BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0144.p         (184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01044768.1| helicase [Nitrobacter sp. Nb-311A] >gi|856996...   184   7e-45
ref|YP_779068.1| helicase domain-containing protein [Rhodopseudo...   183   1e-44
ref|YP_001202810.1| putative ATP-dependent RNA and DNA helicase/...   182   1e-44
ref|YP_575854.1| helicase-like [Nitrobacter hamburgensis X14] >g...   182   2e-44
ref|NP_766799.1| ATP-dependent helicase [Bradyrhizobium japonicu...   182   3e-44

>ref|ZP_01044768.1| helicase [Nitrobacter sp. Nb-311A]
 gb|EAQ37549.1| helicase [Nitrobacter sp. Nb-311A]
          Length = 1128

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/97 (90%), Positives = 93/97 (95%)

Query: 2   PGAGVTAVLGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIADRAGVDNVALVT 61
           PGAGVTAVLGPTNTGKTHLAIERMLAHSSG+IGLPLRLLARE+YNKI DRAGV++VALVT
Sbjct: 16  PGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREIYNKIVDRAGVESVALVT 75

Query: 62  GEEKIKPKAPRFWVSTVEAMPRDLDVSFLAVDEIQXA 98
           GEEKIKP  PRFWVSTVEAMPRDLDVSFLA+DEIQ A
Sbjct: 76  GEEKIKPARPRFWVSTVEAMPRDLDVSFLAIDEIQIA 112


>ref|YP_779068.1| helicase domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ04088.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
          Length = 1116

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/97 (90%), Positives = 94/97 (96%)

Query: 2   PGAGVTAVLGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIADRAGVDNVALVT 61
           PGAGVTAVLGPTNTGKTHLAIERMLAHSSG+IGLPLRLLAREVYNKIADRAG ++VAL+T
Sbjct: 16  PGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPESVALIT 75

Query: 62  GEEKIKPKAPRFWVSTVEAMPRDLDVSFLAVDEIQXA 98
           GEEKIKP+ PR+WVSTVEAMPRDLDVSFLAVDEIQ A
Sbjct: 76  GEEKIKPQKPRYWVSTVEAMPRDLDVSFLAVDEIQIA 112


>ref|YP_001202810.1| putative ATP-dependent RNA and DNA helicase/translation initiation
           factor 2 [Bradyrhizobium sp. ORS 278]
 emb|CAL74570.1| Conserved hypothetical protein; putative ATP-dependent RNA and DNA
           helicase (N-terminal) and translation initiation factor
           2 (IF-2; GTPase) (C-terminal) [Bradyrhizobium sp. ORS
           278]
          Length = 1170

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 2   PGAGVTAVLGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIADRAGVDNVALVT 61
           PG+GVTAVLGPTNTGKTHLAIERMLAHSSG+IGLPLRLLAREVYNKIADR G + VAL+T
Sbjct: 24  PGSGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSETVALIT 83

Query: 62  GEEKIKPKAPRFWVSTVEAMPRDLDVSFLAVDEIQXA 98
           GEEKIKPK+PR+WVSTVEAMPRDLDVSFLAVDEIQ A
Sbjct: 84  GEEKIKPKSPRYWVSTVEAMPRDLDVSFLAVDEIQIA 120


>ref|YP_575854.1| helicase-like [Nitrobacter hamburgensis X14]
 gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 1140

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 91/95 (95%)

Query: 2   PGAGVTAVLGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIADRAGVDNVALVT 61
           PG GVTAVLGPTNTGKTHLAIERMLAHSSG+IGLPLRLLAREVYNKIADRAG D+VAL+T
Sbjct: 16  PGTGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPDSVALIT 75

Query: 62  GEEKIKPKAPRFWVSTVEAMPRDLDVSFLAVDEIQ 96
           GEEKIKP  PRFWVSTVEAMPRDLDVSFLAVDEIQ
Sbjct: 76  GEEKIKPARPRFWVSTVEAMPRDLDVSFLAVDEIQ 110


>ref|NP_766799.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45424.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
          Length = 1123

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 2   PGAGVTAVLGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIADRAGVDNVALVT 61
           PGAGVTAVLGPTNTGKTHLAIERMLAH SG+IGLPLRLLAREVYNKIADR GV++VAL+T
Sbjct: 14  PGAGVTAVLGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKIADRKGVESVALIT 73

Query: 62  GEEKIKPKAPRFWVSTVEAMPRDLDVSFLAVDEIQXA 98
           GEEKIKPK PR+WVSTVEAMPRDLDVSFLAVDE+Q A
Sbjct: 74  GEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEVQIA 110