BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0139.p         (207 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_568899.1| beta-lactamase [Rhodopseudomonas palustris BisB...   188   5e-46
ref|NP_772349.1| hypothetical protein bll5709 [Bradyrhizobium ja...   186   1e-45
ref|YP_487308.1| beta-lactamase [Rhodopseudomonas palustris HaA2...   183   1e-44
ref|YP_004110207.1| beta-lactamase [Rhodopseudomonas palustris D...   181   4e-44
ref|YP_001990800.1| beta-lactamase [Rhodopseudomonas palustris T...   180   1e-43

>ref|YP_568899.1| beta-lactamase [Rhodopseudomonas palustris BisB5]
 gb|ABE38998.1| beta-lactamase [Rhodopseudomonas palustris BisB5]
          Length = 431

 Score =  188 bits (477), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 101/124 (81%)

Query: 84  TVRRITPLLNGGTFDGKTILKPETFKELTTDRVGPGSGVERDFFYFPGDGFGFGLGIAVR 143
            +R +  LL+ G  DGK  L    FKE+TTD++GPGSG+ RD FYFPGDGFG+G G+ VR
Sbjct: 308 VIRFVRMLLHKGELDGKRYLSEAGFKEMTTDQIGPGSGIARDHFYFPGDGFGYGYGLGVR 367

Query: 144 TDPGTAKPPPPGDLGELKWDGASGCYYVIDRKQDFFFVLLEQTPTERQRIQRTLKQLVYE 203
           TDPG AKPPPPG +GELKWDGASGCY+V+D KQ+ FFVL+EQTP++RQ IQR LK+LVYE
Sbjct: 368 TDPGNAKPPPPGSIGELKWDGASGCYFVVDPKQEMFFVLMEQTPSQRQPIQRELKKLVYE 427

Query: 204 AMEN 207
           AMEN
Sbjct: 428 AMEN 431


>ref|NP_772349.1| hypothetical protein bll5709 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50974.1| bll5709 [Bradyrhizobium japonicum USDA 110]
          Length = 446

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/117 (86%), Positives = 110/117 (94%)

Query: 91  LLNGGTFDGKTILKPETFKELTTDRVGPGSGVERDFFYFPGDGFGFGLGIAVRTDPGTAK 150
           LLNGG+ DGKTILKPETFK + TD+VGPGSGV+RD+FYFPGDGFGFGLG+AVRTDPG AK
Sbjct: 330 LLNGGSLDGKTILKPETFKLMVTDQVGPGSGVDRDYFYFPGDGFGFGLGLAVRTDPGNAK 389

Query: 151 PPPPGDLGELKWDGASGCYYVIDRKQDFFFVLLEQTPTERQRIQRTLKQLVYEAMEN 207
           PPPPGDLGELKWDGASGCY+V+D KQD FFVLLEQTPTERQR+QRTLKQLVYEAME 
Sbjct: 390 PPPPGDLGELKWDGASGCYFVVDPKQDMFFVLLEQTPTERQRVQRTLKQLVYEAMEK 446


>ref|YP_487308.1| beta-lactamase [Rhodopseudomonas palustris HaA2]
 gb|ABD08397.1| Beta-lactamase [Rhodopseudomonas palustris HaA2]
          Length = 430

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 98/124 (79%)

Query: 84  TVRRITPLLNGGTFDGKTILKPETFKELTTDRVGPGSGVERDFFYFPGDGFGFGLGIAVR 143
            +R +  LL+ G  DGK  L    FK +TTD +GP SG+ RD FYFPGDGFG+G G+AVR
Sbjct: 307 VIRFVRMLLHKGELDGKRYLSEAAFKAMTTDHIGPSSGIARDHFYFPGDGFGYGYGLAVR 366

Query: 144 TDPGTAKPPPPGDLGELKWDGASGCYYVIDRKQDFFFVLLEQTPTERQRIQRTLKQLVYE 203
           TDPG AKPPPPG LGELKWDGASGCY+V+D KQ+ FFVL+EQTP++RQ +QR LK+LVYE
Sbjct: 367 TDPGNAKPPPPGSLGELKWDGASGCYFVVDPKQEMFFVLMEQTPSQRQPVQRELKKLVYE 426

Query: 204 AMEN 207
           A+ N
Sbjct: 427 ALAN 430


>ref|YP_004110207.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
 gb|ADU45474.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
          Length = 426

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 98/124 (79%)

Query: 84  TVRRITPLLNGGTFDGKTILKPETFKELTTDRVGPGSGVERDFFYFPGDGFGFGLGIAVR 143
            +R +  L N G  DGK  L    FK++TTD++GP SG+ERD+FYFPGDGFG+G G+ VR
Sbjct: 303 VIRFVRMLHNKGELDGKRYLSEAVFKDMTTDQIGPNSGIERDYFYFPGDGFGYGYGLGVR 362

Query: 144 TDPGTAKPPPPGDLGELKWDGASGCYYVIDRKQDFFFVLLEQTPTERQRIQRTLKQLVYE 203
           TD G AKPPPPG LGELKWDGASGCY+VID K D FFVL+EQTP+ RQ IQR LK+LVYE
Sbjct: 363 TDAGHAKPPPPGSLGELKWDGASGCYFVIDPKLDMFFVLMEQTPSHRQPIQRELKKLVYE 422

Query: 204 AMEN 207
           A++N
Sbjct: 423 ALDN 426


>ref|YP_001990800.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
 gb|ACF00325.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
          Length = 426

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 96/124 (77%)

Query: 84  TVRRITPLLNGGTFDGKTILKPETFKELTTDRVGPGSGVERDFFYFPGDGFGFGLGIAVR 143
            +R +  L N G  DGK  L    FK++TTD + P SGVERD+FYFPGDGFG+G G+ VR
Sbjct: 303 VIRFVRMLHNKGELDGKRYLSEAVFKDMTTDHIAPSSGVERDYFYFPGDGFGYGYGLGVR 362

Query: 144 TDPGTAKPPPPGDLGELKWDGASGCYYVIDRKQDFFFVLLEQTPTERQRIQRTLKQLVYE 203
           TD G AKPPPPG LGELKWDGASGCY+V+D K D FFVL+EQTP+ RQ IQR LK+LVYE
Sbjct: 363 TDAGNAKPPPPGSLGELKWDGASGCYFVVDPKLDMFFVLMEQTPSHRQPIQRELKKLVYE 422

Query: 204 AMEN 207
           A++N
Sbjct: 423 ALDN 426