BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0206.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766822.1| citrate synthase [Bradyrhizobium japonicum USDA... 709 0.0 ref|YP_001202790.1| putative citrate synthase [Bradyrhizobium sp... 694 0.0 ref|YP_001243320.1| putative citrate synthase [Bradyrhizobium sp... 677 0.0 ref|YP_001412136.1| citrate synthase [Parvibaculum lavamentivora... 298 1e-78 ref|ZP_07658673.1| citrate synthase [Roseibium sp. TrichSKD4] >g... 257 3e-66 >ref|NP_766822.1| citrate synthase [Bradyrhizobium japonicum USDA 110] dbj|BAC45447.1| citrate synthase [Bradyrhizobium japonicum USDA 110] Length = 405 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/400 (88%), Positives = 373/400 (93%) Query: 1 MKKSAELYLSAREAAAELAVSPATLYAYVSRGLIRSEPSPDSRSHRYRAEDIRGLKERRV 60 MK S ELYLSAREAAAELA+SPATLYAYVSRGLIRSEP+PDSR +RYRAED+R LKERRV Sbjct: 1 MKNSDELYLSAREAAAELAISPATLYAYVSRGLIRSEPTPDSRKNRYRAEDVRALKERRV 60 Query: 61 PSPEPRGFRNFDADLPVMDSAIATITEQGPIYRGVNCVELAERDTLEHTATLLWDVTGVD 120 PSPEPRG R+FDADLPVMD+ I+TITE+G IYRGVNCV+LAE DTLEHTATLLWDV+GVD Sbjct: 61 PSPEPRGLRSFDADLPVMDTEISTITEEGAIYRGVNCVDLAENDTLEHTATLLWDVSGVD 120 Query: 121 PFAPDNCPQISDEMRAIAEAARRAQPIDRTVAVLALAASADPGAFTRAPDGRAMVGGRIL 180 PFAPDN P+IS+EMR IA AARRA PIDR +AVLALAASADP AFTRAPDGRAMVG RI+ Sbjct: 121 PFAPDNQPEISEEMRTIAGAARRAAPIDRAIAVLALAASADPRAFTRAPDGRAMVGARIV 180 Query: 181 RLLVATMLNAAPSNELLHEQVARVWTPDNKHAPDLIRRALVLLADHELNASTFTARCAAS 240 RLLVATMLNA S E LH+QVARVW DNKHAPDLIRRALVLLADHELNASTFTARCAAS Sbjct: 181 RLLVATMLNAEASAEPLHQQVARVWAADNKHAPDLIRRALVLLADHELNASTFTARCAAS 240 Query: 241 TGLNLYDAVIAGLVALKGPMHGGAGVLASRLVKTMLDNDVAPVVRERVALGERFAGFGHG 300 TGLNLYDAVIAGL ALKGP HGGAGVLAS+LVKT++D DVAPVVRERVALGERFAGFGHG Sbjct: 241 TGLNLYDAVIAGLAALKGPKHGGAGVLASQLVKTLVDRDVAPVVRERVALGERFAGFGHG 300 Query: 301 VYKKGDPRAISLLEALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHALRMPAGS 360 VYK+GDPRA SLL AL+RAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHALR+PAGS Sbjct: 301 VYKRGDPRAQSLLNALSRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHALRLPAGS 360 Query: 361 ELALFAMARSVGWIAHASEQLQHGKLIRPRARYVGPAPGR 400 ELALFAMARSVGWIAHASEQLQ GKLIRPRARYVGPAPGR Sbjct: 361 ELALFAMARSVGWIAHASEQLQFGKLIRPRARYVGPAPGR 400 >ref|YP_001202790.1| putative citrate synthase [Bradyrhizobium sp. ORS 278] emb|CAL74550.1| Putative citrate synthase [Bradyrhizobium sp. ORS 278] Length = 413 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/407 (82%), Positives = 370/407 (90%) Query: 1 MKKSAELYLSAREAAAELAVSPATLYAYVSRGLIRSEPSPDSRSHRYRAEDIRGLKERRV 60 MKK + LYLSAREA+AELA++PATLYAYVSRGL+RSEPSPDSRS+RYRAEDIR LKERR Sbjct: 7 MKKDSGLYLSAREASAELAITPATLYAYVSRGLVRSEPSPDSRSNRYRAEDIRALKERRA 66 Query: 61 PSPEPRGFRNFDADLPVMDSAIATITEQGPIYRGVNCVELAERDTLEHTATLLWDVTGVD 120 P+PEPR FR+FDADLPV DSA++TITE GPIYRGVNCVELAERD+LEH ATLLWDVT +D Sbjct: 67 PAPEPRAFRSFDADLPVFDSAVSTITEAGPIYRGVNCVELAERDSLEHAATLLWDVTALD 126 Query: 121 PFAPDNCPQISDEMRAIAEAARRAQPIDRTVAVLALAASADPGAFTRAPDGRAMVGGRIL 180 PFAP+N P ISD+MR IAEAARRA PIDR +AVLALA +ADP AF RAPDGRA++G RI+ Sbjct: 127 PFAPENMPHISDDMRLIAEAARRAAPIDRAIAVLALATNADPAAFNRAPDGRALIGARIV 186 Query: 181 RLLVATMLNAAPSNELLHEQVARVWTPDNKHAPDLIRRALVLLADHELNASTFTARCAAS 240 RL+VATMLNA PS E LH Q+A+ W PDNKHAPDLIRR LVLLADHELNASTFT RCAAS Sbjct: 187 RLVVATMLNAPPSAEALHVQIAKTWAPDNKHAPDLIRRTLVLLADHELNASTFTVRCAAS 246 Query: 241 TGLNLYDAVIAGLVALKGPMHGGAGVLASRLVKTMLDNDVAPVVRERVALGERFAGFGHG 300 TGL+LYDAVIAGL ALKGP HGGAGVLAS+LVKT++D DVAP++RERVALGERFAGFGHG Sbjct: 247 TGLSLYDAVIAGLAALKGPQHGGAGVLASQLVKTLIDRDVAPLIRERVALGERFAGFGHG 306 Query: 301 VYKKGDPRAISLLEALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHALRMPAGS 360 VYK+GDPRAISLLEALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVH+LR+PAGS Sbjct: 307 VYKRGDPRAISLLEALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHSLRLPAGS 366 Query: 361 ELALFAMARSVGWIAHASEQLQHGKLIRPRARYVGPAPGRAGTTNSI 407 ELALFAMAR VGWIAHA EQLQ G+LIRPRARY GP PGRA + ++ Sbjct: 367 ELALFAMARCVGWIAHACEQLQFGRLIRPRARYTGPIPGRAASLETL 413 >ref|YP_001243320.1| putative citrate synthase [Bradyrhizobium sp. BTAi1] gb|ABQ39414.1| Putative citrate synthase [Bradyrhizobium sp. BTAi1] Length = 407 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/407 (81%), Positives = 364/407 (89%) Query: 1 MKKSAELYLSAREAAAELAVSPATLYAYVSRGLIRSEPSPDSRSHRYRAEDIRGLKERRV 60 MKK + LYLSAREA+AELA+SPATLYAYVSRGL+RSEPS DSRSHRYRAEDIR LKERR Sbjct: 1 MKKDSGLYLSAREASAELAISPATLYAYVSRGLVRSEPSLDSRSHRYRAEDIRALKERRA 60 Query: 61 PSPEPRGFRNFDADLPVMDSAIATITEQGPIYRGVNCVELAERDTLEHTATLLWDVTGVD 120 P+PEPR FR+FDADLPV DSA++TITE GPIYRGVNCV+LAERD+LEH ATLLWD+T +D Sbjct: 61 PAPEPRVFRSFDADLPVFDSAVSTITEAGPIYRGVNCVDLAERDSLEHAATLLWDITAID 120 Query: 121 PFAPDNCPQISDEMRAIAEAARRAQPIDRTVAVLALAASADPGAFTRAPDGRAMVGGRIL 180 PFAPDN P IS EMR IAEAARRA PIDR +AVLALA ADP AF RAPDGRA+VG RIL Sbjct: 121 PFAPDNMPHISGEMRLIAEAARRAAPIDRAIAVLALATQADPAAFNRAPDGRALVGARIL 180 Query: 181 RLLVATMLNAAPSNELLHEQVARVWTPDNKHAPDLIRRALVLLADHELNASTFTARCAAS 240 RL+VA ML+AAPS E LH QVA+ W ++KHAPDLIRR LVLLADHELNASTFT RCAAS Sbjct: 181 RLVVAAMLDAAPSAEPLHIQVAKAWAAEHKHAPDLIRRTLVLLADHELNASTFTVRCAAS 240 Query: 241 TGLNLYDAVIAGLVALKGPMHGGAGVLASRLVKTMLDNDVAPVVRERVALGERFAGFGHG 300 TGL+LYDAVIAGL ALKGP HGGAGVLAS+LVKT++D DVAP++RERVALGERFAGFGHG Sbjct: 241 TGLSLYDAVIAGLAALKGPQHGGAGVLASQLVKTLIDRDVAPLIRERVALGERFAGFGHG 300 Query: 301 VYKKGDPRAISLLEALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHALRMPAGS 360 VYK+GDPRAI+LL+ALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVH+LR+PAGS Sbjct: 301 VYKRGDPRAIALLDALTRAGAPRKFTREVPERIAEATGEFVNIDYALAVLVHSLRLPAGS 360 Query: 361 ELALFAMARSVGWIAHASEQLQHGKLIRPRARYVGPAPGRAGTTNSI 407 ELALFAMAR VGWIAHA EQLQ G+LIRPRARY GP PGR + + Sbjct: 361 ELALFAMARCVGWIAHACEQLQFGRLIRPRARYTGPVPGRGAILDPL 407 >ref|YP_001412136.1| citrate synthase [Parvibaculum lavamentivorans DS-1] gb|ABS62479.1| Citrate synthase [Parvibaculum lavamentivorans DS-1] Length = 406 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/401 (44%), Positives = 233/401 (58%), Gaps = 12/401 (2%) Query: 7 LYLSAREAAAELAVSPATLYAYVSRGLIRSEPSPDSRSHRYRAEDIRGLKERR-VPSPEP 65 LYL+AREAAAEL +S ATLYAYVSR +IRSEP PDSR+ RYRAED+R LK RR P+ Sbjct: 8 LYLTAREAAAELGISLATLYAYVSRDMIRSEPMPDSRAKRYRAEDVRALKRRRSAEKPDA 67 Query: 66 R-GFRNFDADLPVMDSAIATITEQGPIYRGVNCVELAERDTLEHTATLLWDVTGVDPFAP 124 G LPV+DSAI I + YRG + LA+ LE A L+W V PF Sbjct: 68 TAGSGTLSFGLPVLDSAITLIADGRLHYRGSDATALAKSSNLEQVAALIWGCRDVQPFTK 127 Query: 125 DNCPQISDEMRAIAEAARRAQPIDRTVAVLALAASADPGAFTRAPDGRAMVGGRILRLLV 184 + S+ ++ +A R I+R +++L LAA D + G A G R+LR + Sbjct: 128 EAVLAPSERLKGLAAELARTSRIERCLSLLPLAALEDATVYNMTDRGLATTGARLLRYVA 187 Query: 185 ATMLNAAPSNELLHEQVARVWTPDNKHAPDLIRRALVLLADHELNASTFTARCAASTGLN 244 A + APS++ +HE + R T K A +LIR ALVL ADHELNAS FT RC A TG Sbjct: 188 AVIAGEAPSDKPVHEVLTRALTQGEKPASELIRAALVLSADHELNASAFTVRCVAGTGAT 247 Query: 245 LYDAVIAGLVALKGPMHGGAGVLASRLVKTMLD----NDVAPVVRERVALGERFAGFGHG 300 LY AV AG+ A +GP HGG L+ R+ +LD DV V +R+ + GFGH Sbjct: 248 LYAAVQAGICAAQGPRHGG---LSGRVESLLLDMSNRQDVEDAVLQRLKDNDPVPGFGHP 304 Query: 301 VYKKGDPRAISLLEALT-RAGAPRKFTR--EVPERIAEATGEFVNIDYALAVLVHALRMP 357 +Y GDPRA +LL + + G F R + + EA G NID+A+A + L +P Sbjct: 305 LYPDGDPRAAALLSMVAEKYGDDANFLRAQRIFRVMEEAGGLKPNIDFAIATVGAVLHLP 364 Query: 358 AGSELALFAMARSVGWIAHASEQLQHGKLIRPRARYVGPAP 398 G+ L++F + R+ GWI HA EQ + G +IRPRARY G AP Sbjct: 365 RGAGLSIFVLGRTAGWIGHAIEQYRTGLMIRPRARYTGEAP 405 >ref|ZP_07658673.1| citrate synthase [Roseibium sp. TrichSKD4] gb|EFO32176.1| citrate synthase [Roseibium sp. TrichSKD4] Length = 391 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 166/400 (41%), Positives = 216/400 (54%), Gaps = 22/400 (5%) Query: 7 LYLSAREAAAELAVSPATLYAYVSRGLIRSEPSPDSRSHRYRAEDIRGLKERRVPSPEPR 66 +YLSAREAAAEL V PATLYAYVSRGLIRS P P + RY AED+R ++ P Sbjct: 5 VYLSAREAAAELGVQPATLYAYVSRGLIRSVPGP-GKQKRYDAEDVRRFLAQKAEEPVGE 63 Query: 67 GFRNFDADLPVMDSAIATITEQ-GPIYRGVNCVELAERDTLEHTATLLWDVTGVDPF--- 122 G + PV+ + + I+++ GPIYRG + LA +LE ATLLW DPF Sbjct: 64 GGKGLSGA-PVLSTRLTMISDEVGPIYRGQSATVLARSSSLEAVATLLWGCES-DPFHEA 121 Query: 123 APDNCPQISDEMRAIAEAARRAQPIDRTVAVLALAASADPGAFTRAPDGRAMVGGRILRL 182 AP+ P + + + P+ R LA D A+T +P+ + G +LR Sbjct: 122 APEAAPNLPEGL----------DPLSRLTMALAAWPLLDRAAYTLSPNLLSKKGAALLRY 171 Query: 183 LVATMLNAAPSNELLHEQVARVWTPDNKHAPDLIRRALVLLADHELNASTFTARCAASTG 242 A +L A SN +H Q+A W ++R AL+L ADHELN S FT RCAAST Sbjct: 172 GTAVLLGQAASNMPIHSQIANAWGVSGPKT-AILRAALILSADHELNTSAFTVRCAASTR 230 Query: 243 LNLYDAVIAGLVALKGPMHGGAGVLASRLVKTMLD-NDVAPVVRERVALGERFAGFGHGV 301 L+ A+I+GL A GP HG + + ++ +DV PV+ R+A GE G GHGV Sbjct: 231 APLHAALISGLGAFSGPRHGASPDRVVAWISSLQSRDDVEPVLSARLARGEPLPGIGHGV 290 Query: 302 YKKGDPRAISLLEALTRAGAPRKFTREVPERIAEAT---GEFVNIDYALAVLVHALRMPA 358 YK DPRA LL L A F +P+ I A G+ N+D+ALA + AL +P Sbjct: 291 YKHRDPRADCLLAVLQENAAETPFVVMLPKVIEVAESLYGDPPNVDFALAAVQQALELPE 350 Query: 359 GSELALFAMARSVGWIAHASEQLQHGKLIRPRARYVGPAP 398 + LF + R VGWIAHA EQ IRPRA Y+G P Sbjct: 351 HAAKTLFCIGRMVGWIAHALEQYAAPDKIRPRATYIGERP 390