERSFSRHYLKETGLTPARAVERLRVEAARQMLAETHRPIKRIAHHCGFASEETMRRSFL 300 Query: 328 RLLSTTPQDYRARF 341 RLL++TPQDYR+RF Sbjct: 301 RLLASTPQDYRSRF 314 >ref|YP_003067299.1| bifunctional amidase/AraC family transcriptional regulator [Methylobacterium extorquens DM4] emb|CAX23323.1| putative bifunctional protein; N-terminal amidase, C-terminal transcriptional regulator, AraC family [Methylobacterium extorquens DM4] Length = 324 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/314 (69%), Positives = 247/314 (78%) Query: 28 IEVLAYPAVQLLDVTGPLQVFASANALATKAGNAEPYDVRVVAKDGPNVESSAGVGLAVH 87 +EVLA+P VQ+LDVTGPLQVFASAN + G+ PY +RVVAK G V SSAG+ LAV Sbjct: 1 MEVLAFPGVQVLDVTGPLQVFASANEHVARDGDGPPYRLRVVAKSGGAVASSAGLTLAVE 60 Query: 88 PLPAIDTAVDTLVIPGGDGVNPSAGLALLVDWVRERAGQARRTASVCTGAFLLAASGALD 147 PL + AVDTL++ GG GV+ +AG L++W+R R QARR ASVCTGAF+LAASG LD Sbjct: 61 PLTPMPEAVDTLIVAGGPGVDAAAGDPELLEWLRRRTAQARRVASVCTGAFILAASGILD 120 Query: 148 GRRAVTHWQFCAELAERFPDVHVEPDPIFVRDGSFWTSAGVTSGIDLALALVEEDLGRTA 207 GRRAVTHW +C A RFP V VE DPIFVRDG WTSAGVT+GIDLALALVE DLGR Sbjct: 121 GRRAVTHWSYCDAFARRFPAVRVEADPIFVRDGPVWTSAGVTAGIDLALALVEADLGRET 180 Query: 208 ALAVARYLVVFFKRPGGQAQFSEILSLQATDDRFSVLHDWISNHLAGDLSLSTLAKQAGM 267 ALAVARYLVVF KRPGGQAQFS LSLQ DRF LH W+ +L DLSLS L+ +AGM Sbjct: 181 ALAVARYLVVFLKRPGGQAQFSAALSLQTEGDRFDALHRWMRTNLGADLSLSALSAEAGM 240 Query: 268 SERSFSRHYAEATGLTPARAIERLRVEGARHLLSETRLPIKRISQRCGFGSEETMRRSFL 327 SERSFSRHY + TGLTPARA+ERLRVE AR +L+ET PIKRI+ CGF SEETMRRSFL Sbjct: 241 SERSFSRHYLKETGLTPARAVERLRVEAARQMLAETHRPIKRIASHCGFASEETMRRSFL 300 Query: 328 RLLSTTPQDYRARF 341 RLL++TPQDYR+RF Sbjct: 301 RLLASTPQDYRSRF 314