BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0260.p (370 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01226968.1| putative DNA-binding protein [Aurantimonas ma... 320 2e-85 ref|ZP_08071266.1| regulatory protein LuxR [Methylocystis sp. AT... 285 8e-75 ref|YP_001523805.1| DNA-binding HTH domain-containing proteins [... 256 6e-66 ref|YP_001639465.1| regulatory protein LuxR [Methylobacterium ex... 248 1e-63 ref|YP_002421046.1| LuxR family transcriptional regulator [Methy... 247 3e-63 >ref|ZP_01226968.1| putative DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] gb|EAS50842.1| putative DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 381 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 176/356 (49%), Positives = 232/356 (65%), Gaps = 5/356 (1%) Query: 9 LIELAYEAAVVPELWPTVLHQVGAIARARGIVLLTAAPHDVRWVASPDMHDDTVAYVEGG 68 L++ YEAA V E WP +LH + + G LL P +RWV S M D + G Sbjct: 18 LVDRIYEAAFVGEFWPDILHDIAEEVGSCGGALLDLHPDGMRWVGSQMMSDLLADFAALG 77 Query: 69 WHERNGRLPPLLAANHAGFLRDIDVFDTPEEVQQDFQIREFFRPRGLGWGAGTAIPVPSG 128 E + R P LA+ H GF+ + DV E Q EF PRG GW AG+A+ VP+G Sbjct: 78 RPELDTRTPHGLASTHPGFITEFDVMTRAELATQPMYT-EFLWPRGYGWCAGSAVKVPTG 136 Query: 129 DVLIYSVEREYQHGPIEREAIEQLDALRPHLARAALLSARLGMERARAATESLAMLGLPA 188 D L+Y+ ER Y GP + A+++LDALRPHLARAA+LS RL +ERARAATE L ++GLP Sbjct: 137 DKLLYTFERRYDDGPFDSAAVDKLDALRPHLARAAVLSGRLELERARAATEMLGLVGLPG 196 Query: 189 AVLRRGGRLMAANTLFDRLVPDVMQDRAERLTLAATTADTLFAQALAALDQGLIGVEVRS 248 AVL R+ AAN LF+ L+PDV++D ++R+ + AD L A L +G +RS Sbjct: 197 AVLSLSHRIAAANGLFEALIPDVIRDGSKRVAFSDPGADALLE---AVLSEGR-ARSMRS 252 Query: 249 VPIAAQEDRPPLIVHLVPIHGAARDLFDRAAAIVIVTPVVPAEVPTAEVLQGLFDLTPAE 308 +P+AA+E PP+I HLVP+ AARD+F A+A++++TPV EVP+A++++GLFDLTPAE Sbjct: 253 IPLAAREGHPPMIAHLVPVRLAARDIFFSASAVLLITPVTRREVPSADIIEGLFDLTPAE 312 Query: 309 ARVARGIGEGRTVEAIAGAFGISRETVRNQLKAVLAKTGLGRQVELAGLLAGAKVP 364 +RVARGI G T++ +AG G S ETVR+QLKAV KTGL RQ EL LLAG VP Sbjct: 313 SRVARGIARGGTIQTLAGISGNSPETVRSQLKAVFMKTGLSRQAELVSLLAGLHVP 368 >ref|ZP_08071266.1| regulatory protein LuxR [Methylocystis sp. ATCC 49242] gb|EFY00778.1| regulatory protein LuxR [Methylocystis sp. ATCC 49242] Length = 365 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 151/357 (42%), Positives = 219/357 (61%), Gaps = 3/357 (0%) Query: 5 LHEHLIELAYEAAVVPELWPTVLHQVGAIARARGIVLLTAAPHDVRWVASPDMHDDTVAY 64 + + L++ Y ++ PELWP V+ ++ +A ARG VL A P + W +S + + AY Sbjct: 1 MDQDLVDRIYASSFAPELWPRVMDELSRMADARGGVLFAANPKAINWTSSDCVREHMAAY 60 Query: 65 VEGGWHER-NGRLPPLLAANHAGFLRDIDVFDTPEEVQQDFQIREFFRPRGLGWGAGTAI 123 GW ER R L+ +AGF+ + D++ TP+E++ D ++F RPRGLGW T + Sbjct: 61 ATEGWIERGRDRRARLMRLRYAGFMVESDIY-TPQELETDPTYQQFLRPRGLGWTVSTVM 119 Query: 124 PVPSGDVLIYSVEREYQHGPIEREAIEQLDALRPHLARAALLSARLGMERARAATESLAM 183 +P+GD L + R++ GP+E + +LD LRPHLAR AL+SAR+ +ERAR A+E+LA+ Sbjct: 120 SLPTGDDLFICLNRDFDRGPVEPAFVRRLDELRPHLARGALMSARMQLERARVASETLAL 179 Query: 184 LGLPAAVLRRGGRLMAANTLFDRLVPDVMQDRAERLTLAATTADTLFAQALAALDQGLIG 243 +GLPA V+ GR++A N L + L V + +L AD L A A+ L Sbjct: 180 IGLPALVIGEKGRVLATNHLMEALTEHVRWRAQDAFSLRDDAADQLLAGAMTTLHDDR-S 238 Query: 244 VEVRSVPIAAQEDRPPLIVHLVPIHGAARDLFDRAAAIVIVTPVVPAEVPTAEVLQGLFD 303 RS P+ E+R P+IVH+VPI GAARD+F AA+V++TPV + P E++Q LFD Sbjct: 239 APTRSFPVRGAEERAPMIVHVVPIRGAARDIFVGCAAVVVMTPVGTPQAPPVELVQSLFD 298 Query: 304 LTPAEARVARGIGEGRTVEAIAGAFGISRETVRNQLKAVLAKTGLGRQVELAGLLAG 360 LTPAEARVAR + G+++E IA +SR TVR ++ V+ KTG RQ E+ LL G Sbjct: 299 LTPAEARVARSLVVGKSLEEIAADGAVSRNTVRTHMRNVMEKTGCNRQAEVVSLLGG 355 >ref|YP_001523805.1| DNA-binding HTH domain-containing proteins [Azorhizobium caulinodans ORS 571] dbj|BAF86887.1| DNA-binding HTH domain-containing proteins [Azorhizobium caulinodans ORS 571] Length = 393 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 153/359 (42%), Positives = 216/359 (60%), Gaps = 10/359 (2%) Query: 9 LIELAYEAAVVPELWPTVLHQVGAIARARGIVLLTAAPHDVRWVASPDMHDDTVAYVEGG 68 L+ YEAA +PE WP VL + G L T D RW+AS ++ ++ G Sbjct: 36 LVGRIYEAAAIPEFWPGVLGSISRSIDGVGACLFTP---DGRWIASEAFAEEVDLFISRG 92 Query: 69 WHERNGRLPPLLAANHAGFLRDIDVFDTPEEVQQDFQIREFFRPRGLGWGAGTAIPVPSG 128 W ER+ L A+ GF+ D+D+F EE+ ++ ++ PRGLGWGA + + +P Sbjct: 93 WLERDTFNARLEASGRGGFVCDLDLFRR-EEIDREPVYADWLHPRGLGWGASSLMRLPHE 151 Query: 129 DVLIYSVEREYQHGPIEREAIEQLDALRPHLARAALLSARLGMERARAATESLAMLGLPA 188 + +VER GP+E + L+ L PH+ARAA++S+ L +ER +AA+ +L M+G+PA Sbjct: 152 RTVFINVERRRGRGPVETPFVRHLNQLHPHIARAAMISSHLALERTQAASSALQMVGVPA 211 Query: 189 AVLRRGGRLMAANTLFDRLVPDVMQDRAERLTLAATTADTLFAQALAALDQGL-IGVEVR 247 A+LR GGR+ AN LF +L P +++ + L LA A A LA ++ G +G R Sbjct: 212 ALLRPGGRVEHANGLFLQLQPQPVRECSAELVLANARAQAELALTLAEIEGGHGLG---R 268 Query: 248 SVPIAAQEDRPPLIVHLVPIHGAARDLFDRAAAIVIVTPVVPAEVPTAEVLQGLFDLTPA 307 ++ + AQ +R ++H++P+ GAARD+F A+V+ TPVV V A++L LFDLTPA Sbjct: 269 AIALPAQGERGAYVLHVMPVRGAARDVFSACTAMVLATPVVARPVLPADLLVSLFDLTPA 328 Query: 308 EARVARGIGEGRTVEAIAGAFGISRETVRNQLKAVLAKTGLGRQVELAGLLAGAKVPPG 366 EARVA I G TVE IA G+SRETVR+QLKA LAK GL RQ EL GLL A +P G Sbjct: 329 EARVAHKIAAGATVETIAETLGVSRETVRSQLKAALAKVGLTRQAELVGLL--ASIPAG 385 >ref|YP_001639465.1| regulatory protein LuxR [Methylobacterium extorquens PA1] gb|ABY30394.1| regulatory protein LuxR [Methylobacterium extorquens PA1] Length = 388 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 212/354 (59%), Gaps = 6/354 (1%) Query: 9 LIELAYEAAVVPELWPTVLHQVGAIARA-RGIVLLTAAPHDVRWVA-SPDMHDDTVAYVE 66 LI+ YEAA +PELW VL ++ A A + +++++ H +V SP+ + + E Sbjct: 30 LIDRIYEAAALPELWRDVLVELARFAGAPQAVMIVSTGTHFRDFVTTSPEFDPLVIDHFE 89 Query: 67 GGWHERNGRLPPLLAANHAGFLRDIDVFDTPEEVQQDFQIREFFRPRGLGWGAGTAIPVP 126 N R+ LLA H GFL D+DV T EE+ ++F PRG G G TA+ VP Sbjct: 90 --RFPDNVRIGRLLALRHPGFLNDLDVV-TEEEIATLPLYQDFLIPRGYGAGTATAVLVP 146 Query: 127 SGDVLIYSVEREYQHGPIEREAIEQLDALRPHLARAALLSARLGMERARAATESLAMLGL 186 SGD +I ER G + + L++LRPHLARAALLSARL MER T +L LGL Sbjct: 147 SGDSVIVHCERARAEGDFGPQILSALNSLRPHLARAALLSARLEMERVSTTTRTLEALGL 206 Query: 187 PAAVLRRGGRLMAANTLFDRLVPDVMQDRAERLTLAATTADTLFAQALAALDQGLIGVEV 246 PAAVL GGR++ AN ++P + D+ RL + AD L +A+A + V Sbjct: 207 PAAVLGSGGRVIDANPSLVAMMPHTLSDQPLRLAVVDPAADRLLREAVAQ-SASTQAMPV 265 Query: 247 RSVPIAAQEDRPPLIVHLVPIHGAARDLFDRAAAIVIVTPVVPAEVPTAEVLQGLFDLTP 306 RS+PIAA +RPP+I+HLVPI GAA D+F RA ++I TPVV +VP+A+V+QGLFDLTP Sbjct: 266 RSIPIAASGERPPVILHLVPIRGAAHDVFVRARFVLIATPVVAQDVPSADVVQGLFDLTP 325 Query: 307 AEARVARGIGEGRTVEAIAGAFGISRETVRNQLKAVLAKTGLGRQVELAGLLAG 360 AEAR+A I G A GI+ T R+ L+ + KTG+ RQ EL GLLAG Sbjct: 326 AEARLAALIAAGDAPAPAAAKLGITPSTARSVLRRIFQKTGVSRQAELVGLLAG 379 >ref|YP_002421046.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK83118.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 388 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 161/356 (45%), Positives = 214/356 (60%), Gaps = 10/356 (2%) Query: 9 LIELAYEAAVVPELWPTVLHQVGAIARA-RGIVLLTAAPHDVRWVA-SPDMHDDTVAYVE 66 LI+ YEAA +PELW VL ++ A A + +++++ H +V SP+ + + E Sbjct: 30 LIDRIYEAAALPELWREVLVELARFAGAPQAVMIVSTGTHFRDFVTTSPEFDPLVIDHFE 89 Query: 67 GGWHERNGRLPPLLAANHAGFLRDIDVFDTPEEVQQDFQIREFFRPRGLGWGAGTAIPVP 126 N R+ LLA H GFL D+DV T EE+ ++F PRG G G TA+ VP Sbjct: 90 --RFPDNVRIGRLLALRHPGFLNDLDVV-TEEEIATLPLYQDFLIPRGYGAGTATAVLVP 146 Query: 127 SGDVLIYSVEREYQHGPIEREAIEQLDALRPHLARAALLSARLGMERARAATESLAMLGL 186 SGD +I ER G + + L++LRPHLARAALLSARL MER T +L LGL Sbjct: 147 SGDSVIVHCERARAEGDFGPQILSALNSLRPHLARAALLSARLEMERVSTTTRTLEALGL 206 Query: 187 PAAVLRRGGRLMAANTLFDRLVPDVMQDRAERLTLAATTADTLFAQALA--ALDQGLIGV 244 PAAVL GGR++ AN ++P + D+ RL + AD L +A+A A Q + Sbjct: 207 PAAVLGSGGRVIDANPSLVAMMPHTLSDQPLRLAVVDPAADRLLREAVAQSAAPQAM--- 263 Query: 245 EVRSVPIAAQEDRPPLIVHLVPIHGAARDLFDRAAAIVIVTPVVPAEVPTAEVLQGLFDL 304 VRS+PIAA +RPP+I+HLVPI GAA D+F RA ++I TPVV +VP+A+V+QGLFDL Sbjct: 264 PVRSIPIAASGERPPVILHLVPIRGAAHDVFVRARFVLIATPVVAQDVPSADVVQGLFDL 323 Query: 305 TPAEARVARGIGEGRTVEAIAGAFGISRETVRNQLKAVLAKTGLGRQVELAGLLAG 360 TPAEAR+A I G A GI+ T R+ L+ + KTG+ RQ EL GLLAG Sbjct: 324 TPAEARLAALIAAGDAPAPAAAKLGITPSTARSVLRRIFQKTGVSRQAELVGLLAG 379