BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0200.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236330.1| hypothetical protein BBta_0124 [Bradyrhizobi... 296 1e-78 ref|YP_575539.1| hypothetical protein Nham_0178 [Nitrobacter ham... 295 3e-78 ref|NP_767360.1| hypothetical protein blr0720 [Bradyrhizobium ja... 295 5e-78 ref|YP_779366.1| hypothetical protein RPE_0427 [Rhodopseudomonas... 293 1e-77 ref|YP_530312.1| hypothetical protein RPC_0418 [Rhodopseudomonas... 283 2e-74 >ref|YP_001236330.1| hypothetical protein BBta_0124 [Bradyrhizobium sp. BTAi1] gb|ABQ32424.1| hypothetical protein BBta_0124 [Bradyrhizobium sp. BTAi1] Length = 233 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/236 (63%), Positives = 186/236 (78%), Gaps = 5/236 (2%) Query: 1 VNSVQNPAYVTGLEARFAAAARHSRMVRILRVAVPAMVGLAMAVIIYIALFNPFHDLIPK 60 +NSV NPAY L+ARFA AARHSR VR+LRVAVPA VGLAMAV+I +ALFNPFH I Sbjct: 1 MNSVHNPAYDPSLQARFAVAARHSRFVRVLRVAVPAAVGLAMAVVIGVALFNPFHMEINT 60 Query: 61 LPLEMDNLVVSGTKITMEAPHIAGFSNDGRPYEMWAKAAIQDVTDPDHVELKTIRAKVAQ 120 L NLV+SG KITME PH+ GF+ D RPY++ AK+A+QD+TDPDHVEL +RAKV Sbjct: 61 KNLT-GNLVISGRKITMETPHLTGFTPDQRPYDLVAKSAVQDLTDPDHVELNILRAKVLM 119 Query: 121 QDQSTVTMDARTGFFDNKKQLLDLRQDIFLQSSTGYEARLTQAFVDINKGNVSSDEHVDV 180 +DQSTVT++A+TG FD K+Q LDL++DI L +S+GYEARL++AFVD+ KG VSSDE VDV Sbjct: 120 EDQSTVTLNAKTGVFDTKQQQLDLKKDILLTTSSGYEARLSRAFVDMAKGTVSSDERVDV 179 Query: 181 KLLDGTLTADRLRIYNSGELVRFEGNVVMNLDKLGDNNAAPXPPPPPSP-KPRKSA 235 KL +GTL+ADRLRI ++G++VRFEGNVVMNLD + NAAP P +P ++A Sbjct: 180 KLTNGTLSADRLRITDNGDVVRFEGNVVMNLDNI---NAAPAATASSDPGRPARNA 232 >ref|YP_575539.1| hypothetical protein Nham_0178 [Nitrobacter hamburgensis X14] gb|ABE61079.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 258 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 143/213 (67%), Positives = 174/213 (81%), Gaps = 5/213 (2%) Query: 3 SVQNPAYV----TGLEARFAAAARHSRMVRILRVAVPAMVGLAMAVIIYIALFNPFHDLI 58 SVQNP Y TGLEARFA AARHSRMVR LR+AVPA+VGL MA +I +A+FNPF L Sbjct: 3 SVQNPTYQAGMQTGLEARFARAARHSRMVRALRIAVPAVVGLVMAALIAVAVFNPFRAL- 61 Query: 59 PKLPLEMDNLVVSGTKITMEAPHIAGFSNDGRPYEMWAKAAIQDVTDPDHVELKTIRAKV 118 KLPLEMDNLVVSGTKITME+PH++GF+ D RPYEM A A QD+TDPDHVEL T+RAKV Sbjct: 62 AKLPLEMDNLVVSGTKITMESPHLSGFTPDKRPYEMQATTATQDITDPDHVELHTLRAKV 121 Query: 119 AQQDQSTVTMDARTGFFDNKKQLLDLRQDIFLQSSTGYEARLTQAFVDINKGNVSSDEHV 178 +D+STVT+++RTG FD K Q+LDL +DI +QSSTGYEARL+ A VD+ +G V+SD+ V Sbjct: 122 LMEDRSTVTLNSRTGVFDTKTQMLDLHKDILMQSSTGYEARLSHALVDMGQGTVTSDQPV 181 Query: 179 DVKLLDGTLTADRLRIYNSGELVRFEGNVVMNL 211 DVKLL+GTLTAD +++ G++VRFE NVVM+L Sbjct: 182 DVKLLNGTLTADTMKVTEKGDVVRFENNVVMHL 214 >ref|NP_767360.1| hypothetical protein blr0720 [Bradyrhizobium japonicum USDA 110] dbj|BAC45985.1| blr0720 [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 147/216 (68%), Positives = 179/216 (82%) Query: 1 VNSVQNPAYVTGLEARFAAAARHSRMVRILRVAVPAMVGLAMAVIIYIALFNPFHDLIPK 60 +NS QNP Y L A+FA+AARHSR+VRILRVAVP V L++A I+ +++FNPF L+PK Sbjct: 1 MNSAQNPTYDAALAAKFASAARHSRLVRILRVAVPGAVLLSLAAIVGVSIFNPFRMLLPK 60 Query: 61 LPLEMDNLVVSGTKITMEAPHIAGFSNDGRPYEMWAKAAIQDVTDPDHVELKTIRAKVAQ 120 LPL+ NLVVSGTKITME+PH+AG++ D RPYE+WAK A QD+TDPDHV+L +RAKV Sbjct: 61 LPLDSGNLVVSGTKITMESPHLAGYTPDRRPYELWAKTATQDITDPDHVDLSDLRAKVLM 120 Query: 121 QDQSTVTMDARTGFFDNKKQLLDLRQDIFLQSSTGYEARLTQAFVDINKGNVSSDEHVDV 180 +DQST+ +DARTG FDNK+Q LDL +DIFL++STGYEARL AFVD+ KG VSSDE VDV Sbjct: 121 EDQSTLFLDARTGRFDNKQQQLDLHKDIFLRTSTGYEARLNSAFVDMGKGTVSSDERVDV 180 Query: 181 KLLDGTLTADRLRIYNSGELVRFEGNVVMNLDKLGD 216 KL +GTLTADRLRI G+L+RFEGNVVM+LDKL D Sbjct: 181 KLTNGTLTADRLRITEGGDLIRFEGNVVMHLDKLDD 216 >ref|YP_779366.1| hypothetical protein RPE_0427 [Rhodopseudomonas palustris BisA53] gb|ABJ04386.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 232 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/238 (61%), Positives = 177/238 (74%), Gaps = 10/238 (4%) Query: 1 VNSVQNPAYVTGLEARFAAAARHSRMVRILRVAVPAMVGLAMAVIIYIALFNPFHDLIPK 60 + S+ PA G+EARFA AARHSR+VRILRVAVP V LAMA I+ +++FNPF L+ K Sbjct: 1 MQSIPIPAQPAGMEARFAVAARHSRLVRILRVAVPLAVALAMAGIVAVSVFNPFR-LLAK 59 Query: 61 LPLEMDNLVVSGTKITMEAPHIAGFSNDGRPYEMWAKAAIQDVTDPDHVELKTIRAKVAQ 120 LPL+M NLVVSGT++TMEAPH++GFS DGRPYE+WAKAA QD+T PDHV+L TIRAKV Sbjct: 60 LPLDMGNLVVSGTRVTMEAPHLSGFSPDGRPYELWAKAATQDLTRPDHVDLATIRAKVVT 119 Query: 121 QDQSTVTMDARTGFFDNKKQLLDLRQDIFLQSSTGYEARLTQAFVDINKGNVSSDEHVDV 180 DQSTVT+DAR G FD K QLLDLR+D++LQSS GY+A +TQA VD+ KG V+SDE VDV Sbjct: 120 DDQSTVTIDARNGVFDTKAQLLDLRKDVYLQSSGGYQAWMTQALVDLGKGTVNSDEPVDV 179 Query: 181 KLLDGTLTADRLRIYNSGELVRFEGNVVMNLDKLGDNNAAPXPPPPPSPKPRKSANTK 238 GTL +LRI GEL+RFEG VVMNLD+ PPP+ +P A K Sbjct: 180 VWQGGTLRGQKLRISERGELIRFEGGVVMNLDR---------AEPPPASEPASGAPGK 228 >ref|YP_530312.1| hypothetical protein RPC_0418 [Rhodopseudomonas palustris BisB18] gb|ABD85993.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 244 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/205 (65%), Positives = 164/205 (80%), Gaps = 1/205 (0%) Query: 8 AYVTGLEARFAAAARHSRMVRILRVAVPAMVGLAMAVIIYIALFNPFHDLIPKLPLEMDN 67 +Y G+E RFAAAARHSR+VR+LRVAVP V LAMA I+ +++FNPF + KLP++M N Sbjct: 4 SYQAGMETRFAAAARHSRLVRLLRVAVPLAVLLAMAAIVAVSVFNPFR-FLAKLPVDMGN 62 Query: 68 LVVSGTKITMEAPHIAGFSNDGRPYEMWAKAAIQDVTDPDHVELKTIRAKVAQQDQSTVT 127 LVVSGTKITME+PH++GFS D RPYE+WAK A QD+T PDHV+L T+RAK+ QDQ+TVT Sbjct: 63 LVVSGTKITMESPHLSGFSPDQRPYELWAKTATQDLTTPDHVDLATLRAKLLTQDQATVT 122 Query: 128 MDARTGFFDNKKQLLDLRQDIFLQSSTGYEARLTQAFVDINKGNVSSDEHVDVKLLDGTL 187 +DAR G FD K QLLDLR+D++L SSTGYEA +T+AF+DI KG V SDE VDVK GTL Sbjct: 123 VDARQGLFDTKAQLLDLRKDVYLLSSTGYEAWMTRAFIDIGKGTVVSDEPVDVKWQGGTL 182 Query: 188 TADRLRIYNSGELVRFEGNVVMNLD 212 R+R+ GE+VRFEG VVMNLD Sbjct: 183 RGQRMRVTEKGEIVRFEGGVVMNLD 207