BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0278.p (580 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767483.1| crotonobetaine/carnitine-CoA ligase [Bradyrhizo... 927 0.0 ref|YP_001208929.1| crotonobetaine/carnitine-CoA ligase [Bradyrh... 889 0.0 ref|NP_950163.1| putative crotonobetaine/carnitine-CoA ligase [R... 882 0.0 ref|YP_001994277.1| AMP-dependent synthetase and ligase [Rhodops... 878 0.0 ref|YP_001243595.1| ATP-dependent AMP-binding family protein [Br... 875 0.0 >ref|NP_767483.1| crotonobetaine/carnitine-CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC46108.1| bll0843 [Bradyrhizobium japonicum USDA 110] Length = 526 Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/525 (84%), Positives = 476/525 (90%) Query: 55 MNNSKAVPGVVGPFAGLDVPWLLKMRAEVRRDHPFLIWAPFDAPARRWSYGEFHERVGAL 114 M N + G+VGPF GLDVPWLLKMRAEVR HPFLIWAPFDAPAR WSYGEFHERVGAL Sbjct: 1 MPNQQTAAGIVGPFDGLDVPWLLKMRAEVRSSHPFLIWAPFDAPARHWSYGEFHERVGAL 60 Query: 115 AAGLAKRGIRQGDYVLIHLDNCIEAIMSWFACVELGAIAVTTNTRSAAAEIEYFAGHCGA 174 AAGLAKRG+R G+YVLIHLDNCIEA+++WFACVELG IAVTTNTRSA AE+EYFA HCGA Sbjct: 61 AAGLAKRGVRPGEYVLIHLDNCIEALLAWFACVELGTIAVTTNTRSAPAEMEYFADHCGA 120 Query: 175 VAAITQPAYAELISANCKGLRWIAVTSHDAGQAPAQPPARGDSFEALSADGADRPRRPTD 234 VAAITQP+YAE+++ +C+ LRWIAVTSHDAG APAQP A GDSFEAL AD ADRPRR D Sbjct: 121 VAAITQPSYAEILAKHCRNLRWIAVTSHDAGAAPAQPVAHGDSFEALFADSADRPRRVAD 180 Query: 235 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQDLHALDVHQTYLPLFHTNALAY 294 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAK+NAAH+DLHA DVHQ YLPLFHTNALAY Sbjct: 181 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAKVNAAHEDLHAGDVHQAYLPLFHTNALAY 240 Query: 295 SMLASLWVGATCVIQPRFSASRFWPVALEHGSTWTSTIPFCMKALLEHEVPRNHKFRLWG 354 SMLA+LWVGATCVIQPRFSASRFW VA EHGSTWTSTIPFCMKALLE E+P++HKFRLWG Sbjct: 241 SMLATLWVGATCVIQPRFSASRFWRVAREHGSTWTSTIPFCMKALLEQEIPKDHKFRLWG 300 Query: 355 TAVNEPPAFGVFGIKIIGWWGMTETITHGIIGEVDQPNTPMSIGRAAPEYEIRITNDDGT 414 +AVNEPPAF FG+KIIGWWGMTETITHGI+GEVDQPN PMSIGRAAPEY+IRIT+DDG Sbjct: 301 SAVNEPPAFAAFGVKIIGWWGMTETITHGIVGEVDQPNIPMSIGRAAPEYQIRITDDDGR 360 Query: 415 PTGVGETGNLLIKGIPGLSLFAEYLHNEKATRESFDEHGYFITGDRVTMLERGYIKFGDR 474 PT VG+TGNL IKGI GLSLFAEYLHNEKATRESFD HG+F+TGDRV L G+I+FGDR Sbjct: 361 PTEVGDTGNLSIKGIRGLSLFAEYLHNEKATRESFDAHGFFLTGDRVERLANGFIRFGDR 420 Query: 475 SKDMLKVGGENVAASEIEQVIAVVPGVREAAVVAKKHPMLDEVPVVFIIPQAGVAALPAD 534 +KDMLKVGGENVAASEIEQVIA+VPGVREAAVVAKKHPMLDEVPVVFIIP GVA D Sbjct: 421 AKDMLKVGGENVAASEIEQVIALVPGVREAAVVAKKHPMLDEVPVVFIIPHGGVAGAAPD 480 Query: 535 LHDNVMTACRAALADFKVPREIRFVDEMPRSTLEKVAKAELRKML 579 LHD+VM ACR LADFKVPREIR VD+MPRSTLEKVAKAELRKM+ Sbjct: 481 LHDSVMAACRKGLADFKVPREIRLVDDMPRSTLEKVAKAELRKMV 525 >ref|YP_001208929.1| crotonobetaine/carnitine-CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL80714.1| putative ATP-dependent AMP-binding enzyme family; putative crotonobetaine/carnitine-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 524 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/526 (80%), Positives = 465/526 (88%), Gaps = 2/526 (0%) Query: 55 MNNSKAVPGVVGPFAGLDVPWLLKMRAEVRRDHPFLIWAPFDAPARRWSYGEFHERVGAL 114 MN PG V PF G+DVPWLLK+R+EVRRDHPFLIWAPFDAPARRWSYGEFH+RVGAL Sbjct: 1 MNGLTIAPGTVTPFDGMDVPWLLKLRSEVRRDHPFLIWAPFDAPARRWSYGEFHDRVGAL 60 Query: 115 AAGLAKRGIRQGDYVLIHLDNCIEAIMSWFACVELGAIAVTTNTRSAAAEIEYFAGHCGA 174 AAGL KRGI+ GD VLIHLDNCIEA+++WFACVELGA+AVTTNTRSAAAE+ YFA HC A Sbjct: 61 AAGLVKRGIKPGDAVLIHLDNCIEAMLAWFACVELGALAVTTNTRSAAAEMSYFADHCRA 120 Query: 175 VAAITQPAYAELISANCKGLRWIAVTSHDAGQAPAQPPARGDSFEALSADGADRPRRPTD 234 VAAITQPAYAE+ISA+C+GLRW+AV SHD GQ A GD FE L AD ADRPRR TD Sbjct: 121 VAAITQPAYAEMISAHCRGLRWLAVISHDPGQPDATAVGVGDRFETLFADSADRPRRATD 180 Query: 235 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQDLHALDVHQTYLPLFHTNALAY 294 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAK+NA H+DLH DVHQTYLPLFHTNALAY Sbjct: 181 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAKVNAVHEDLHQGDVHQTYLPLFHTNALAY 240 Query: 295 SMLASLWVGATCVIQPRFSASRFWPVALEHGSTWTSTIPFCMKALLEHEVPRNHKFRLWG 354 SMLA+LWVGA+CVIQPRFSASRFW VA+EHG TWTSTIPFCMKALL+ EVP++H+FRLWG Sbjct: 241 SMLATLWVGASCVIQPRFSASRFWSVAVEHGCTWTSTIPFCMKALLDQEVPKDHRFRLWG 300 Query: 355 TAVNEPPAFGVFGIKIIGWWGMTETITHGIIGEVDQPNTPMSIGRAAPEYEIRITNDDGT 414 TAV+EP AF FGIKIIGWWGMTETITHGI+GEVDQPNTPMSIGRAAPEY IRIT+DDG Sbjct: 301 TAVSEPTAFAKFGIKIIGWWGMTETITHGIVGEVDQPNTPMSIGRAAPEYTIRITDDDGR 360 Query: 415 PTGVGETGNLLIKGIPGLSLFAEYLHNEKATRESFDEHGYFITGDRVTMLERGYIKFGDR 474 PT VG+TGNL IKG+PGLSLF+EYL+NE+ATR SFD G+F+TGDRVT L+ G+IKFGDR Sbjct: 361 PTAVGDTGNLAIKGVPGLSLFSEYLYNEEATRTSFDADGFFLTGDRVTRLDNGFIKFGDR 420 Query: 475 SKDMLKVGGENVAASEIEQVIAVVPGVREAAVVAKKHPMLDEVPVVFIIPQAGVAALPAD 534 +KDMLKVGGENVAASEIEQVI VPGVRE AVVAKKHPMLDEVPV F+IPQAGVA + Sbjct: 421 TKDMLKVGGENVAASEIEQVIITVPGVRETAVVAKKHPMLDEVPVAFVIPQAGVAR--EE 478 Query: 535 LHDNVMTACRAALADFKVPREIRFVDEMPRSTLEKVAKAELRKMLE 580 L + V+ ACR LADFKVPRE+R VD MPRSTLEKVAKAELRK+L+ Sbjct: 479 LAEKVLAACRDGLADFKVPREVRLVDVMPRSTLEKVAKAELRKLLD 524 >ref|NP_950163.1| putative crotonobetaine/carnitine-CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE30269.1| putative crotonobetaine/carnitine-CoA ligase [Rhodopseudomonas palustris CGA009] Length = 528 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/526 (79%), Positives = 459/526 (87%), Gaps = 1/526 (0%) Query: 55 MNNSKAVPGVVGPFAGLDVPWLLKMRAEVRRDHPFLIWAPFDAPARRWSYGEFHERVGAL 114 M+ PGVV PF G+DVPWLLK+ AE RR+HPF+IW+PFD P+R WSYGEFH+RVGAL Sbjct: 1 MSQLIEAPGVVTPFDGMDVPWLLKLHAEARREHPFVIWSPFDGPSRSWSYGEFHDRVGAL 60 Query: 115 AAGLAKRGIRQGDYVLIHLDNCIEAIMSWFACVELGAIAVTTNTRSAAAEIEYFAGHCGA 174 AAGLA+RGI+QGDY+LIHLDNC+E +++WFAC ELGAIAVTTNTRSAAAEIEYFA HCGA Sbjct: 61 AAGLARRGIKQGDYLLIHLDNCVEFLLAWFACTELGAIAVTTNTRSAAAEIEYFADHCGA 120 Query: 175 VAAITQPAYAELISANCKGLRWIAVTSHDAGQA-PAQPPARGDSFEALSADGADRPRRPT 233 VAAITQPAYA+L++ANCK L+W+AV HD G A AQP A+G SF++L D DRPRRPT Sbjct: 121 VAAITQPAYADLVAANCKKLKWMAVIGHDPGAAIAAQPVAKGHSFDSLFGDSDDRPRRPT 180 Query: 234 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQDLHALDVHQTYLPLFHTNALA 293 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQ L A DVH YLPLFHTNALA Sbjct: 181 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQTLRADDVHLLYLPLFHTNALA 240 Query: 294 YSMLASLWVGATCVIQPRFSASRFWPVALEHGSTWTSTIPFCMKALLEHEVPRNHKFRLW 353 YSML++LWVG T V+QPRFSASRFW V+LEHG TW STIPFCMKALLEHEVP+ H+FRLW Sbjct: 241 YSMLSTLWVGGTVVVQPRFSASRFWKVSLEHGCTWLSTIPFCMKALLEHEVPKAHRFRLW 300 Query: 354 GTAVNEPPAFGVFGIKIIGWWGMTETITHGIIGEVDQPNTPMSIGRAAPEYEIRITNDDG 413 G+AV EPP F FGIKIIGWWGMTETITHGII E DQPNTPMSIGRAAPEY IRI DDG Sbjct: 301 GSAVAEPPPFASFGIKIIGWWGMTETITHGIIAEADQPNTPMSIGRAAPEYAIRIVGDDG 360 Query: 414 TPTGVGETGNLLIKGIPGLSLFAEYLHNEKATRESFDEHGYFITGDRVTMLERGYIKFGD 473 PT VG+TGNLLIKG+PGLSLF EYLHNE ATR+SFDEHGYFITGDRVT LE G I+FGD Sbjct: 361 APTRVGDTGNLLIKGVPGLSLFKEYLHNEAATRDSFDEHGYFITGDRVTRLEHGAIRFGD 420 Query: 474 RSKDMLKVGGENVAASEIEQVIAVVPGVREAAVVAKKHPMLDEVPVVFIIPQAGVAALPA 533 R+KDMLKVGGENVAASEIEQV+ VPGVREAAVVAKKHPMLDEVPVVF+IPQ GVAA P Sbjct: 421 RAKDMLKVGGENVAASEIEQVVITVPGVREAAVVAKKHPMLDEVPVVFVIPQGGVAAAPP 480 Query: 534 DLHDNVMTACRAALADFKVPREIRFVDEMPRSTLEKVAKAELRKML 579 D D + AC AALADFK PRE+R VD+MPRSTLEKVAKAELRKML Sbjct: 481 DFADRITAACTAALADFKRPREVRLVDDMPRSTLEKVAKAELRKML 526 >ref|YP_001994277.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] gb|ACF03802.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 528 Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/526 (79%), Positives = 458/526 (87%), Gaps = 1/526 (0%) Query: 55 MNNSKAVPGVVGPFAGLDVPWLLKMRAEVRRDHPFLIWAPFDAPARRWSYGEFHERVGAL 114 M+ PGVV PF G+DVPWLLK+ AE RR+HPF+IW+PFD P+R WSYGEFH+RVGAL Sbjct: 1 MSQLIEAPGVVTPFDGMDVPWLLKLHAEARREHPFVIWSPFDGPSRSWSYGEFHDRVGAL 60 Query: 115 AAGLAKRGIRQGDYVLIHLDNCIEAIMSWFACVELGAIAVTTNTRSAAAEIEYFAGHCGA 174 AAGLA+RGI+QGDY+LIHLDNC+E +++WFAC ELGAIAVTTNTRSAAAEIEYFA HCGA Sbjct: 61 AAGLARRGIKQGDYLLIHLDNCVEFLLAWFACTELGAIAVTTNTRSAAAEIEYFADHCGA 120 Query: 175 VAAITQPAYAELISANCKGLRWIAVTSHDAGQA-PAQPPARGDSFEALSADGADRPRRPT 233 VAAITQPAYA+L++ANCK L+W+AV HD G A AQP A+G SF++L D ADRP R T Sbjct: 121 VAAITQPAYADLVAANCKKLKWMAVIGHDPGAAIAAQPVAKGHSFDSLFGDSADRPHRRT 180 Query: 234 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQDLHALDVHQTYLPLFHTNALA 293 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQ L A DVH YLPLFHTNALA Sbjct: 181 DPLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQTLRADDVHLLYLPLFHTNALA 240 Query: 294 YSMLASLWVGATCVIQPRFSASRFWPVALEHGSTWTSTIPFCMKALLEHEVPRNHKFRLW 353 YSML++LWVG T V+QPRFSASRFW V+LEHG TW STIPFCMKALLEHEVP+ H+FRLW Sbjct: 241 YSMLSTLWVGGTVVVQPRFSASRFWKVSLEHGCTWLSTIPFCMKALLEHEVPKAHRFRLW 300 Query: 354 GTAVNEPPAFGVFGIKIIGWWGMTETITHGIIGEVDQPNTPMSIGRAAPEYEIRITNDDG 413 G+AV EPP F FGIKIIGWWGMTETITHGII E DQPNTPMSIGRAAPEY IRI DDG Sbjct: 301 GSAVAEPPPFASFGIKIIGWWGMTETITHGIIAEADQPNTPMSIGRAAPEYAIRIVGDDG 360 Query: 414 TPTGVGETGNLLIKGIPGLSLFAEYLHNEKATRESFDEHGYFITGDRVTMLERGYIKFGD 473 PT VG+TGNLLIKG+PGLSLF EYLHNE ATR+SFDEHGYFITGDRVT LE G I+FGD Sbjct: 361 APTRVGDTGNLLIKGVPGLSLFKEYLHNEAATRDSFDEHGYFITGDRVTRLEHGAIRFGD 420 Query: 474 RSKDMLKVGGENVAASEIEQVIAVVPGVREAAVVAKKHPMLDEVPVVFIIPQAGVAALPA 533 R+KDMLKVGGENVAASEIEQV+ VPGVREAAVVAKKHPMLDEVPVVF+IPQ GVAA P Sbjct: 421 RAKDMLKVGGENVAASEIEQVVITVPGVREAAVVAKKHPMLDEVPVVFVIPQGGVAAAPP 480 Query: 534 DLHDNVMTACRAALADFKVPREIRFVDEMPRSTLEKVAKAELRKML 579 D D + AC AALADFK PRE+R VD+MPRSTLEKVAKAELRKML Sbjct: 481 DFVDRITAACTAALADFKRPREVRLVDDMPRSTLEKVAKAELRKML 526 >ref|YP_001243595.1| ATP-dependent AMP-binding family protein [Bradyrhizobium sp. BTAi1] gb|ABQ39689.1| putative ATP-dependent AMP-binding enzyme family [Bradyrhizobium sp. BTAi1] Length = 524 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/527 (79%), Positives = 458/527 (86%), Gaps = 4/527 (0%) Query: 55 MNNSKAVPGVVGPFAGLDVPWLLKMRAEVRRDHPFLIWAPFDAPARRWSYGEFHERVGAL 114 MN G V PF G+DVPWLLK+R+E RRDHPFLIWAPFDAPAR WSYG FHERVGAL Sbjct: 1 MNGISMARGTVTPFDGMDVPWLLKLRSETRRDHPFLIWAPFDAPARHWSYGAFHERVGAL 60 Query: 115 AAGLAKRGIRQGDYVLIHLDNCIEAIMSWFACVELGAIAVTTNTRSAAAEIEYFAGHCGA 174 AAGL KRG++ GD VLIHLDNC+EA+++WFACVELGA+AVTTNTRSAAAE+ YFA HC A Sbjct: 61 AAGLVKRGVKPGDAVLIHLDNCVEAMLAWFACVELGALAVTTNTRSAAAEMSYFAEHCRA 120 Query: 175 VAAITQPAYAELISANCKGLRWIAVTSHDAGQAPAQPPARGDSFEALSADGADRPRRPTD 234 VAAITQPAYAE+ISA+C+G+RW+AV SHD GQ GD FE L AD ADRPRRP D Sbjct: 121 VAAITQPAYAEMISAHCRGIRWLAVISHDPGQPETAAVGVGDRFETLFADSADRPRRPVD 180 Query: 235 PLAPCSVQYTSGTTSRPKAVLWTHANALWGAKINAAHQDLHALDVHQTYLPLFHTNALAY 294 P APCSVQYTSGTTSRPKAVLWTHANALWGAK+NA HQDLH DVHQTYLPLFHTNALAY Sbjct: 181 PFAPCSVQYTSGTTSRPKAVLWTHANALWGAKVNAVHQDLHQHDVHQTYLPLFHTNALAY 240 Query: 295 SMLASLWVGATCVIQPRFSASRFWPVALEHGSTWTSTIPFCMKALLEHEVPRNHKFRLWG 354 SMLASLWVGA+CVIQPRFSASRFWPVALEHG TWTSTIPFCMKALL+ EVPR+HKFRLWG Sbjct: 241 SMLASLWVGASCVIQPRFSASRFWPVALEHGCTWTSTIPFCMKALLDQEVPRDHKFRLWG 300 Query: 355 TAVNEPPAFGVFGIKIIGWWGMTETITHGIIGEVDQPNTPMSIGRAAPEYEIRITNDDGT 414 TA++EP AF FGIKIIGWWGMTETITHGI+G++DQPNTPMSIGRAAPEY IRIT+DDG Sbjct: 301 TAMSEPMAFAKFGIKIIGWWGMTETITHGIVGDIDQPNTPMSIGRAAPEYTIRITDDDGR 360 Query: 415 PTGVGETGNLLIKGIPGLSLFAEYLHNEKATRESFDEHGYFITGDRVTMLERGYIKFGDR 474 PT VG TGNL IKG+PGLSLFAEYL+N +ATR SFD G+F+TGDRVT LE G+IKFGDR Sbjct: 361 PTDVGGTGNLAIKGVPGLSLFAEYLYNAEATRTSFDADGFFLTGDRVTRLENGFIKFGDR 420 Query: 475 SKDMLKVGGENVAASEIEQVIAVVPGVREAAVVAKKHPMLDEVPVVFIIPQAGVAALPAD 534 +KDMLKVGGENVAASEIEQVI VPGVRE AVVAKKHPMLDEVPV F+I Q G+ P D Sbjct: 421 TKDMLKVGGENVAASEIEQVIITVPGVRETAVVAKKHPMLDEVPVAFVIAQDGI---PRD 477 Query: 535 -LHDNVMTACRAALADFKVPREIRFVDEMPRSTLEKVAKAELRKMLE 580 L + V+ ACRA LADFKVPRE+R VDE+PRSTLEKVAKAELRK+L+ Sbjct: 478 QLPETVLAACRAGLADFKVPREVRLVDELPRSTLEKVAKAELRKLLD 524