BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0231.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769733.1| hypothetical protein blr3093 [Bradyrhizobium ja... 483 e-134 ref|ZP_00055961.1| COG0477: Permeases of the major facilitator s... 274 2e-71 emb|CAM74470.1| major facilitator superfamily [Magnetospirillum ... 260 3e-67 ref|YP_423330.1| major facilitator superfamily permease [Magneto... 258 9e-67 gb|ACF09909.1| permease [uncultured marine group III euryarchaeo... 253 5e-65 >ref|NP_769733.1| hypothetical protein blr3093 [Bradyrhizobium japonicum USDA 110] dbj|BAC48358.1| blr3093 [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 258/399 (64%), Positives = 310/399 (77%) Query: 3 TLEGRSVIAAMCVGQLGSLLPHVVVPSILAAFLIPEWHLSGAQAGLLAGSGAAGYMLTVP 62 +L GRS+IA MC+GQ+G+LLPHV + + LA L+P W LS A+ GL+A A GYML VP Sbjct: 37 SLSGRSLIAVMCIGQVGNLLPHVTLSANLAQHLMPAWGLSAAEGGLMASGYAFGYMLAVP 96 Query: 63 VLATLTDRIDARKILIAGSAVSALGTLLFGLFATGLWSGALFNAIAGIGFAGAYMPGLKA 122 VL TLTDRIDAR +L+ GS VS L T FG+FA G WSG ++AG+GFAGAYMPGLKA Sbjct: 97 VLTTLTDRIDARLVLLWGSIVSGLATAAFGMFAQGFWSGTAIWSLAGLGFAGAYMPGLKA 156 Query: 123 LTDRLAPGDSSRAVTLYTSSFSFGVGLSFLVSQLVAEALGWRSAFLVTALGPLMMLSVCF 182 LTDRL GD+SRAVTLYTSSFS GVGLSFLV+QL+A+ GWR+AFLVT GP+ M+ C Sbjct: 157 LTDRLPAGDTSRAVTLYTSSFSVGVGLSFLVAQLIADRWGWRTAFLVTGFGPVAMVGACL 216 Query: 183 LLRPVAPKPAQGRLLDFAPVFRNSNAMGFVLGYGAHCFELYGIRTWLVGFWTFVAVRNSE 242 L+ P P P GRLL+FAPVF N A+G++LGYGAHCFELYGIRTWLVGFWTFV Sbjct: 217 LIDPRRPVPKAGRLLNFAPVFANREALGYILGYGAHCFELYGIRTWLVGFWTFVVAHQGA 276 Query: 243 GSLLTPVVVSVLFSLLAMPASILGNECAIRFGRHRAITAVMLSSACVALLIGAFADKSPW 302 + L+PVV+S F++++MPASILGNE A++FGRHRAIT VM++SACVAL+IG A W Sbjct: 277 PAWLSPVVLSFCFAVISMPASILGNEAALKFGRHRAITIVMIASACVALVIGLNATAPAW 336 Query: 303 LLLPLVLVYAITVPADSGALTSGMTMAADPNYRGATMAVHSTVGFSLSALGAWALGVALD 362 LL L+L+Y +TVPADSGALT+GM+ AA +RGAT+A+HSTVGF LSA+GAW G ALD Sbjct: 337 LLALLLLLYGLTVPADSGALTAGMSAAAASEHRGATLALHSTVGFGLSAVGAWGTGAALD 396 Query: 363 AAGGPSSATAWAAAFAVLAAGILLGPVALYWSRARAPQG 401 AAGGP SAT W AF VLAAGI LGP+AL W+R+ A G Sbjct: 397 AAGGPQSATGWLLAFIVLAAGIALGPLALLWARSGADGG 435 >ref|ZP_00055961.1| COG0477: Permeases of the major facilitator superfamily [Magnetospirillum magnetotacticum MS-1] Length = 399 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/391 (43%), Positives = 238/391 (60%), Gaps = 8/391 (2%) Query: 6 GRSVIAAMCVGQLGSLLPHVVVPSILAAFLIPEWHLSGAQAGLLAGSGAAGYMLTVPVLA 65 G + +C ++ +++ P++L AF + +W LS +AG ++G AGY + VPVL Sbjct: 9 GAKAVFCLCAAEVLTMVGVFAFPALLPAF-VAQWGLSNTEAGWISGILFAGYTVAVPVLT 67 Query: 66 TLTDRIDARKILIAGSAVSALGTLLFGLFATGLWSGALFNAIAGIGFAGAYMPGLKALTD 125 TLTDRIDA+++ + G+ V+AL L + ++A G WS +AG+G AG YMPGLKAL D Sbjct: 68 TLTDRIDAKRVYLLGALVAALSCLAYAVWAQGFWSALALRFLAGVGLAGTYMPGLKALVD 127 Query: 126 RLAPGDSSRAVTLYTSSFSFGVGLSFLVSQLVAEALGWRSAFLVTALGPL----MMLSVC 181 R +R ++ YT+SFS G SF++ VAE GW++AF++ L L ++L+V Sbjct: 128 RTRGPKQARWISFYTASFSLGTSGSFMIIGAVAEVWGWKAAFVLAGLSALAAFVLVLAVL 187 Query: 182 FLLRPVAP-KPAQGRLLDFAPVFRNSNAMGFVLGYGAHCFELYGIRTWLVGFWTFVAVRN 240 PVAP +P DF PVFRN AMG+VLGY AH +EL+G R+W+V F +V Sbjct: 188 ERTEPVAPAQPVNP--FDFGPVFRNRAAMGYVLGYAAHVWELFGARSWMVAFLAWVLASQ 245 Query: 241 SEGSLLTPVVVSVLFSLLAMPASILGNECAIRFGRHRAITAVMLSSACVALLIGAFADKS 300 S +P + L SLLAM AS++G + AIRF R R ML+SA +A +IG Sbjct: 246 PGASGPSPTTTATLASLLAMAASLVGADLAIRFDRRRVCAVAMLASAALAAIIGFLGGLP 305 Query: 301 PWLLLPLVLVYAITVPADSGALTSGMTMAADPNYRGATMAVHSTVGFSLSALGAWALGVA 360 ++ L+L+Y I + DS ALT+G MAA+P RGAT+A+HS +GF +G A G+ Sbjct: 306 YGIVAGLMLLYNILIQIDSAALTTGAVMAAEPERRGATIAIHSLLGFGAGFIGPLAFGMV 365 Query: 361 LDAAGGPSSATAWAAAFAVLAAGILLGPVAL 391 LD AGG SS+ AW AFA LA + LGP+AL Sbjct: 366 LDLAGGGSSSLAWGMAFASLAIVVSLGPLAL 396 >emb|CAM74470.1| major facilitator superfamily [Magnetospirillum gryphiswaldense MSR-1] Length = 399 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 170/395 (43%), Positives = 239/395 (60%), Gaps = 9/395 (2%) Query: 1 MLTLEGRSV--IAAMCVGQLGSLLPHVVVPSILAAFLIPEWHLSGAQAGLLAGSGAAGYM 58 M GR V + +C+ ++ ++ P P++L F I + S +AG L+G AGY Sbjct: 1 MFKYLGRGVGAVRLLCLAEVLTMGPVFAFPALLPDF-ISLFDFSSTEAGWLSGITFAGYA 59 Query: 59 LTVPVLATLTDRIDARKILIAGSAVSALGTLLFGLFATGLWSGALFNAIAGIGFAGAYMP 118 VP L+ LTDR+D R++ +AG+ V+ L LLF + A G W+ +F A+AGIG AG YMP Sbjct: 60 AAVPTLSALTDRLDTRRVYVAGAVVAGLSALLFAVLAEGFWTALVFRALAGIGLAGTYMP 119 Query: 119 GLKALTDRLAPGDSSRAVTLYTSSFSFGVGLSFLVSQLVAEALGWRSAFLVTALGPLMML 178 GLKAL DR D + ++ YT+SFS G G+SFL + L AE LGWR AF + G L+ Sbjct: 120 GLKALVDRTDGPDQPKWMSWYTASFSLGTGISFLTAGLFAEILGWRGAFALLGAGALVAA 179 Query: 179 SVCFLL--RPVAPKPAQGRLLDFAPVFRNSNAMGFVLGYGAHCFELYGIRTWLVGFWTFV 236 ++ L R A KP G+LLD PV N M +VLGY AH +EL+G+R+W+V F F Sbjct: 180 ALVLALDSRIPAAKPI-GKLLDLRPVLANRRVMAYVLGYFAHMWELFGLRSWMVAFLAFA 238 Query: 237 AVRNSEGSLLTPVVVSVLFSLLAMPASILGNECAIRFGRHRAITAVMLSSACVALLIGAF 296 A + + LTP +V+ L S++AM ASI G A+++ R R + ++S A+L+G Sbjct: 239 A---AGPAFLTPTLVAALSSVVAMIASIGGAALALKYDRIRTCSLFAVASGTCAVLVGLS 295 Query: 297 ADKSPWLLLPLVLVYAITVPADSGALTSGMTMAADPNYRGATMAVHSTVGFSLSALGAWA 356 + ++ L+LVY V DS ALT+G +AA+P RGA++AVHS +GF+ + LG A Sbjct: 296 SGWGMAAVVVLMLVYNGVVQLDSAALTTGAVLAAEPERRGASIAVHSLIGFAGAFLGPLA 355 Query: 357 LGVALDAAGGPSSATAWAAAFAVLAAGILLGPVAL 391 G L++AGG SA AWA AFA L A LGP+AL Sbjct: 356 FGWILESAGGAQSALAWALAFASLGAVAALGPLAL 390 >ref|YP_423330.1| major facilitator superfamily permease [Magnetospirillum magneticum AMB-1] dbj|BAE52771.1| Permease of the major facilitator superfamily [Magnetospirillum magneticum AMB-1] Length = 376 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 159/367 (43%), Positives = 223/367 (60%), Gaps = 4/367 (1%) Query: 28 PSILAAFLIPEWHLSGAQAGLLAGSGAAGYMLTVPVLATLTDRIDARKILIAGSAVSALG 87 P++L AF + EW LS +AG ++G AGY L VPVL TLTDR+DA+++ + G+ V+ + Sbjct: 8 PALLPAF-VTEWGLSNTEAGWISGVLFAGYTLAVPVLTTLTDRMDAKRVYLCGALVAGIS 66 Query: 88 TLLFGLFATGLWSGALFNAIAGIGFAGAYMPGLKALTDRLAPGDSSRAVTLYTSSFSFGV 147 LL+ + A G WS +AG+G AG YMPGLKAL DR +R ++ YT+SFS G Sbjct: 67 CLLYAVAAEGFWSALALRFLAGVGLAGTYMPGLKALVDRTRGPKQARWISFYTASFSLGT 126 Query: 148 GLSFLVSQLVAEALGWRSAFLVTALGPLMMLSVCFL-LRPVAP-KPAQG-RLLDFAPVFR 204 SF++ VAE GW+SAF + + L ++ L P PAQ DF PVFR Sbjct: 127 SGSFMIIGAVAELWGWKSAFALAGVAALAAFALVLAQLEKAEPIPPAQPVNPFDFGPVFR 186 Query: 205 NSNAMGFVLGYGAHCFELYGIRTWLVGFWTFVAVRNSEGSLLTPVVVSVLFSLLAMPASI 264 N AMG+VLGY AH +EL+G R+W+V F +V +P + + +LLAM +S+ Sbjct: 187 NRAAMGYVLGYAAHVWELFGARSWMVAFLAWVLASQPGAGGPSPTTAATIGALLAMASSV 246 Query: 265 LGNECAIRFGRHRAITAVMLSSACVALLIGAFADKSPWLLLPLVLVYAITVPADSGALTS 324 +G + AIRF R R M+SSA +A +IG +++ L+L+Y + + DS ALT+ Sbjct: 247 IGADLAIRFDRRRVCALAMVSSALLAAVIGFLGGLPYGIVVGLMLLYNVLIQIDSAALTT 306 Query: 325 GMTMAADPNYRGATMAVHSTVGFSLSALGAWALGVALDAAGGPSSATAWAAAFAVLAAGI 384 G MAA+P RGAT+A+HS +GF +G A G+ LD AGG +S+ AW AFA LA + Sbjct: 307 GAVMAAEPERRGATIAIHSLLGFGAGFVGPLAFGMVLDLAGGGNSSLAWGLAFASLAVVV 366 Query: 385 LLGPVAL 391 LGP+AL Sbjct: 367 GLGPLAL 373 >gb|ACF09909.1| permease [uncultured marine group III euryarchaeote KM3-28-E8] Length = 423 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 161/393 (40%), Positives = 224/393 (56%), Gaps = 8/393 (2%) Query: 8 SVIAAMCVGQLGSLLPHVVVPSILAAFLIPEWHLSGAQAGLLAGSGAAGYMLTVPVLATL 67 ++I MCV ++ + L S+L F W LS + G ++G AGY L VPVL +L Sbjct: 27 ALIVLMCVCEVLTTLDAFAFASMLPHFQT-LWSLSATELGWISGIFFAGYTLAVPVLVSL 85 Query: 68 TDRIDARKILIAGSAVSALGTLLFGLFATGLWSGALFNAIAGIGFAGAYMPGLKALTDRL 127 TDR+DA+ I I G+AV AL + F +FA G W+ + IAG GFAG YMPGL+ L DR Sbjct: 86 TDRVDAKPIYIGGAAVIALSSASFAIFADGFWTALILRFIAGAGFAGTYMPGLRILIDRY 145 Query: 128 APGDSSRAVTLYTSSFSFGVGLSFLVSQLVAEALGWRSAF-LVTALGPLMMLSVCFLLRP 186 + + RA+ YT+ FS GV S+L++ + GW++ F + V LLR Sbjct: 146 SGPNQPRAIAYYTAFFSLGVANSYLMAGSLNALFGWQAVFWATAGAATAAVFMVTILLRG 205 Query: 187 VAPKPAQ--GRLLDFAPVFRNSNAMGFVLGYGAHCFELYGIRTWLVGFWTFVAVRNSEGS 244 P PA+ G LLDF P+ RN MG+VLGY H +EL +R W+VGF F A+ N + Sbjct: 206 KQPVPAETTGSLLDFRPILRNRAVMGYVLGYAVHAWELLALRAWIVGFLVFSAMSNGGSA 265 Query: 245 LLTPVVVSVLFSLLAMPASILGNECAIRFGRHRAITAVMLSSACVALLIGAFADKSP--W 302 L+P + + +LLA+ ASI G E A R+GR R I+ +ML SA A +G F+ P W Sbjct: 266 PLSPTIAAAFGALLAVFASIAGGELANRYGRRRVISFIMLMSAVSACGVG-FSGTLPYGW 324 Query: 303 LLLPLVLVYAITVPADSGALTSGMTMAADPNYRGATMAVHSTVGFSLSALGAWALGVALD 362 +++ L + Y + V +S ALT+G AA P +GAT+AVHS GF+ G G+ALD Sbjct: 325 VIV-LTMFYIVLVQGESAALTTGTVQAAPPGRQGATLAVHSIFGFTGGFFGPLVFGIALD 383 Query: 363 AAGGPSSATAWAAAFAVLAAGILLGPVALYWSR 395 GG + AW AAFA + + GP+ L +R Sbjct: 384 GFGGVGNEVAWGAAFATMGLAVAFGPIFLLLTR 416