BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0269.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_567201.1| regulatory protein ArsR [Rhodopseudomonas palus...   214   3e-54
ref|NP_767491.1| hypothetical protein blr0851 [Bradyrhizobium ja...   203   6e-51
ref|YP_486302.1| putative transcriptional regulator [Rhodopseudo...   203   7e-51
ref|YP_001243588.1| hypothetical protein BBta_7857 [Bradyrhizobi...   202   1e-50
ref|YP_001208922.1| hypothetical protein BRADO7125 [Bradyrhizobi...   201   3e-50

>ref|YP_567201.1| regulatory protein ArsR [Rhodopseudomonas palustris BisB5]
 gb|ABE37300.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris
           BisB5]
          Length = 126

 Score =  214 bits (546), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 115/139 (82%), Gaps = 14/139 (10%)

Query: 1   MPKTDLTTAPFAYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 60
           MPK +   APF+YDGLDRVIHEKARLGLL SLMAHPKGLAFADLK+LCGLTDGNLSRHLQ
Sbjct: 1   MPKAEANNAPFSYDGLDRVIHEKARLGLLASLMAHPKGLAFADLKKLCGLTDGNLSRHLQ 60

Query: 61  VLQEAGLVDVIKGYEGNRPHTTCRLTRSGRRRFLDYLAVLEQLVRDAARAAGSADKAGGK 120
           VLQEAGLVDVIKGYEGNRPHT CRLT++GRRRFLDYLAVLEQLVRDAA+A          
Sbjct: 61  VLQEAGLVDVIKGYEGNRPHTFCRLTKTGRRRFLDYLAVLEQLVRDAAKA---------- 110

Query: 121 AEKTAGKDDGAAGRLGIQP 139
               AG+DD A  RLGI P
Sbjct: 111 ----AGQDDAAPTRLGILP 125


>ref|NP_767491.1| hypothetical protein blr0851 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46116.1| blr0851 [Bradyrhizobium japonicum USDA 110]
          Length = 125

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 107/112 (95%), Gaps = 2/112 (1%)

Query: 1   MPKTDLTTAPFAYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 60
           M KTD  +APF+Y+GLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHL 
Sbjct: 2   MSKTD--SAPFSYEGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLA 59

Query: 61  VLQEAGLVDVIKGYEGNRPHTTCRLTRSGRRRFLDYLAVLEQLVRDAARAAG 112
           VLQEAGLV+V KGYEGNRPHTTCRLTR+GRRRFLDYLAVLE+LVRDAA+AAG
Sbjct: 60  VLQEAGLVEVTKGYEGNRPHTTCRLTRAGRRRFLDYLAVLERLVRDAAKAAG 111


>ref|YP_486302.1| putative transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gb|ABD07391.1| putative transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
          Length = 126

 Score =  203 bits (517), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 107/115 (93%)

Query: 1   MPKTDLTTAPFAYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 60
           MPK D   APF+Y+GLDRVIHEKARLG+LTSLMAHPKGLAFADLK+LCGLTDGNLSRHLQ
Sbjct: 1   MPKPDTNAAPFSYEGLDRVIHEKARLGMLTSLMAHPKGLAFADLKRLCGLTDGNLSRHLQ 60

Query: 61  VLQEAGLVDVIKGYEGNRPHTTCRLTRSGRRRFLDYLAVLEQLVRDAARAAGSAD 115
           VLQEAG+V+V KGYE NRP TTCRLT++GRR+FLDYL VLEQLVRDAA+AAGS+D
Sbjct: 61  VLQEAGMVEVSKGYEANRPLTTCRLTKTGRRQFLDYLTVLEQLVRDAAKAAGSSD 115


>ref|YP_001243588.1| hypothetical protein BBta_7857 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39682.1| transcriptional regulator, ArsR family [Bradyrhizobium sp. BTAi1]
          Length = 126

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 106/112 (94%), Gaps = 1/112 (0%)

Query: 1   MPKTDLTTAPFAYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 60
           M KTD   APF+YDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ
Sbjct: 1   MSKTD-GGAPFSYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 59

Query: 61  VLQEAGLVDVIKGYEGNRPHTTCRLTRSGRRRFLDYLAVLEQLVRDAARAAG 112
           VLQEAGLV+V KGYEGNRPHTTCRLT++GRRRFLDYLAVLE+LVRDAA AAG
Sbjct: 60  VLQEAGLVEVTKGYEGNRPHTTCRLTKAGRRRFLDYLAVLERLVRDAAAAAG 111


>ref|YP_001208922.1| hypothetical protein BRADO7125 [Bradyrhizobium sp. ORS 278]
 emb|CAL80707.1| conserved hypothetical protein; putative transcriptional regulatory
           protein, ArsR family [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 106/112 (94%), Gaps = 1/112 (0%)

Query: 1   MPKTDLTTAPFAYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 60
           M KTD  +APF+YDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ
Sbjct: 1   MSKTD-GSAPFSYDGLDRVIHEKARLGLLTSLMAHPKGLAFADLKQLCGLTDGNLSRHLQ 59

Query: 61  VLQEAGLVDVIKGYEGNRPHTTCRLTRSGRRRFLDYLAVLEQLVRDAARAAG 112
           VLQEAGLV+V KGYEGNRPHT+CRLT++GR RFLDYLAVLE+LVRDAA AAG
Sbjct: 60  VLQEAGLVEVTKGYEGNRPHTSCRLTKAGRHRFLDYLAVLERLVRDAAAAAG 111