BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0244.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_778295.1| Formyl-CoA transferase [Burkholderia ambifaria ... 496 e-138 ref|YP_001816116.1| L-carnitine dehydratase/bile acid-inducible ... 491 e-137 ref|NP_891210.1| CaiB/BaiF family protein [Bordetella bronchisep... 483 e-134 ref|NP_886339.1| CaiB/BaiF family protein [Bordetella parapertus... 483 e-134 ref|YP_003321228.1| Formyl-CoA transferase [Sphaerobacter thermo... 402 e-110 >ref|YP_778295.1| Formyl-CoA transferase [Burkholderia ambifaria AMMD] gb|ABI91961.1| Formyl-CoA transferase [Burkholderia ambifaria AMMD] Length = 418 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/395 (59%), Positives = 293/395 (74%) Query: 8 PLSGIRVLDLCRVVSGPFATMQLGDLGADIVKIEDPGQGDESRRYGPPFIGGESAYFLSV 67 PL GIR++DL RVVSGPFATM L DLGAD++KIE+P GD+SR +GPPF+ GESAYFLSV Sbjct: 16 PLEGIRIVDLTRVVSGPFATMHLADLGADVIKIEEPTSGDDSRAFGPPFVAGESAYFLSV 75 Query: 68 NRNKRSCAIDLKSPAGRDAALDLASVADVVIENFRPGTLDKWGLGFDALRARKGDIILCS 127 NRNKRSCAIDLKS AGR L + ADVV++NFRPG + + GL + LR+ +I CS Sbjct: 76 NRNKRSCAIDLKSDAGRQILLRMIETADVVVDNFRPGAMKRLGLDHETLRSINPRLICCS 135 Query: 128 ISGFGRTGDDAARPGYDLILQGESGVMDITGDPDGPPTKVGTSIADLVTGLYASHSVLAA 187 ISGFG G DA RPGYDLI+QGE+GVMDITGDP G PTKVGTSIAD++ GL+A +L+A Sbjct: 136 ISGFGSQGPDAQRPGYDLIVQGEAGVMDITGDPSGQPTKVGTSIADMIAGLFAVQGILSA 195 Query: 188 LMRKSRTGEGGRVDVSMLDAMASLLTFNAGMYFASGQSPKRRGNVHPTISPYEPFETSDG 247 L ++RTG V +SMLDA+ASLLTFNAG+YF++G SP RRGN HPTI PYE F+ SDG Sbjct: 196 LYERNRTGVARSVQISMLDALASLLTFNAGIYFSTGASPTRRGNEHPTICPYETFQASDG 255 Query: 248 WINVGVANDKFWAAFCGVVGRPELREDVRFASAPKRAASRNELVAILSPIFARRSRADWL 307 WIN+GVANDKFW FC V +L +D RFA+AP R ++R+EL +++ + SRADW+ Sbjct: 256 WINLGVANDKFWKLFCEVANASDLVDDPRFATAPLRVSNRHELRPLVAALLRGNSRADWV 315 Query: 308 QALGAAGIPCGAIKSVGEVCETPQLTQRGMVQTVRHRAAGVVRFIARPTRFGDEPPAPST 367 + LG AG+PCG I++VGEVCE QLT+RGM+ ++ H AGVV+ I P R D P ++ Sbjct: 316 EKLGNAGVPCGLIRTVGEVCEAAQLTERGMILSMDHPIAGVVKNITNPVRLDDAPMTHAS 375 Query: 368 PPPMLGEHTSEVFAEWLGWSDSRLERSAVEGAFGD 402 PPPMLG+HT E+ LG S +L+ A G D Sbjct: 376 PPPMLGQHTREILESLLGLSAHQLDELAARGVIRD 410 >ref|YP_001816116.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia ambifaria MC40-6] gb|ACB68563.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia ambifaria MC40-6] Length = 418 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/395 (58%), Positives = 292/395 (73%) Query: 8 PLSGIRVLDLCRVVSGPFATMQLGDLGADIVKIEDPGQGDESRRYGPPFIGGESAYFLSV 67 PL+GIR++DL RVVSGPFATM L DLGAD++KIE+P GD+SR +GPPF+ GESAYFLSV Sbjct: 16 PLAGIRIIDLTRVVSGPFATMHLADLGADVIKIEEPTSGDDSRAFGPPFVAGESAYFLSV 75 Query: 68 NRNKRSCAIDLKSPAGRDAALDLASVADVVIENFRPGTLDKWGLGFDALRARKGDIILCS 127 NRNKRSCAIDLKS AGR L + ADVV++NFRPG + + GL + LR+ +I CS Sbjct: 76 NRNKRSCAIDLKSDAGRQILLRMIETADVVVDNFRPGAMKRLGLDHETLRSINPRLICCS 135 Query: 128 ISGFGRTGDDAARPGYDLILQGESGVMDITGDPDGPPTKVGTSIADLVTGLYASHSVLAA 187 ISGFG G DA RPGYDLI+QGE+GVMDITGDP G PTKVGTSIAD++ GL+A +L+A Sbjct: 136 ISGFGSQGPDAQRPGYDLIVQGEAGVMDITGDPSGQPTKVGTSIADMIAGLFAVQGILSA 195 Query: 188 LMRKSRTGEGGRVDVSMLDAMASLLTFNAGMYFASGQSPKRRGNVHPTISPYEPFETSDG 247 L ++RTG V +SMLDA+ASLLTFNAG+YF++G SP RRGN HPTI PYE F+ SDG Sbjct: 196 LYERNRTGVARSVQISMLDALASLLTFNAGIYFSTGSSPTRRGNEHPTICPYETFQASDG 255 Query: 248 WINVGVANDKFWAAFCGVVGRPELREDVRFASAPKRAASRNELVAILSPIFARRSRADWL 307 WIN+GVANDKFW FC V +L +D FA+AP R ++R+EL +++ + SRA W+ Sbjct: 256 WINLGVANDKFWKLFCEVANASDLVDDPCFATAPLRVSNRHELRPLVAALLRGNSRAYWV 315 Query: 308 QALGAAGIPCGAIKSVGEVCETPQLTQRGMVQTVRHRAAGVVRFIARPTRFGDEPPAPST 367 + LG AG+PCG I++VGEVCE QLT+RGM+ ++ H AGVV+ I P R D P ++ Sbjct: 316 EKLGNAGVPCGLIRTVGEVCEAAQLTERGMILSMDHPIAGVVKNITNPVRLDDAPMTHAS 375 Query: 368 PPPMLGEHTSEVFAEWLGWSDSRLERSAVEGAFGD 402 PPPMLG+HT E+ LG S +L+ A G D Sbjct: 376 PPPMLGQHTREILESLLGLSAHQLDELAARGVIRD 410 >ref|NP_891210.1| CaiB/BaiF family protein [Bordetella bronchiseptica RB50] emb|CAE35040.1| CaiB/BaiF family protein [Bordetella bronchiseptica RB50] Length = 402 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/391 (60%), Positives = 290/391 (74%) Query: 8 PLSGIRVLDLCRVVSGPFATMQLGDLGADIVKIEDPGQGDESRRYGPPFIGGESAYFLSV 67 PL GIRVLDL RVVSGPF TM LGDLGA+++KIE+P GD+SR +GPPF GGESAYFLSV Sbjct: 3 PLHGIRVLDLTRVVSGPFCTMLLGDLGAEVIKIEEPVHGDDSRAFGPPFSGGESAYFLSV 62 Query: 68 NRNKRSCAIDLKSPAGRDAALDLASVADVVIENFRPGTLDKWGLGFDALRARKGDIILCS 127 NRNKRSCAIDLK P G++ LA +DVVI+NFRPGT+ + GLG+DALRA ++ CS Sbjct: 63 NRNKRSCAIDLKQPEGKELLRALARASDVVIDNFRPGTMARLGLGYDALRAANPRLVSCS 122 Query: 128 ISGFGRTGDDAARPGYDLILQGESGVMDITGDPDGPPTKVGTSIADLVTGLYASHSVLAA 187 I+GFG +G DA RPGYDLI+QGESG+MDITGDP G PTK+GTSIADL+TG +AS ++ AA Sbjct: 123 ITGFGDSGPDAQRPGYDLIIQGESGIMDITGDPAGLPTKIGTSIADLITGQFASQAITAA 182 Query: 188 LMRKSRTGEGGRVDVSMLDAMASLLTFNAGMYFASGQSPKRRGNVHPTISPYEPFETSDG 247 L+ ++ +G+G V ++MLD MASLLTFNAG+YF +G SP RRGN HPTI+PYE F+ +DG Sbjct: 183 LLERASSGQGRHVGIAMLDCMASLLTFNAGIYFTTGASPTRRGNAHPTIAPYETFQAADG 242 Query: 248 WINVGVANDKFWAAFCGVVGRPELREDVRFASAPKRAASRNELVAILSPIFARRSRADWL 307 W+N+GVANDKFW FCGV+ RP+L +D R+A A R A R ELV ++ + A + RA W+ Sbjct: 243 WLNIGVANDKFWQLFCGVIARPDLADDPRYARAADRVALRAELVPRIAALIAAKPRAYWI 302 Query: 308 QALGAAGIPCGAIKSVGEVCETPQLTQRGMVQTVRHRAAGVVRFIARPTRFGDEPPAPST 367 AL AG+PCG I+SV EVCE QL RGMV + H +AG VR IA P RF A Sbjct: 303 AALREAGVPCGDIRSVAEVCEAEQLVSRGMVFDMPHPSAGQVRNIASPFRFDGAGTAAHR 362 Query: 368 PPPMLGEHTSEVFAEWLGWSDSRLERSAVEG 398 PP+LGEHT+ + E G R+ A G Sbjct: 363 APPLLGEHTAAILCEHAGLRPERVADLAARG 393 >ref|NP_886339.1| CaiB/BaiF family protein [Bordetella parapertussis 12822] emb|CAE39487.1| CaiB/BaiF family protein [Bordetella parapertussis] Length = 402 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/391 (59%), Positives = 290/391 (74%) Query: 8 PLSGIRVLDLCRVVSGPFATMQLGDLGADIVKIEDPGQGDESRRYGPPFIGGESAYFLSV 67 PL GIRVL+L RVVSGPF TM LGDLGA+++KIE+P GD+SR +GPPF GGESAYFLSV Sbjct: 3 PLHGIRVLELTRVVSGPFCTMLLGDLGAEVIKIEEPVHGDDSRAFGPPFSGGESAYFLSV 62 Query: 68 NRNKRSCAIDLKSPAGRDAALDLASVADVVIENFRPGTLDKWGLGFDALRARKGDIILCS 127 NRNKRSCAIDLK P G++ LA +DVVI+NFRPGT+ + GLG+DALRA ++ CS Sbjct: 63 NRNKRSCAIDLKQPEGKELLRALARASDVVIDNFRPGTMARLGLGYDALRAANPRLVSCS 122 Query: 128 ISGFGRTGDDAARPGYDLILQGESGVMDITGDPDGPPTKVGTSIADLVTGLYASHSVLAA 187 I+GFG +G DA RPGYDLI+QGESG+MDITGDP G PTK+GTSIADL+TG +AS ++ AA Sbjct: 123 ITGFGDSGPDAQRPGYDLIIQGESGIMDITGDPAGLPTKIGTSIADLITGQFASQAITAA 182 Query: 188 LMRKSRTGEGGRVDVSMLDAMASLLTFNAGMYFASGQSPKRRGNVHPTISPYEPFETSDG 247 L+ ++ +G+G V ++MLD MASLLTFNAG+YF +G SP RRGN HPTI+PYE F+ +DG Sbjct: 183 LLERASSGQGRHVGIAMLDCMASLLTFNAGIYFTTGASPTRRGNAHPTIAPYETFQAADG 242 Query: 248 WINVGVANDKFWAAFCGVVGRPELREDVRFASAPKRAASRNELVAILSPIFARRSRADWL 307 W+N+GVANDKFW FCGV+ RP+L +D R+A A R A R ELV ++ + A + RA W+ Sbjct: 243 WLNIGVANDKFWQLFCGVIARPDLADDPRYARAADRVALRAELVPRIAALIAAKPRAYWI 302 Query: 308 QALGAAGIPCGAIKSVGEVCETPQLTQRGMVQTVRHRAAGVVRFIARPTRFGDEPPAPST 367 AL AG+PCG I+SV EVCE QL RGMV + H +AG VR IA P RF A Sbjct: 303 AALREAGVPCGDIRSVAEVCEAEQLVSRGMVFDMPHPSAGQVRNIASPFRFDGAGTAAHR 362 Query: 368 PPPMLGEHTSEVFAEWLGWSDSRLERSAVEG 398 PP+LGEHT+ + E G R+ A G Sbjct: 363 APPLLGEHTAAILCEHAGLQPERVADLAARG 393 >ref|YP_003321228.1| Formyl-CoA transferase [Sphaerobacter thermophilus DSM 20745] gb|ACZ40406.1| Formyl-CoA transferase [Sphaerobacter thermophilus DSM 20745] Length = 395 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/379 (49%), Positives = 259/379 (68%), Gaps = 1/379 (0%) Query: 8 PLSGIRVLDLCRVVSGPFATMQLGDLGADIVKIEDPGQGDESRRYGPPFIGGESAYFLSV 67 P +G+RVLDL R++SGP+ TM L D GA+++K+E PG GD++R +GPPF+GGES YFLS+ Sbjct: 4 PFAGVRVLDLSRILSGPYCTMVLADFGAEVIKVERPGAGDDTRHWGPPFVGGESGYFLSI 63 Query: 68 NRNKRSCAIDLKSPAGRDAALDLASVADVVIENFRPGTLDKWGLGFDALRARKGDIILCS 127 NRNK+S +D+ +P GR+ LA ADV IENFRPGT D+ G+G++ LR II CS Sbjct: 64 NRNKKSITVDMSTPEGREIIYRLARTADVAIENFRPGTADRLGIGYERLRQENPSIIYCS 123 Query: 128 ISGFGRTGDDAARPGYDLILQGESGVMDITGDPDGPPTKVGTSIADLVTGLYASHSVLAA 187 ISGFG+TG RPGYD + Q SG+M ITG+PDGPP K G SIAD+ G++A ++ AA Sbjct: 124 ISGFGQTGPYRDRPGYDALAQAMSGMMAITGEPDGPPMKHGMSIADIGAGMWAVFAIAAA 183 Query: 188 LMRKSRTGEGGRVDVSMLDAMASLLTFNAGMYFASGQSPKRRGNVHPTISPYEPFETSDG 247 L + RTGEG +DVS+LDA S LT+ AG YFASG++P R G+ HP I PY+PF T+DG Sbjct: 184 LYHRERTGEGQAIDVSLLDAQLSWLTYAAGNYFASGKNPGRYGSAHPNIVPYQPFATADG 243 Query: 248 WINVGVANDKFWAAFCGVVGRPELREDVRFASAPKRAASRNELVAILSPIFARRSRADWL 307 +I + V ND+ W FC GRPEL + F + +R +R ++VA + I A+R+ A+W+ Sbjct: 244 YIMLAVGNDRLWQQFCQAAGRPELADQPGFRTNAERVTNRADVVATVGAIMAQRTTAEWM 303 Query: 308 QALGAAGIPCGAIKSVGEVCETPQLTQRGMVQTVRHRAAGVVRFIARPTRFGDEPPAPST 367 + L AG+P G I +V ++ P + R MV T++H AG V+ + P + D P + Sbjct: 304 ELLERAGVPAGPINTVEQILHDPHVLAREMVVTLQHPTAGEVKTVGIPAKLSDTPGTVRS 363 Query: 368 PPPMLGEHTSEVFAEWLGW 386 PP+LG+HT EV AE LG+ Sbjct: 364 APPLLGQHTDEVLAE-LGY 381