BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0261.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204043.1| hypothetical protein BRADO1943 [Bradyrhizobi...    57   1e-06
ref|YP_571112.1| hypothetical protein RPD_3992 [Rhodopseudomonas...    55   4e-06
ref|YP_783105.1| hypothetical protein RPE_4200 [Rhodopseudomonas...    52   3e-05
ref|YP_487755.1| hypothetical protein RPB_4152 [Rhodopseudomonas...    50   1e-04
ref|YP_001238332.1| hypothetical protein BBta_2248 [Bradyrhizobi...    42   0.027

>ref|YP_001204043.1| hypothetical protein BRADO1943 [Bradyrhizobium sp. ORS 278]
 emb|CAL75806.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 37 AGKAKDKEAKARFRFLAKSTMLNASATAKRLQNSAENAADAYARAMKKAMEEPPPARKPA 96
          A KA+DK+AK RF+ LA+  +  ASA A+RL  SA+N AD+YARAM++A     P +  A
Sbjct: 36 AAKARDKDAKERFKLLAREVVEQASAAARRLLISADNVADSYARAMRQAAAVELPKKVEA 95

Query: 97 KK 98
          KK
Sbjct: 96 KK 97


>ref|YP_571112.1| hypothetical protein RPD_3992 [Rhodopseudomonas palustris BisB5]
 gb|ABE41211.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 124

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 5  EWPKPTSTPSSGKPQKRRPRPFRCTXAVWVARAGKAKDKEAKARFRFLAKSTMLNASATA 64
          +  K  +   +G  + RR          ++  A KAKD   KAR + LAK+ M    A A
Sbjct: 12 QLAKQQNKTLTGAAKARRDH--------YLGLAAKAKDATGKARAKELAKAAMEQGLAAA 63

Query: 65 KRLQNSAENAADAYARAMKKAME 87
          KRLQ +A+NAAD+YARAM+KA E
Sbjct: 64 KRLQVAADNAADSYARAMRKATE 86


>ref|YP_783105.1| hypothetical protein RPE_4200 [Rhodopseudomonas palustris BisA53]
 gb|ABJ08125.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 124

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%)

Query: 48 RFRFLAKSTMLNASATAKRLQNSAENAADAYARAMKKAMEEPP 90
          RF+ LAK  +   +A A RLQ SA+NAAD+YARAM+KAME  P
Sbjct: 47 RFKALAKEALAQGTAAASRLQMSADNAADSYARAMRKAMEAAP 89


>ref|YP_487755.1| hypothetical protein RPB_4152 [Rhodopseudomonas palustris HaA2]
 gb|ABD08844.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 131

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 33 WVARAGKAKDKEAKARFRFLAKSTMLNASATAKRLQNSAENAADAYARAMK 83
          ++  A KAKD   KAR + LAK+ M    A AKRLQ +A+NAAD+YARAM+
Sbjct: 32 YLGLAAKAKDAGGKARAKSLAKAAMEQGLAAAKRLQVAADNAADSYARAMR 82


>ref|YP_001238332.1| hypothetical protein BBta_2248 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34426.1| hypothetical protein BBta_2248 [Bradyrhizobium sp. BTAi1]
          Length = 135

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%)

Query: 37 AGKAKDKEAKARFRFLAKSTMLNASATAKRLQNSAENAADAY 78
          A KAKDK+AK R++ LA+     A+A A+RL  SA+N AD+Y
Sbjct: 36 AMKAKDKDAKERYKMLAREVAEQANAAARRLLISADNVADSY 77