BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0195.p (199 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236326.1| sigma 54 modulation protein / SSU ribosomal ... 348 4e-94 ref|YP_001202333.1| sigma-54 modulation protein [Bradyrhizobium ... 347 6e-94 ref|ZP_08627787.1| ribosomal subunit interface protein [Bradyrhi... 338 4e-91 ref|YP_530308.1| sigma 54 modulation protein/ribosomal protein S... 327 6e-88 ref|YP_575533.1| sigma 54 modulation protein/ribosomal protein S... 320 7e-86 >ref|YP_001236326.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Bradyrhizobium sp. BTAi1] gb|ABQ32420.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Bradyrhizobium sp. BTAi1] Length = 200 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 169/200 (84%), Positives = 184/200 (92%), Gaps = 1/200 (0%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MTLRISGKSIS+ EALR RVSERTDEVLRKYFDGNYSGH+TLSKDGFGF+TDCALHLDSG Sbjct: 1 MTLRISGKSISVSEALRGRVSERTDEVLRKYFDGNYSGHVTLSKDGFGFKTDCALHLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 ITLEAESNA DAYASAD ALLMIEKRLRRYKSRLKDRSARK++AA AALA L+G LDAP Sbjct: 61 ITLEAESNAPDAYASADQALLMIEKRLRRYKSRLKDRSARKSHAANAALAGLDGAVLDAP 120 Query: 121 SYVIEAP-ENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRLN 179 SYVIEAP E ++E+T Y+PVIIAE TTALKRLSVSEAV+ELDL+GA C+VFQHG SGR+N Sbjct: 121 SYVIEAPAEGDEEITGYNPVIIAENTTALKRLSVSEAVLELDLSGAPCMVFQHGSSGRVN 180 Query: 180 IIYRRTDGNVGWVDPPAVSP 199 IIYRR DGN+GWVDPPAV P Sbjct: 181 IIYRRADGNIGWVDPPAVKP 200 >ref|YP_001202333.1| sigma-54 modulation protein [Bradyrhizobium sp. ORS 278] emb|CAL74083.1| putative sigma (54) modulation protein [Bradyrhizobium sp. ORS 278] Length = 200 Score = 347 bits (890), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 169/200 (84%), Positives = 183/200 (91%), Gaps = 1/200 (0%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MTLRISGKSIS+ EALR RVSERTDEVLRKYFDGNYSGH+TLSKDGFGF+TDCALHLDSG Sbjct: 1 MTLRISGKSISVSEALRGRVSERTDEVLRKYFDGNYSGHVTLSKDGFGFKTDCALHLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 ITLEAESNA DAYASAD ALLMIEKRLRRYKSRLKDRSARK++AA AALA L G LDAP Sbjct: 61 ITLEAESNAPDAYASADQALLMIEKRLRRYKSRLKDRSARKSHAANAALAGLEGAVLDAP 120 Query: 121 SYVIEAP-ENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRLN 179 SYVIEAP E ++E+T Y+PVIIAE TTALKRLSVSEAV+ELDL+GA C+VFQHG SGR+N Sbjct: 121 SYVIEAPAEGDEEITGYNPVIIAENTTALKRLSVSEAVLELDLSGAPCMVFQHGSSGRVN 180 Query: 180 IIYRRTDGNVGWVDPPAVSP 199 IIYRR DGN+GWVDPPAV P Sbjct: 181 IIYRRADGNIGWVDPPAVKP 200 >ref|ZP_08627787.1| ribosomal subunit interface protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09691.1| ribosomal subunit interface protein [Bradyrhizobiaceae bacterium SG-6C] Length = 207 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 171/198 (86%), Positives = 185/198 (93%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MTLR+SGKSISIGEALR RVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG Sbjct: 5 MTLRVSGKSISIGEALRDRVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 64 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 ITLEA+S AADAYASAD ALL+IEKRLRRYKSRLKDRSARK +AA AAL++LNG LDAP Sbjct: 65 ITLEADSMAADAYASADQALLLIEKRLRRYKSRLKDRSARKAHAAAAALSDLNGAALDAP 124 Query: 121 SYVIEAPENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRLNI 180 SYVIEAP ++DEV+E++PVIIAEATT+LKR SVSEAVMELDLTGA +VFQHG SGR+NI Sbjct: 125 SYVIEAPSDDDEVSEFNPVIIAEATTSLKRCSVSEAVMELDLTGAPVMVFQHGSSGRVNI 184 Query: 181 IYRRTDGNVGWVDPPAVS 198 IYRR DGNVGWVDPPAVS Sbjct: 185 IYRRPDGNVGWVDPPAVS 202 >ref|YP_530308.1| sigma 54 modulation protein/ribosomal protein S30EA [Rhodopseudomonas palustris BisB18] gb|ABD85989.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Rhodopseudomonas palustris BisB18] Length = 201 Score = 327 bits (838), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/199 (83%), Positives = 179/199 (89%), Gaps = 2/199 (1%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MT+R+SGKSIS+GEALR RVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG Sbjct: 1 MTIRVSGKSISVGEALRGRVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 ITLEAESNAADAYASAD ALL IEKRLRRYKSRLKDRSARK +AA AA+AEL LDAP Sbjct: 61 ITLEAESNAADAYASADQALLQIEKRLRRYKSRLKDRSARKIHAAAAAVAELGSATLDAP 120 Query: 121 SYVIEAPENEDEVTE--YSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRL 178 SYVIEAP+ E E+ + Y+ VIIAEATT+LKRLSVSEAVMELDLTGA +VF HGGSGR+ Sbjct: 121 SYVIEAPDTETEIADEGYNAVIIAEATTSLKRLSVSEAVMELDLTGAPVVVFLHGGSGRV 180 Query: 179 NIIYRRTDGNVGWVDPPAV 197 N+IYRR DGNVGWVDPP V Sbjct: 181 NVIYRRPDGNVGWVDPPVV 199 >ref|YP_575533.1| sigma 54 modulation protein/ribosomal protein S30EA [Nitrobacter hamburgensis X14] gb|ABE61073.1| SSU ribosomal protein S30P [Nitrobacter hamburgensis X14] Length = 198 Score = 320 bits (820), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 158/200 (79%), Positives = 174/200 (87%), Gaps = 7/200 (3%) Query: 1 MTLRISGKSISIGEALRARVSERTDEVLRKYFDGNYSGHITLSKDGFGFRTDCALHLDSG 60 MTLRISGKSI++GEALR R++ RTDEVLRKYFDG YSGHITL KDGFGFRTDCALHLDSG Sbjct: 1 MTLRISGKSINVGEALRGRLNSRTDEVLRKYFDGKYSGHITLCKDGFGFRTDCALHLDSG 60 Query: 61 ITLEAESNAADAYASADAALLMIEKRLRRYKSRLKDRSARKTYAATAALAELNGVGLDAP 120 +TLEAESNAADAYASAD ALL IEKRLRRYKSRLKDRSARK +A T A+A LDAP Sbjct: 61 VTLEAESNAADAYASADQALLQIEKRLRRYKSRLKDRSARKIHATTEAVAV-----LDAP 115 Query: 121 SYVIEAP--ENEDEVTEYSPVIIAEATTALKRLSVSEAVMELDLTGASCLVFQHGGSGRL 178 SYVIEAP + EDEVT ++PVIIAEA T+L+RLSVSEAVMELD TG LVFQHG SGR+ Sbjct: 116 SYVIEAPNVDGEDEVTAFNPVIIAEAITSLRRLSVSEAVMELDFTGVPVLVFQHGSSGRV 175 Query: 179 NIIYRRTDGNVGWVDPPAVS 198 N+IYRR DGNVGW+DPPAV+ Sbjct: 176 NVIYRRPDGNVGWIDPPAVN 195