BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0255.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773864.1| transcription elongation factor regulatory prot... 276 6e-73 ref|YP_568878.1| transcription elongation factor regulatory prot... 258 2e-67 ref|NP_435325.1| transcription elongation factor regulatory prot... 255 1e-66 ref|YP_002281655.1| transcription elongation factor regulatory p... 255 2e-66 ref|YP_002976201.1| transcription elongation factor regulatory p... 254 3e-66 >ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 276 bits (707), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 135/160 (84%), Positives = 149/160 (93%) Query: 1 LSVAFTKEESAETASETLLPDRPISPHPNLVTEAGRKALEHEFQAAREAFEAAQQLDDVN 60 +SVAFTKEESAETASETLLPDRPISPHPNLVTEAG +AL+ + Q AREA+EAAQ +DDVN Sbjct: 1 MSVAFTKEESAETASETLLPDRPISPHPNLVTEAGLQALQTQLQEAREAYEAAQAIDDVN 60 Query: 61 ERRRQSAVPLRDVRYLTERLRTAQVVPDPASTETVAFGSTVTFSRADGRVQTYRIVGEDE 120 E+RRQSAVPLRD RYLTERLRTAQV+P PAST+TVAFGSTVTFSR DGRVQTYRIVGEDE Sbjct: 61 EKRRQSAVPLRDARYLTERLRTAQVIPTPASTDTVAFGSTVTFSRPDGRVQTYRIVGEDE 120 Query: 121 ADPKAGSISFVSPVARSLMGKAVGDLAGAGDQELEIVAIA 160 ADPKAGSISFVSPVARSL+GKAVGD+ GAG QE+EI++I Sbjct: 121 ADPKAGSISFVSPVARSLIGKAVGDVVGAGTQEIEILSIG 160 >ref|YP_568878.1| transcription elongation factor regulatory protein [Rhodopseudomonas palustris BisB5] gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris BisB5] Length = 160 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/160 (78%), Positives = 141/160 (88%) Query: 1 LSVAFTKEESAETASETLLPDRPISPHPNLVTEAGRKALEHEFQAAREAFEAAQQLDDVN 60 +SVAFTKEESAETASET+LPDRPISPHPNLVT AG KALE + QAAR+A EAA+ ++DVN Sbjct: 1 MSVAFTKEESAETASETMLPDRPISPHPNLVTAAGMKALEAQLQAARDACEAAKAIEDVN 60 Query: 61 ERRRQSAVPLRDVRYLTERLRTAQVVPDPASTETVAFGSTVTFSRADGRVQTYRIVGEDE 120 ERRRQ A+P RD RY R+RTAQ++ DP + + VAFGSTVTF RADGRVQTYRIVGEDE Sbjct: 61 ERRRQEAIPSRDARYFATRVRTAQLIADPTTADVVAFGSTVTFKRADGRVQTYRIVGEDE 120 Query: 121 ADPKAGSISFVSPVARSLMGKAVGDLAGAGDQELEIVAIA 160 ADPK GSISFVSPVAR LMGKAVGD+AGAG+QELEI+AIA Sbjct: 121 ADPKVGSISFVSPVARLLMGKAVGDVAGAGEQELEIIAIA 160 >ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium meliloti 1021] gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] gb|AEG06732.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C] gb|AEH82740.1| conserved hypothetical protein [Sinorhizobium meliloti SM11] Length = 160 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 140/160 (87%) Query: 1 LSVAFTKEESAETASETLLPDRPISPHPNLVTEAGRKALEHEFQAAREAFEAAQQLDDVN 60 +SVAF KEESAETASETLLPDRPISPHPNLVTE G KALE Q AREAF+A ++DVN Sbjct: 1 MSVAFIKEESAETASETLLPDRPISPHPNLVTETGLKALELHLQQAREAFDATSTIEDVN 60 Query: 61 ERRRQSAVPLRDVRYLTERLRTAQVVPDPASTETVAFGSTVTFSRADGRVQTYRIVGEDE 120 ERRRQSA PLR++RY ER+RTAQ+VPDPAS + VAFGSTVTFSR DGRVQ YRIVGEDE Sbjct: 61 ERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVTFSRDDGRVQKYRIVGEDE 120 Query: 121 ADPKAGSISFVSPVARSLMGKAVGDLAGAGDQELEIVAIA 160 ADPKAGSIS+VSPVAR LMGK+VGD+A GDQELEI+AI+ Sbjct: 121 ADPKAGSISYVSPVARVLMGKSVGDVASVGDQELEILAIS 160 >ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/160 (79%), Positives = 143/160 (89%) Query: 1 LSVAFTKEESAETASETLLPDRPISPHPNLVTEAGRKALEHEFQAAREAFEAAQQLDDVN 60 ++VAFTKEES ETASETLLPDRP+SPH NLVTEAG KALE +FQ AREA++AA ++DVN Sbjct: 1 MAVAFTKEESFETASETLLPDRPVSPHLNLVTEAGLKALELQFQQAREAYDAASTVEDVN 60 Query: 61 ERRRQSAVPLRDVRYLTERLRTAQVVPDPASTETVAFGSTVTFSRADGRVQTYRIVGEDE 120 ERRRQ+A PLRD+RYL RLRTAQ++ DPAST+TVAFGSTVTFSR DGRVQTYRIVGEDE Sbjct: 61 ERRRQAAGPLRDLRYLAARLRTAQLMADPASTDTVAFGSTVTFSRDDGRVQTYRIVGEDE 120 Query: 121 ADPKAGSISFVSPVARSLMGKAVGDLAGAGDQELEIVAIA 160 ADPKAGSIS+VSPVAR LMGKAVGD+ G QELEI+AIA Sbjct: 121 ADPKAGSISYVSPVARLLMGKAVGDVVETGGQELEIIAIA 160 >ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 141/160 (88%) Query: 1 LSVAFTKEESAETASETLLPDRPISPHPNLVTEAGRKALEHEFQAAREAFEAAQQLDDVN 60 ++VAFTKEES ETASETLLPDRPIS HPNLVTEAG KALE +FQ AREA++AA ++DVN Sbjct: 1 MAVAFTKEESFETASETLLPDRPISAHPNLVTEAGLKALELQFQQAREAYDAASPIEDVN 60 Query: 61 ERRRQSAVPLRDVRYLTERLRTAQVVPDPASTETVAFGSTVTFSRADGRVQTYRIVGEDE 120 ERRRQ+A PLRD+RYLT RLRTAQ++P P S +TVAFGSTVTF R DGRVQTYRIVGEDE Sbjct: 61 ERRRQAASPLRDLRYLTARLRTAQLMPSPTSIDTVAFGSTVTFRRDDGRVQTYRIVGEDE 120 Query: 121 ADPKAGSISFVSPVARSLMGKAVGDLAGAGDQELEIVAIA 160 ADPKAGSIS+VSPVAR LMGKAVGD+ G QELEI+AIA Sbjct: 121 ADPKAGSISYVSPVARLLMGKAVGDMVETGGQELEIIAIA 160