BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0272.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767488.1| hypothetical protein blr0848 [Bradyrhizobium ja... 408 e-112 ref|ZP_01909232.1| hypothetical protein PPSIR1_01557 [Plesiocyst... 286 1e-75 ref|YP_001615029.1| hypothetical protein sce4386 [Sorangium cell... 283 2e-74 ref|YP_003692938.1| hypothetical protein Snov_0997 [Starkeya nov... 282 3e-74 ref|YP_546948.1| hypothetical protein Bpro_0083 [Polaromonas sp.... 274 9e-72 >ref|NP_767488.1| hypothetical protein blr0848 [Bradyrhizobium japonicum USDA 110] dbj|BAC46113.1| blr0848 [Bradyrhizobium japonicum USDA 110] Length = 245 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/244 (77%), Positives = 209/244 (85%) Query: 1 MQQHNIVSREEWIAARKALMIGEKELTQAREALSRQRRELPWVKVDKDYVFDGPGGKMTL 60 MQ H IVSRE+WIAARK LM EKELT ARE L+ +RR LPWVKVDKDYVFDGP GK+TL Sbjct: 1 MQPHQIVSREQWIAARKTLMAHEKELTAARERLAEERRALPWVKVDKDYVFDGPNGKVTL 60 Query: 61 GDLFKGRPQLVVQHVMFAPEWDAACKSCSFWADGFERMVPHLAARDTTMIAVSRAPLAKL 120 GDLFKGRPQLVVQHVMFAP+W+AACKSCSFWADG +RMVPHLAARDT +A+S AP+AKL Sbjct: 61 GDLFKGRPQLVVQHVMFAPDWEAACKSCSFWADGLDRMVPHLAARDTATVAISLAPIAKL 120 Query: 121 DAFKARMGWTFDWVSSGESDFNYDYGVSFTQAQIDAGTAKYNYGTTPLYGPELPGISVFC 180 + FKA MGWTFDWVSSG +DFN DYGV+F+ QI G YN+GTT +YGPELPGISVF Sbjct: 121 EDFKAPMGWTFDWVSSGSNDFNRDYGVTFSPEQIATGKPMYNFGTTKIYGPELPGISVFY 180 Query: 181 RDEQGSVFHTYSTFARGLDMMNAAYHYLDLTPLGRHEEGLPYPMDWVRLRDQYQPAPVQA 240 R+E G +FHTYS FARGLDMMNAAY YLDLTPLGRHEEGLPYPMDWVRLRDQY+P + Sbjct: 181 RNEAGEIFHTYSCFARGLDMMNAAYQYLDLTPLGRHEEGLPYPMDWVRLRDQYEPQATKG 240 Query: 241 SCCH 244 +CCH Sbjct: 241 ACCH 244 >ref|ZP_01909232.1| hypothetical protein PPSIR1_01557 [Plesiocystis pacifica SIR-1] gb|EDM77872.1| hypothetical protein PPSIR1_01557 [Plesiocystis pacifica SIR-1] Length = 234 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 132/233 (56%), Positives = 166/233 (71%) Query: 1 MQQHNIVSREEWIAARKALMIGEKELTQAREALSRQRRELPWVKVDKDYVFDGPGGKMTL 60 M Q IV+R EW+ AR AL+ EK +++ R+ L+ +RR +PWV+V+ DY F G+ L Sbjct: 1 MTQPRIVTRAEWLEARAALLAEEKRMSKLRDELNAKRRAMPWVRVEADYRFTDAAGEHAL 60 Query: 61 GDLFKGRPQLVVQHVMFAPEWDAACKSCSFWADGFERMVPHLAARDTTMIAVSRAPLAKL 120 +LF+GR QL+VQH MF P+WD C SCSFWAD ++ V HL ARD + +AVS AP+AKL Sbjct: 61 AELFEGRSQLIVQHFMFGPDWDEGCPSCSFWADNYDGTVVHLNARDISFVAVSNAPVAKL 120 Query: 121 DAFKARMGWTFDWVSSGESDFNYDYGVSFTQAQIDAGTAKYNYGTTPLYGPELPGISVFC 180 +A+KARMGW F W+SS S FN DY VSFT+A++DAG A YNY E PG SVF Sbjct: 121 EAYKARMGWGFRWLSSMGSTFNRDYQVSFTRAELDAGEAIYNYAKKGFPSTEAPGASVFT 180 Query: 181 RDEQGSVFHTYSTFARGLDMMNAAYHYLDLTPLGRHEEGLPYPMDWVRLRDQY 233 RDEQG +FHTYST+ARGLDM+N AYHY+DL P GR E+ LPY M W+R D Y Sbjct: 181 RDEQGRIFHTYSTYARGLDMLNGAYHYMDLVPKGRDEDELPYSMAWLRRHDSY 233 >ref|YP_001615029.1| hypothetical protein sce4386 [Sorangium cellulosum 'So ce 56'] emb|CAN94549.1| hypothetical protein sce4386 [Sorangium cellulosum 'So ce 56'] Length = 260 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 142/233 (60%), Positives = 167/233 (71%), Gaps = 1/233 (0%) Query: 1 MQQHNIVSREEWIAARKALMIGEKELTQAREALSRQRRELPWVKVDKDYVFDGPGGKMTL 60 M + I SREEW+AAR AL+ EKE + R+ALS RRELPWV+VDK YVFD P GK+TL Sbjct: 1 MSRAKIASREEWLAARLALLEREKEHDRRRDALSAARRELPWVRVDKAYVFDAPSGKLTL 60 Query: 61 GDLFKGRPQLVVQHVMFAPEWDAACKSCSFWADGFERMVPHLAARDTTMIAVSRAPLAKL 120 +LF R QL+V H MFAP W+ CKSCS+ AD + HLAARDT AVSRAPLAK+ Sbjct: 61 RELFGERRQLLVYHFMFAPSWEEGCKSCSYVADNIQGGHVHLAARDTAYCAVSRAPLAKI 120 Query: 121 DAFKARMGWTFDWVSSGESDFNYDYGVSFTQAQIDAGTAKYNYGTTPLYGPELPGISVFC 180 +AFKARMGWTF WVSSGE+DFN+DY VSF + + G +YNY PE PG+SVF Sbjct: 121 EAFKARMGWTFPWVSSGETDFNHDYHVSFREEERARGEMEYNYKKASSPFPEAPGLSVFA 180 Query: 181 RDEQGSVFHTYSTFARGLDMMNAAYHYLDLTPLGRHEEGLPYPMDWVRLRDQY 233 R E VFHTYST+ARGLD++ Y+YLDLTPLGR E LPY M WVR D+Y Sbjct: 181 R-EGDEVFHTYSTYARGLDVLIGTYNYLDLTPLGRDEAALPYTMAWVRHHDRY 232 >ref|YP_003692938.1| hypothetical protein Snov_0997 [Starkeya novella DSM 506] gb|ADH88319.1| protein of unknown function DUF899 thioredoxin family protein [Starkeya novella DSM 506] Length = 272 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/257 (52%), Positives = 170/257 (66%), Gaps = 14/257 (5%) Query: 1 MQQHNIVSREEWIAARKALMIGEKELTQAREALSRQRRELPWVKVDKDYVFDGPGGKMTL 60 + H IVSR+EW+A RK L+ EKELT R+ ++++RR LPWV+++KDYVFD P G+ TL Sbjct: 15 LANHRIVSRDEWLAERKTLLAHEKELTHLRDRVAQERRALPWVRIEKDYVFDTPAGRRTL 74 Query: 61 GDLFKGRPQLVVQHVMFAPEWDAACKSCSFWADGFERMVPHLAARDTTMIAVSRAPLAKL 120 +LF GR QL++QH MF P WD C SCSF AD + M HL RD T + VSRAPLA++ Sbjct: 75 AELFDGRRQLLIQHFMFGPGWDQGCPSCSFMADHADAMNIHLRQRDVTFVTVSRAPLAQI 134 Query: 121 DAFKARMGWTFDWVSSGESDFNYDYGVSFTQAQIDAGTAKYNYGTTPLYGPELPGISVFC 180 + FK RMGW FDWVSS SDFNYD+GVSFT Q+ G YNYG P E PGISVF Sbjct: 135 ERFKTRMGWRFDWVSSHGSDFNYDFGVSFTPEQLAEGRIHYNYGPWPYAFEEWPGISVFY 194 Query: 181 RDEQGSVFHTYSTFARGLDMMNAAYHYLDLTPLGRHEEGLPYPMDWVRLRDQYQPAP--- 237 RD+ G +FHTYST+ RG+++M Y+ LDL P GR E + M+WVR D+Y+ AP Sbjct: 195 RDDAGDIFHTYSTYGRGVEVMMGTYNMLDLVPKGRDERDVENKMEWVRHHDRYEAAPTER 254 Query: 238 -----------VQASCC 243 V+ SCC Sbjct: 255 ATGSVKDLFGSVKHSCC 271 >ref|YP_546948.1| hypothetical protein Bpro_0083 [Polaromonas sp. JS666] gb|ABE42050.1| protein of unknown function DUF899, thioredoxin-like protein [Polaromonas sp. JS666] Length = 265 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 131/247 (53%), Positives = 163/247 (65%), Gaps = 6/247 (2%) Query: 3 QHNIVSREEWIAARKALMIGEKELTQAREALSRQRRELPWVKVDKDYVFDGPGGKMTLGD 62 H + SRE W+A RK L+ EKELT+ R+ ++ QRR LPWV+++K+YVFD P G+ L D Sbjct: 15 NHPVASRERWLAERKTLLAQEKELTRLRDQIASQRRGLPWVRIEKNYVFDAPEGRRALAD 74 Query: 63 LFKGRPQLVVQHVMFAPEWDAACKSCSFWADGFERMVPHLAARDTTMIAVSRAPLAKLDA 122 LF+GR QL+VQH MF P W+ C SCSF AD M HL RD T +AVSRA LA+++ Sbjct: 75 LFEGRRQLMVQHFMFGPGWEQGCPSCSFMADHTAGMQIHLEHRDVTFVAVSRATLAEIER 134 Query: 123 FKARMGWTFDWVSSGESDFNYDYGVSFTQAQIDAGTAKYNYGTTPLYGPELPGISVFCRD 182 F+ RMGW F WVSS SDFNYD+ VSF + GT YNYG E PGIS+F +D Sbjct: 135 FRRRMGWQFKWVSSNSSDFNYDFHVSFKPEERVNGTVNYNYGMVEFPAEEAPGISLFYKD 194 Query: 183 EQGSVFHTYSTFARGLDMMNAAYHYLDLTPLGRHEEGLPYPMDWVRLRDQYQ------PA 236 + G VFHTYST+ RG+++M Y+ LDLTP GR E Y MDWVR D+Y+ PA Sbjct: 195 DAGEVFHTYSTYGRGVEVMMGTYNMLDLTPKGRDEHDGFYKMDWVRHHDRYETASAFTPA 254 Query: 237 PVQASCC 243 P ASCC Sbjct: 255 PEVASCC 261