BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0150.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770952.1| hypothetical protein blr4312 [Bradyrhizobium ja... 414 e-114 ref|YP_001242870.1| branched chain amino acid ABC transporter pe... 393 e-107 ref|NP_774469.1| hypothetical protein blr7829 [Bradyrhizobium ja... 386 e-105 ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopse... 383 e-104 ref|ZP_08628357.1| putative ABC-type branched-chain amino acid t... 382 e-104 >ref|NP_770952.1| hypothetical protein blr4312 [Bradyrhizobium japonicum USDA 110] dbj|BAC49577.1| blr4312 [Bradyrhizobium japonicum USDA 110] Length = 411 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/331 (59%), Positives = 250/331 (75%), Gaps = 4/331 (1%) Query: 1 VNGRKINLITLDDGYSPPKTVEQTRKLVEQEEVAAILNPLGTPTGLAVRKYLNDKKVPQL 60 +NGRKIN I+ DD YSPPK +EQ RKLVE +EV I PLGTP+ A+ KY+N KKVPQL Sbjct: 74 INGRKINFISYDDAYSPPKAIEQARKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQL 133 Query: 61 FVGAGATLWGDYAHYPWTIGFQPSYQAETAVYAKYVLTNKPDAKIALFYQNDDAGKDYGN 120 FV +G T +GD ++PWT+GFQP+YQ+E +YAKY+ N P+ KIA+F+QNDDAGKD Sbjct: 134 FVASGGTKFGDPRNFPWTMGFQPNYQSEGRIYAKYIRDNFPNGKIAVFWQNDDAGKDQFK 193 Query: 121 GFKKGLGPENTARMVVAETTYESTDPTVDSQIVKLKASGANVLFMHAIPKQAAQAIKKIG 180 G K GLG + A M++A+ +YE +DP++DSQIV L SGA++ F A PK +AQAI+K+G Sbjct: 194 GLKDGLG--DKAGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVG 251 Query: 181 EIGWKPDLFFLAATSTSVSSVLKPAGFEYSRDIISSYSLKDPNDPQWKDDKDVIAWQDFM 240 E+GWKP FFLA T+TSV+SVLKPAG +YS+DIIS+ LKDP DP W D V+ W++FM Sbjct: 252 ELGWKPK-FFLANTATSVASVLKPAGLDYSKDIISTVYLKDPTDPTWDKDPAVVKWREFM 310 Query: 241 KTYFPDGNLQDQLIVYGYVVAEATVQVLKQCGDDLTHENIMKQAANL-DIALPMFLPGIK 299 Y+PDG+ + +YGYV AEA QVLKQCGD+LT EN+MKQAANL D + LPGI Sbjct: 311 DKYYPDGDKANSNNIYGYVQAEAMAQVLKQCGDNLTRENVMKQAANLKDFHTDLMLPGIM 370 Query: 300 VKTSPTDYFPVEAMRLQRFNGETWQLFGDTI 330 V TSP DYFP+E M+L RFNG+ W+LFGD I Sbjct: 371 VNTSPDDYFPIEQMQLMRFNGQAWELFGDVI 401 >ref|YP_001242870.1| branched chain amino acid ABC transporter periplasmic-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38964.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 407 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 241/334 (72%), Gaps = 3/334 (0%) Query: 1 VNGRKINLITLDDGYSPPKTVEQTRKLVEQEEVAAILNPLGTPTGLAVRKYLNDKKVPQL 60 +NGRKIN ++ DD YSPPK VEQ RKLVE +EV I N LGTP+ A++KY+N KKVPQL Sbjct: 73 INGRKINFVSYDDAYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIQKYMNAKKVPQL 132 Query: 61 FVGAGATLWGDYAHYPWTIGFQPSYQAETAVYAKYVLTNKPDAKIALFYQNDDAGKDYGN 120 FV GAT W D +++PWT+G+QPSYQAE+ +YAKY+L KP AKIA+ YQNDD GKDY Sbjct: 133 FVATGATKWNDPSNFPWTMGWQPSYQAESRIYAKYLLKEKPGAKIAVLYQNDDYGKDYLK 192 Query: 121 GFKKGLGPENTARMVVAETTYESTDPTVDSQIVKLKASGANVLFMHAIPKQAAQAIKKIG 180 G K GLG + A M+V E +YE+T+PT+DS IVKLK++GA+V PK AAQAIKK+ Sbjct: 193 GLKDGLGAK-AASMIVMEESYETTEPTIDSHIVKLKSTGADVFMNITTPKFAAQAIKKVK 251 Query: 181 EIGWKPDLFFLAATSTSVSSVLKPAGFEYSRDIISSYSLKDPNDPQWKDDKDVIAWQDFM 240 EI WK L L S SV SVLKPAGFE S++IIS+ LKD +DPQWKDD + + DFM Sbjct: 252 EIDWKA-LHLLNNVSASVGSVLKPAGFENSQEIISAAYLKDVSDPQWKDDPGMKQFLDFM 310 Query: 241 KTYFPDGNLQDQLIVYGYVVAEATVQVLKQCGDDLTHENIMKQAANL-DIALPMFLPGIK 299 FP+G+ D V GY VA+ VQVLKQCGDDLT EN+MKQAA+L + M LPGI Sbjct: 311 AKEFPEGDKLDGGTVVGYAVAQTLVQVLKQCGDDLTRENVMKQAASLRNFRTEMLLPGIT 370 Query: 300 VKTSPTDYFPVEAMRLQRFNGETWQLFGDTIGND 333 + TS TD+ PV ++L RF GE W+LFGD I D Sbjct: 371 INTSATDFAPVSQLQLMRFKGEKWELFGDVISAD 404 >ref|NP_774469.1| hypothetical protein blr7829 [Bradyrhizobium japonicum USDA 110] dbj|BAC53094.1| blr7829 [Bradyrhizobium japonicum USDA 110] Length = 409 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/334 (56%), Positives = 242/334 (72%), Gaps = 3/334 (0%) Query: 1 VNGRKINLITLDDGYSPPKTVEQTRKLVEQEEVAAILNPLGTPTGLAVRKYLNDKKVPQL 60 +NGRKIN I+ DD YSPPKTVEQ RKLVE +EV I N LGTP A++KY+N KKVPQL Sbjct: 75 INGRKINYISYDDAYSPPKTVEQARKLVESDEVLFIFNSLGTPPNSAIQKYMNSKKVPQL 134 Query: 61 FVGAGATLWGDYAHYPWTIGFQPSYQAETAVYAKYVLTNKPDAKIALFYQNDDAGKDYGN 120 FV GAT W D ++PWT+G+QP+YQ+ET +YAK++L NKPDAKIA+ YQNDD GKDY Sbjct: 135 FVATGATKWNDPQNFPWTMGWQPNYQSETQIYAKWLLKNKPDAKIAVLYQNDDYGKDYLK 194 Query: 121 GFKKGLGPENTARMVVAETTYESTDPTVDSQIVKLKASGANVLFMHAIPKQAAQAIKKIG 180 G K GLG + A M+V E +YE+++PT+D+ IVKLK++GA+V PK AAQAIKK Sbjct: 195 GLKDGLGAK-AASMIVIEESYETSEPTIDNHIVKLKSTGADVFMNITTPKFAAQAIKKNS 253 Query: 181 EIGWKPDLFFLAATSTSVSSVLKPAGFEYSRDIISSYSLKDPNDPQWKDDKDVIAWQDFM 240 EIGWKP L FL S SV SV+KPAGFE +DIIS+ LKD +DP W +D + + FM Sbjct: 254 EIGWKP-LHFLNNVSASVGSVMKPAGFENGQDIISADYLKDVSDPAWNNDAGMKEFLAFM 312 Query: 241 KTYFPDGNLQDQLIVYGYVVAEATVQVLKQCGDDLTHENIMKQAANL-DIALPMFLPGIK 299 YFP+G+ D+ + G+ VA+ VQVLKQCGD+LT ENIMK+AANL + LPGI+ Sbjct: 313 TKYFPEGDKLDKGTIVGFAVAQTVVQVLKQCGDNLTRENIMKEAANLKNFRTEALLPGIQ 372 Query: 300 VKTSPTDYFPVEAMRLQRFNGETWQLFGDTIGND 333 + T P D+ P+ ++L++F GE W+LFGD I D Sbjct: 373 INTGPNDFAPISQLQLEKFKGERWELFGDVISAD 406 >ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07717.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 409 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/334 (56%), Positives = 241/334 (72%), Gaps = 3/334 (0%) Query: 1 VNGRKINLITLDDGYSPPKTVEQTRKLVEQEEVAAILNPLGTPTGLAVRKYLNDKKVPQL 60 +NGRKIN ++ DD YSPPK VEQ RKLVE +EV I N LGTP+ A++KY+N KKVPQL Sbjct: 75 INGRKINFVSYDDAYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIQKYMNAKKVPQL 134 Query: 61 FVGAGATLWGDYAHYPWTIGFQPSYQAETAVYAKYVLTNKPDAKIALFYQNDDAGKDYGN 120 FV GAT W D +PWT+G+QP+YQ+ET +YAKY+L P +KIA+ YQNDD GKDY Sbjct: 135 FVATGATKWNDPKDFPWTMGWQPNYQSETQIYAKYILKQMPTSKIAVLYQNDDYGKDYLK 194 Query: 121 GFKKGLGPENTARMVVAETTYESTDPTVDSQIVKLKASGANVLFMHAIPKQAAQAIKKIG 180 G K GLG + ++ M+V E +YE+++PT+D+ IVKLK++GA++ PK AAQAIKK Sbjct: 195 GLKDGLGAKASS-MIVMEESYETSEPTIDNHIVKLKSTGADIFINITTPKFAAQAIKKNA 253 Query: 181 EIGWKPDLFFLAATSTSVSSVLKPAGFEYSRDIISSYSLKDPNDPQWKDDKDVIAWQDFM 240 EIGWKP + FL S SV SVLKPAGFE ++DIIS+ LKD DPQWKDD + + FM Sbjct: 254 EIGWKP-IHFLNNVSASVGSVLKPAGFENAQDIISAAYLKDVTDPQWKDDAGMKDFLAFM 312 Query: 241 KTYFPDGNLQDQLIVYGYVVAEATVQVLKQCGDDLTHENIMKQAANL-DIALPMFLPGIK 299 FP+GN D +V GY VA+ V+VLK+ GD+LT EN+MKQAA+L D + LPGIK Sbjct: 313 DKDFPEGNKLDNAVVVGYGVAQTLVEVLKKSGDNLTRENVMKQAASLKDFRTEVLLPGIK 372 Query: 300 VKTSPTDYFPVEAMRLQRFNGETWQLFGDTIGND 333 + TS +D+ P+ ++LQRF GE W+LFGD I D Sbjct: 373 INTSASDFAPISQLQLQRFKGEKWELFGDVISAD 406 >ref|ZP_08628357.1| putative ABC-type branched-chain amino acid transporter [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08860.1| putative ABC-type branched-chain amino acid transporter [Bradyrhizobiaceae bacterium SG-6C] Length = 408 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/334 (55%), Positives = 238/334 (71%), Gaps = 3/334 (0%) Query: 1 VNGRKINLITLDDGYSPPKTVEQTRKLVEQEEVAAILNPLGTPTGLAVRKYLNDKKVPQL 60 +NGRKIN I+ DDGYSPPK VEQ RKLVE +EV + PLGTP+ A++KYLN KKVPQL Sbjct: 74 INGRKINFISYDDGYSPPKAVEQARKLVESDEVLIVYGPLGTPSNSAIQKYLNAKKVPQL 133 Query: 61 FVGAGATLWGDYAHYPWTIGFQPSYQAETAVYAKYVLTNKPDAKIALFYQNDDAGKDYGN 120 FV GAT W D +PWT+G+QP+YQ+E +YA Y+L KP+AKI + YQNDD GKDY Sbjct: 134 FVATGATKWNDPKDFPWTMGWQPNYQSEGRIYANYLLKEKPNAKIGILYQNDDYGKDYLK 193 Query: 121 GFKKGLGPENTARMVVAETTYESTDPTVDSQIVKLKASGANVLFMHAIPKQAAQAIKKIG 180 G K GLG + A M++AE +YE++ PT+DSQ+V LK+ GA+V PK AAQ+IKK+ Sbjct: 194 GIKDGLGKKG-ASMIIAEESYETSVPTIDSQVVALKSKGADVFISITTPKFAAQSIKKVA 252 Query: 181 EIGWKPDLFFLAATSTSVSSVLKPAGFEYSRDIISSYSLKDPNDPQWKDDKDVIAWQDFM 240 E+ WKP LF L S SV SV+KPAGFE S++IIS+ KDP DPQWKDDK + + F+ Sbjct: 253 ELEWKP-LFILNNVSASVGSVIKPAGFENSQNIISAAYAKDPTDPQWKDDKGMKNYDAFL 311 Query: 241 KTYFPDGNLQDQLIVYGYVVAEATVQVLKQCGDDLTHENIMKQAANL-DIALPMFLPGIK 299 + Y PD N D ++YGY A+ V VLK CGD+LT NIMKQAA++ ++ L LPG+K Sbjct: 312 QKYAPDLNRADGSVIYGYNSAQTLVHVLKACGDNLTRANIMKQAASMKNLELEGLLPGVK 371 Query: 300 VKTSPTDYFPVEAMRLQRFNGETWQLFGDTIGND 333 + TS TD+ P+ M+L RF G+TW+ FGD + D Sbjct: 372 INTSATDFAPISQMQLMRFKGQTWERFGDILSGD 405