BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0215.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizo... 531 e-149 ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhiz... 516 e-144 ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas pal... 513 e-143 ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburge... 509 e-142 ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb... 505 e-141 >ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] sp|Q89XW5.1|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 269/316 (85%), Positives = 285/316 (90%), Gaps = 2/316 (0%) Query: 13 AKSSDAKLTALFLDMLAAEQGAGANTLDAYRRDLTDFSDYLAHAGADFTSADTESLRGYL 72 AK SDAKLT LFLDMLAAEQGAG NTLDAYRRDLTDFS++L G F A+T++LR YL Sbjct: 3 AKPSDAKLTGLFLDMLAAEQGAGPNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYL 62 Query: 73 ADLDTRGFKSTSVARRLSAMRHLYRFLLNERVRTDDPAAILSGPKRGRGLPKVLSIADVD 132 ADLDTRGFKSTSVARRLSAMRHLYRFLLNER+R DDPAAILSGPKRGRGLPKVLSIADVD Sbjct: 63 ADLDTRGFKSTSVARRLSAMRHLYRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVD 122 Query: 133 RMLTRAKELTQT-DVSPAQRLRALRLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVV 191 RML RA+EL++ D SP++RLRALRLYCLLEVLYATGLRVSELV+LP +AA+RDARMIVV Sbjct: 123 RMLRRARELSEAEDASPSKRLRALRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVV 182 Query: 192 RGKGNKERLVPLNDASRQAMADYLAALEVMQPKAKKA-AQSKWLFPSSGESGHLTRQHFA 250 RGKGNKERLVPLN+ASRQAMADYLAA E + K A SKWLFPS GESGHLTRQHFA Sbjct: 183 RGKGNKERLVPLNEASRQAMADYLAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFA 242 Query: 251 RDLKELAGASGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310 RDLKELA ASGL RLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE Sbjct: 243 RDLKELAVASGLQARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 302 Query: 311 ERLKSLVRDLHPLAEK 326 ERLKSLVRDLHPLAEK Sbjct: 303 ERLKSLVRDLHPLAEK 318 >ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/306 (84%), Positives = 280/306 (91%), Gaps = 2/306 (0%) Query: 22 ALFLDMLAAEQGAGANTLDAYRRDLTDFSDYLAHAGADFTSADTESLRGYLADLDTRGFK 81 +LFLDM+AAEQGAG NTLDAYRRDL+D S++LA FT+ADT++LR YLADLDTRGFK Sbjct: 2 SLFLDMMAAEQGAGQNTLDAYRRDLSDLSEFLAGKANSFTTADTQALRDYLADLDTRGFK 61 Query: 82 STSVARRLSAMRHLYRFLLNERVRTDDPAAILSGPKRGRGLPKVLSIADVDRMLTRAKEL 141 S+SVARRLSAMRHL+RFLL+E +R+DDPAAILSGPKRGR LPKVLSI DVDRMLTRAKEL Sbjct: 62 SSSVARRLSAMRHLFRFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTRAKEL 121 Query: 142 TQT-DVSPAQRLRALRLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRGKGNKERL 200 T+T D SPAQRLRALRLYCLLEVLYATGLRVSELV+LP +AAR DARMIVVRGKGNKERL Sbjct: 122 TETADASPAQRLRALRLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGNKERL 181 Query: 201 VPLNDASRQAMADYLAALEVMQPKAKKAAQ-SKWLFPSSGESGHLTRQHFARDLKELAGA 259 VPLN ASRQAMADYLAAL+ ++P+ K +A KWLFPS GESGHLTRQHFARDLKELA A Sbjct: 182 VPLNQASRQAMADYLAALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKELAVA 241 Query: 260 SGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRD 319 SGL RLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRD Sbjct: 242 SGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRD 301 Query: 320 LHPLAE 325 LHPLAE Sbjct: 302 LHPLAE 307 >ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 258/316 (81%), Positives = 283/316 (89%), Gaps = 2/316 (0%) Query: 13 AKSSDAKLTALFLDMLAAEQGAGANTLDAYRRDLTDFSDYLAHAGADFTSADTESLRGYL 72 K+SDA+L LFLDM+AAEQGAG NTLDAYR DLTD SD+L HA + F +ADTE LRGYL Sbjct: 4 GKNSDARLIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADTEVLRGYL 63 Query: 73 ADLDTRGFKSTSVARRLSAMRHLYRFLLNERVRTDDPAAILSGPKRGRGLPKVLSIADVD 132 A+LD RG+KSTSVAR+LSA RHL+RFLL ER+R DDPAAILSGPKRGRGLPKVLSIADVD Sbjct: 64 AELDERGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVD 123 Query: 133 RMLTRAKELTQT-DVSPAQRLRALRLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVV 191 R+L AK+L + QRLRA RLYCLLEVLYATGLRVSELVSLP+SAARRDARMIVV Sbjct: 124 RLLQHAKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVV 183 Query: 192 RGKGNKERLVPLNDASRQAMADYLAAL-EVMQPKAKKAAQSKWLFPSSGESGHLTRQHFA 250 RGKGNKERLVPLN++S+QAMA YLAAL E+ Q KAK A+ SKWLFPS GESGHLTRQHFA Sbjct: 184 RGKGNKERLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFA 243 Query: 251 RDLKELAGASGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310 R+LK+LAGA+GL+PRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE Sbjct: 244 RELKDLAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 303 Query: 311 ERLKSLVRDLHPLAEK 326 ERLKSLVRDLHPLA+K Sbjct: 304 ERLKSLVRDLHPLADK 319 >ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 259/314 (82%), Positives = 278/314 (88%), Gaps = 2/314 (0%) Query: 14 KSSDAKLTALFLDMLAAEQGAGANTLDAYRRDLTDFSDYLAHAGADFTSADTESLRGYLA 73 K+SDAKLT LFLDMLAAEQGAG NTLDAYRRDL D S +L G F +A T++LR YL Sbjct: 5 KTSDAKLTNLFLDMLAAEQGAGDNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLG 64 Query: 74 DLDTRGFKSTSVARRLSAMRHLYRFLLNERVRTDDPAAILSGPKRGRGLPKVLSIADVDR 133 DLD RGFKS+SVARRLSAMRHL+RFLL+ER+R+DDPAAILSGPKRGR LPKVLSIADVDR Sbjct: 65 DLDVRGFKSSSVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDR 124 Query: 134 MLTRAKELTQT-DVSPAQRLRALRLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVR 192 +L AK +T D SPA+RLRA RLYCLLEVLYATGLRVSELVSLP+SAARRDARMIVVR Sbjct: 125 LLACAKAAMETPDASPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVR 184 Query: 193 GKGNKERLVPLNDASRQAMADYLAALEVMQPKAKK-AAQSKWLFPSSGESGHLTRQHFAR 251 GKGNKERLVPLN+ASRQAMADYLAA+ + K A Q KWLFPS GESGHLTRQHFAR Sbjct: 185 GKGNKERLVPLNEASRQAMADYLAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFAR 244 Query: 252 DLKELAGASGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE 311 +LKELA A+GLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE Sbjct: 245 ELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE 304 Query: 312 RLKSLVRDLHPLAE 325 RLKSLVRDLHPLAE Sbjct: 305 RLKSLVRDLHPLAE 318 >ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/314 (81%), Positives = 279/314 (88%), Gaps = 2/314 (0%) Query: 14 KSSDAKLTALFLDMLAAEQGAGANTLDAYRRDLTDFSDYLAHAGADFTSADTESLRGYLA 73 K SD KL ALFLDMLAAEQGAG NTLDAYRRDL D S +LA A F ADT++LR YL Sbjct: 26 KVSDTKLAALFLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRSFVIADTQTLRDYLN 85 Query: 74 DLDTRGFKSTSVARRLSAMRHLYRFLLNERVRTDDPAAILSGPKRGRGLPKVLSIADVDR 133 DLD RGFKS+SVARRLSAMRHL+RFLL+ERVR+DDPAAILSGPKRGR LPK+LSIADVDR Sbjct: 86 DLDLRGFKSSSVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKILSIADVDR 145 Query: 134 MLTRAKELTQT-DVSPAQRLRALRLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVR 192 +L RAK ++ D+SPA+RLRA RLYCLLEVLYATGLRVSELVSLP+SAARRDARMIVVR Sbjct: 146 LLARAKADAESPDISPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVR 205 Query: 193 GKGNKERLVPLNDASRQAMADYLAALEVMQPKAKKAA-QSKWLFPSSGESGHLTRQHFAR 251 GKG KERLVPLNDASRQAMA+YL A++ + K AA + KWLFPS G+SGHLTRQHFAR Sbjct: 206 GKGGKERLVPLNDASRQAMANYLVAIDDQRGAGKTAATRPKWLFPSFGDSGHLTRQHFAR 265 Query: 252 DLKELAGASGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE 311 +LKELA A+GLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE Sbjct: 266 ELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEE 325 Query: 312 RLKSLVRDLHPLAE 325 RLKSLVRDLHPLAE Sbjct: 326 RLKSLVRDLHPLAE 339