BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0224.p         (162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771840.1| hypothetical protein bll5200 [Bradyrhizobium ja...   187   3e-46
ref|YP_579133.1| hypothetical protein Nham_4003 [Nitrobacter ham...   159   9e-38
ref|YP_571681.1| hypothetical protein Nham_4234 [Nitrobacter ham...   156   1e-36
ref|NP_774280.1| hypothetical protein bll7640 [Bradyrhizobium ja...   152   2e-35
ref|YP_002290452.1| hypothetical protein OCAR_7484 [Oligotropha ...   116   1e-24

>ref|NP_771840.1| hypothetical protein bll5200 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50465.1| bll5200 [Bradyrhizobium japonicum USDA 110]
          Length = 160

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 123/158 (77%), Gaps = 3/158 (1%)

Query: 1   MTPVRVSLSSLRESRWTEYLIRFVLGGGVTVLTGLISSTCGAYVGGAFLALPAIFCASAT 60
           M P+R S SSL+E RW EYLIRF LGG  TV  GL+SS  GA +GG FLALPAIFCASAT
Sbjct: 1   MMPIRFSPSSLKEGRWYEYLIRFALGGTATVFAGLVSSRYGASIGGLFLALPAIFCASAT 60

Query: 61  LIEKHEIRRKRNAGLDGTWRGQQAAALDAAGAALGAVGMLAFAIVYALTVDRSVPAAFIA 120
           LIEKHEIRRKR AGL G  RG+ AAA+D+AGAALGA+GMLAFA+V++LT + S+ AAFI 
Sbjct: 61  LIEKHEIRRKREAGLAGERRGRTAAAVDSAGAALGALGMLAFAMVFSLTAETSIAAAFIG 120

Query: 121 ASLAWLICSIAAWYVRREMRSARRTRTPGDG---VIGR 155
           ASLAWL+ S+ AWYVRR+ RS RR RT   G    IGR
Sbjct: 121 ASLAWLVISMVAWYVRRKTRSVRRGRTEQKGGGSAIGR 158


>ref|YP_579133.1| hypothetical protein Nham_4003 [Nitrobacter hamburgensis X14]
 gb|ABE64673.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 144

 Score =  159 bits (403), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 114/140 (81%)

Query: 1   MTPVRVSLSSLRESRWTEYLIRFVLGGGVTVLTGLISSTCGAYVGGAFLALPAIFCASAT 60
           MTPVR+S SSLRE R  EYL+RF LGG  TV+TGL+SS  GA VGG FLALP IFCASAT
Sbjct: 1   MTPVRISFSSLREGRPYEYLVRFALGGAATVVTGLVSSRYGASVGGLFLALPVIFCASAT 60

Query: 61  LIEKHEIRRKRNAGLDGTWRGQQAAALDAAGAALGAVGMLAFAIVYALTVDRSVPAAFIA 120
           LIEKHEIRRK   GLDG  RGQ+AAALDAAGAALGA+GMLAFA+V+ + V  SV  AF+A
Sbjct: 61  LIEKHEIRRKNEEGLDGRRRGQEAAALDAAGAALGALGMLAFALVFCIVVKASVFVAFVA 120

Query: 121 ASLAWLICSIAAWYVRREMR 140
           AS+AWL+ ++AAWY RR+ +
Sbjct: 121 ASIAWLVVAMAAWYARRKTK 140


>ref|YP_571681.1| hypothetical protein Nham_4234 [Nitrobacter hamburgensis X14]
 gb|ABE64849.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 144

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 116/140 (82%)

Query: 1   MTPVRVSLSSLRESRWTEYLIRFVLGGGVTVLTGLISSTCGAYVGGAFLALPAIFCASAT 60
           MTP+R+S SSLRE R  EYL+RF LGG  TV+TGLISS  GA +GG FLALPAIFCASAT
Sbjct: 1   MTPIRISFSSLREGRPYEYLVRFALGGAATVVTGLISSDYGASIGGLFLALPAIFCASAT 60

Query: 61  LIEKHEIRRKRNAGLDGTWRGQQAAALDAAGAALGAVGMLAFAIVYALTVDRSVPAAFIA 120
           LIEKHEIRRK+  GL+G  RGQQAAALDAAGAALGA+GMLAFA+V+ + V  S+ AAF+ 
Sbjct: 61  LIEKHEIRRKKETGLNGCRRGQQAAALDAAGAALGALGMLAFALVFFIVVKASISAAFVT 120

Query: 121 ASLAWLICSIAAWYVRREMR 140
           AS+AWL+ S+AAWY RR+ R
Sbjct: 121 ASIAWLVVSMAAWYARRKTR 140


>ref|NP_774280.1| hypothetical protein bll7640 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52905.1| bll7640 [Bradyrhizobium japonicum USDA 110]
          Length = 154

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 114/140 (81%)

Query: 4   VRVSLSSLRESRWTEYLIRFVLGGGVTVLTGLISSTCGAYVGGAFLALPAIFCASATLIE 63
           ++VS SSLRE  W EYL+RF LGG  T  TGLISS  GA +GG FLALPAIFCASATLIE
Sbjct: 1   MKVSPSSLREGWWYEYLVRFGLGGAATAFTGLISSRYGASIGGLFLALPAIFCASATLIE 60

Query: 64  KHEIRRKRNAGLDGTWRGQQAAALDAAGAALGAVGMLAFAIVYALTVDRSVPAAFIAASL 123
           KHE+RRKR AGL+G  RG++AAALDAAGAALGA+GMLAFA V+   V+RSV  AFI ASL
Sbjct: 61  KHELRRKREAGLEGRRRGREAAALDAAGAALGALGMLAFAAVFWFLVERSVAGAFIGASL 120

Query: 124 AWLICSIAAWYVRREMRSAR 143
           AWL  ++AAW+VRR++R AR
Sbjct: 121 AWLTVAVAAWFVRRQVRLAR 140


>ref|YP_002290452.1| hypothetical protein OCAR_7484 [Oligotropha carboxidovorans OM5]
 ref|YP_004631614.1| hypothetical protein OCA5_c06500 [Oligotropha carboxidovorans OM5]
 gb|ACI94587.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI01798.1| hypothetical protein OCA4_c06490 [Oligotropha carboxidovorans OM4]
 gb|AEI05373.1| hypothetical protein OCA5_c06500 [Oligotropha carboxidovorans OM5]
          Length = 149

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 101/131 (77%)

Query: 6   VSLSSLRESRWTEYLIRFVLGGGVTVLTGLISSTCGAYVGGAFLALPAIFCASATLIEKH 65
           +S S L  SRW EY+IRFVLGG VTV TG+ISS  GA +GG FLALPAIFCASATLIE+H
Sbjct: 5   LSTSPLANSRWYEYVIRFVLGGAVTVFTGMISSEFGASIGGLFLALPAIFCASATLIERH 64

Query: 66  EIRRKRNAGLDGTWRGQQAAALDAAGAALGAVGMLAFAIVYALTVDRSVPAAFIAASLAW 125
           EIRRKR+AG +G  RG+ AAALDA GAALG+V M+AFAIV  +T      AAF  ASLAW
Sbjct: 65  EIRRKRDAGGEGARRGRGAAALDATGAALGSVAMVAFAIVLLVTTSWGAAAAFACASLAW 124

Query: 126 LICSIAAWYVR 136
           ++ ++A W +R
Sbjct: 125 VVIAVAMWVLR 135