BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0213.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|Q89XW7.2|AROK_BRAJA RecName: Full=Shikimate kinase; Short=SK 289 2e-76 ref|NP_766828.1| shikimate kinase [Bradyrhizobium japonicum USDA... 287 5e-76 ref|YP_567433.1| shikimate kinase [Rhodopseudomonas palustris Bi... 287 8e-76 ref|YP_530426.1| shikimate kinase [Rhodopseudomonas palustris Bi... 280 7e-74 ref|YP_001989540.1| shikimate kinase [Rhodopseudomonas palustris... 276 1e-72 >sp|Q89XW7.2|AROK_BRAJA RecName: Full=Shikimate kinase; Short=SK Length = 207 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 158/204 (77%), Positives = 173/204 (84%), Gaps = 3/204 (1%) Query: 1 MSDAAVPAPTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIE 60 MSDAA+P P EADI +ALG RSIVLVGMMG GKSTIGRR+AARLKLPF DADTEIE Sbjct: 1 MSDAALPIQASP--EADILSALGARSIVLVGMMGVGKSTIGRRMAARLKLPFVDADTEIE 58 Query: 61 AAADMTIPEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAIS 120 AAA MTIPEIFE GE +FRDGEARVIAR+L GPVVLATGGGAFMREETR RI +A+S Sbjct: 59 AAAGMTIPEIFERHGEGHFRDGEARVIARLLDGGPVVLATGGGAFMREETRARIAAKAVS 118 Query: 121 IWLKADSDIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRI 180 IWLKAD D+IMRRVRRRADRPLL T DPE TV RLL+EREPVY ADLTIASRDVPHD+I Sbjct: 119 IWLKADHDVIMRRVRRRADRPLLQTADPEGTVTRLLTEREPVYSHADLTIASRDVPHDKI 178 Query: 181 VDECLEALHAHLCGARPADEPPSD 204 V+EC+E L AHLCG + A +PP+D Sbjct: 179 VEECIETLRAHLCGEQAA-QPPAD 201 >ref|NP_766828.1| shikimate kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC45453.1| bll0188 [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 158/204 (77%), Positives = 173/204 (84%), Gaps = 3/204 (1%) Query: 1 MSDAAVPAPTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIE 60 MSDAA+P P EADI +ALG RSIVLVGMMG GKSTIGRR+AARLKLPF DADTEIE Sbjct: 38 MSDAALPIQASP--EADILSALGARSIVLVGMMGVGKSTIGRRMAARLKLPFVDADTEIE 95 Query: 61 AAADMTIPEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAIS 120 AAA MTIPEIFE GE +FRDGEARVIAR+L GPVVLATGGGAFMREETR RI +A+S Sbjct: 96 AAAGMTIPEIFERHGEGHFRDGEARVIARLLDGGPVVLATGGGAFMREETRARIAAKAVS 155 Query: 121 IWLKADSDIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRI 180 IWLKAD D+IMRRVRRRADRPLL T DPE TV RLL+EREPVY ADLTIASRDVPHD+I Sbjct: 156 IWLKADHDVIMRRVRRRADRPLLQTADPEGTVTRLLTEREPVYSHADLTIASRDVPHDKI 215 Query: 181 VDECLEALHAHLCGARPADEPPSD 204 V+EC+E L AHLCG + A +PP+D Sbjct: 216 VEECIETLRAHLCGEQAA-QPPAD 238 >ref|YP_567433.1| shikimate kinase [Rhodopseudomonas palustris BisB5] gb|ABE37532.1| shikimate kinase [Rhodopseudomonas palustris BisB5] Length = 204 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 139/195 (71%), Positives = 168/195 (86%) Query: 1 MSDAAVPAPTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIE 60 MS+ A PA + EA+I AALG R++VL+GMMGAGKST+GRR+A RL LPF DADTEIE Sbjct: 1 MSEIAPPADAARSQEAEIVAALGERAVVLIGMMGAGKSTVGRRLALRLGLPFLDADTEIE 60 Query: 61 AAADMTIPEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAIS 120 +AA MTIPEIF++ GEP+FRDGEARVIAR+L G VLATGGGAFMREETR+RIRD+A+S Sbjct: 61 SAAAMTIPEIFDTHGEPHFRDGEARVIARLLDGGAKVLATGGGAFMREETRDRIRDKAVS 120 Query: 121 IWLKADSDIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRI 180 +WL+AD+D+I+RRV+RRADRPLL TPDP T+ RL+ ER PVYR+ADLTIASRDVPH++I Sbjct: 121 LWLEADADVILRRVKRRADRPLLKTPDPAGTIARLIDERYPVYRSADLTIASRDVPHEKI 180 Query: 181 VDECLEALHAHLCGA 195 VDEC+ ALH +LC A Sbjct: 181 VDECVAALHGYLCCA 195 >ref|YP_530426.1| shikimate kinase [Rhodopseudomonas palustris BisB18] gb|ABD86107.1| shikimate kinase [Rhodopseudomonas palustris BisB18] Length = 206 Score = 280 bits (717), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 137/193 (70%), Positives = 163/193 (84%) Query: 1 MSDAAVPAPTHPTLEADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIE 60 MS+ A EA+I AALG R IVLVGMMGAGKST+GRR+A RL LPF DADTEIE Sbjct: 1 MSETVSSASPLTAAEAEIVAALGRRPIVLVGMMGAGKSTVGRRLATRLHLPFVDADTEIE 60 Query: 61 AAADMTIPEIFESKGEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAIS 120 AAA MTI EIF + GEPYFRDGEARVIAR+L NGP VLATGGGAFMR++TR RI +A+S Sbjct: 61 AAAGMTIAEIFANHGEPYFRDGEARVIARLLDNGPHVLATGGGAFMRDDTRLRIAAQAVS 120 Query: 121 IWLKADSDIIMRRVRRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRI 180 +WL A++D+I+RR++RRADRPLL T DP AT++RL++ER PVY++ADLTIASRDVPH++I Sbjct: 121 LWLHAEADVILRRIKRRADRPLLKTADPAATIDRLIAERYPVYQSADLTIASRDVPHEKI 180 Query: 181 VDECLEALHAHLC 193 VDEC+EALHAHLC Sbjct: 181 VDECVEALHAHLC 193 >ref|YP_001989540.1| shikimate kinase [Rhodopseudomonas palustris TIE-1] gb|ACE99064.1| Shikimate kinase [Rhodopseudomonas palustris TIE-1] Length = 200 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/183 (72%), Positives = 161/183 (87%) Query: 15 EADIAAALGTRSIVLVGMMGAGKSTIGRRVAARLKLPFTDADTEIEAAADMTIPEIFESK 74 EA+I AALG R +VL+GMMGAGKST+GRR+A RL LPF DADTEIE+AA MTIPEIFE+ Sbjct: 16 EAEIVAALGDRPVVLIGMMGAGKSTVGRRLALRLGLPFLDADTEIESAAAMTIPEIFETH 75 Query: 75 GEPYFRDGEARVIARILGNGPVVLATGGGAFMREETRNRIRDRAISIWLKADSDIIMRRV 134 GEP+FRDGEARVI+R+L G VLATGGGAFMREETR+RIR++AIS+WL+A++D+I+RRV Sbjct: 76 GEPHFRDGEARVISRLLDGGTKVLATGGGAFMREETRDRIREKAISMWLEAEADVILRRV 135 Query: 135 RRRADRPLLHTPDPEATVNRLLSEREPVYRTADLTIASRDVPHDRIVDECLEALHAHLCG 194 +RRADRPLL TPDP T+ RL++ER P+YR AD+TIASRDVPH++IVDEC+ ALH +LC Sbjct: 136 KRRADRPLLKTPDPAGTIARLIAERYPLYREADITIASRDVPHEKIVDECVAALHDYLCA 195 Query: 195 ARP 197 A P Sbjct: 196 APP 198