BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0201.p         (204 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris B...   370   e-101
ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris B...   369   e-100
ref|YP_001236331.1| putative 3'-5' exonuclease family protein [B...   369   e-100
ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustri...   366   1e-99
ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium ja...   365   2e-99

>ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/204 (83%), Positives = 190/204 (93%)

Query: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDS 60
           MTIRLHRGDLPDLSRYT+SVAIDTETMGLHPHRDRLCVVQ+SNGDG+ADV+QIP+GH+D+
Sbjct: 1   MTIRLHRGDLPDLSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSDA 60

Query: 61  PNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLV 120
           PNLK LL +P + KIFHFARFD+A LYN FGVMP PVYCTKIASRL+RTYTDRHGLKDLV
Sbjct: 61  PNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLV 120

Query: 121 REVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQAC 180
           RE+LNV+LSKQQQSSDWGA++LS+AQLAYAASDVLHLH LR+KL+ MLARE RTDLAQAC
Sbjct: 121 RELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTDLAQAC 180

Query: 181 FDFLPTRARLDLDGWEAEDIFAHS 204
           F FLP R+RLDLDGW  EDIFAHS
Sbjct: 181 FGFLPHRSRLDLDGWSEEDIFAHS 204


>ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/204 (84%), Positives = 189/204 (92%)

Query: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDS 60
           MTIRLHRGDLPDLSRYTDSVAIDTETMGL+PHRDRLCVVQ+SNGDG+ADV+QIP GH+D+
Sbjct: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSDA 60

Query: 61  PNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLV 120
           PNLK LL +P ITKIFHFARFD+A LYN  GVMP PVYCTKIASRL+RTYTDRHGLKDLV
Sbjct: 61  PNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDLV 120

Query: 121 REVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQAC 180
           REVL V+LSKQQQSSDWGAQSLS+AQLAYAASDVLHLH LR +L+ MLAREGRT+LAQAC
Sbjct: 121 REVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQAC 180

Query: 181 FDFLPTRARLDLDGWEAEDIFAHS 204
           FDFLPTRA+LDL GW  +DIFAHS
Sbjct: 181 FDFLPTRAKLDLSGWAEQDIFAHS 204


>ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 191/204 (93%)

Query: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDS 60
           MT+RLHRGDLPDLSRYT SVAIDTETMGL+PHRDRLCVVQ+S GDG+ADV+QIPKGHTD+
Sbjct: 1   MTVRLHRGDLPDLSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTDA 60

Query: 61  PNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLV 120
           PNLKALLANP ITKIFHFARFDVA L++TFGVMP PVYCTKIASRL+RTYTDRHGLKDLV
Sbjct: 61  PNLKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDLV 120

Query: 121 REVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQAC 180
           RE+LNV+LSKQQQSSDWGA +LSE QLAYAASDVLHLHALR+KL+VMLAREGR  LAQAC
Sbjct: 121 RELLNVDLSKQQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLAREGRLGLAQAC 180

Query: 181 FDFLPTRARLDLDGWEAEDIFAHS 204
           F FLP RA LDL G+EAEDIFAHS
Sbjct: 181 FAFLPHRATLDLGGFEAEDIFAHS 204


>ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score =  366 bits (939), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 186/204 (91%)

Query: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDS 60
           MTIRLHRGDLPDLSRYT SVAIDTETMGLHPHRDRLCVVQ+SNGDG+ADV+QIP G TD+
Sbjct: 8   MTIRLHRGDLPDLSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPLGATDA 67

Query: 61  PNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLV 120
           PNLK LL +P + KIFHFARFD+A LY  FGVMP PVYCTKIASRL+RTYTDRHGLKDLV
Sbjct: 68  PNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLV 127

Query: 121 REVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQAC 180
           RE+L ++LSKQQQSSDWGA+SLS+AQLAYAASDVLHLHALRDKL+ MLAREGRTDLA AC
Sbjct: 128 RELLGIDLSKQQQSSDWGAESLSDAQLAYAASDVLHLHALRDKLDTMLAREGRTDLAAAC 187

Query: 181 FDFLPTRARLDLDGWEAEDIFAHS 204
           F FLP RARLDLDGW  EDIFAHS
Sbjct: 188 FGFLPVRARLDLDGWSEEDIFAHS 211


>ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score =  365 bits (938), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/204 (84%), Positives = 189/204 (92%)

Query: 1   MTIRLHRGDLPDLSRYTDSVAIDTETMGLHPHRDRLCVVQMSNGDGTADVIQIPKGHTDS 60
           MT+RLHRGDLPDLSRYT +VAIDTETMGL+PHRDRLCVVQ+S GDG+ADV+QIPKGHTD+
Sbjct: 1   MTVRLHRGDLPDLSRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTDA 60

Query: 61  PNLKALLANPKITKIFHFARFDVAVLYNTFGVMPTPVYCTKIASRLSRTYTDRHGLKDLV 120
           PNLKALLANP ITKIFHFARFDVAVLY +FGVM  P+YCTKIASRL+RTYTDRHGLKDLV
Sbjct: 61  PNLKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDLV 120

Query: 121 REVLNVELSKQQQSSDWGAQSLSEAQLAYAASDVLHLHALRDKLNVMLAREGRTDLAQAC 180
           REVLNV+LSKQQQSSDWG+ SL+E QLAYAASDVLHLHALR++L+ ML REGRT LA+AC
Sbjct: 121 REVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTGLAKAC 180

Query: 181 FDFLPTRARLDLDGWEAEDIFAHS 204
           FDFLPTRA LDL GW  EDIFAHS
Sbjct: 181 FDFLPTRALLDLQGWAEEDIFAHS 204