BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0135.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772514.1| D-galactarate dehydratase [Bradyrhizobium japon... 975 0.0 ref|YP_001242305.1| (D)-galactarate dehydrogenase [Bradyrhizobiu... 924 0.0 ref|YP_001203681.1| (D)-galactarate dehydrogenase [Bradyrhizobiu... 915 0.0 ref|YP_002499853.1| galactarate dehydratase [Methylobacterium no... 778 0.0 ref|YP_001770104.1| galactarate dehydratase [Methylobacterium sp... 772 0.0 >ref|NP_772514.1| D-galactarate dehydratase [Bradyrhizobium japonicum USDA 110] dbj|BAC51139.1| D-galactarate dehydratase [Bradyrhizobium japonicum USDA 110] Length = 513 Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/513 (92%), Positives = 491/513 (95%) Query: 1 MDQSIGAQEQPRYIKLNERDNVAIVVNDFGLPAGSRFASGLTLRAFVPQGHKTALEDIAE 60 MDQS+ A+EQ RYIKLNERDNVAIVVNDFGLPAGSRFA GLTLRAFVPQGHKTAL DIAE Sbjct: 1 MDQSVAAKEQSRYIKLNERDNVAIVVNDFGLPAGSRFACGLTLRAFVPQGHKTALVDIAE 60 Query: 61 GAPIIRYGEVIGTALSPILAGEWVDEARIRMPDAPPLDQLEVATAVPPALPPLEGFTFEG 120 G PIIRYGEVIG ALSPILAGEWVDEARIRMP+AP LD+LE++TAVP LPPLEGFTFEG Sbjct: 61 GTPIIRYGEVIGYALSPILAGEWVDEARIRMPEAPALDKLEISTAVPAPLPPLEGFTFEG 120 Query: 121 YRNPDGSVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVA 180 YRNPDGSVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVA Sbjct: 121 YRNPDGSVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVA 180 Query: 181 ITAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLVPEGVGDAIVRMQDEAFDG 240 I APDAVVPIRTLQNLALNPNFGGEILV+ LGCEKLAPERLVPEG+ DAIVRMQDEAFDG Sbjct: 181 INAPDAVVPIRTLQNLALNPNFGGEILVISLGCEKLAPERLVPEGISDAIVRMQDEAFDG 240 Query: 241 FGAIVDAIMTQAEARLKVLNTRKRETCPAADLVIGLQCGGSDAFSGVTANPAVGFAADLL 300 FGAIVDAIMTQAEARLK+LN R RETCPA+DLVIGLQCGGSDAFSGVTANPAVGFAADLL Sbjct: 241 FGAIVDAIMTQAEARLKILNKRTRETCPASDLVIGLQCGGSDAFSGVTANPAVGFAADLL 300 Query: 301 VRAGATVMFSEVTEVRDAIALLTRRAVNEDVGRALIREMEWYDAYLARGGADRSANTTPG 360 VRAGATVMFSEVTEVRDAI LLTRRA+NEDVGRAL+REM WYD+YLARGGADRSANTTPG Sbjct: 301 VRAGATVMFSEVTEVRDAIQLLTRRAINEDVGRALVREMAWYDSYLARGGADRSANTTPG 360 Query: 361 NKKGGLANIVEKSLGSIVKSGSGPIAGVLSPGEKARQKGMLFAATPASDFICGTLQLASG 420 NKKGGLANIVEKSLGSIVKSGS I GVLSPGEKA QKGMLFAATPASDFICGTLQLASG Sbjct: 361 NKKGGLANIVEKSLGSIVKSGSSAITGVLSPGEKATQKGMLFAATPASDFICGTLQLASG 420 Query: 421 MTLQVFTTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFDAGCIATGEKTIEETGWDLF 480 MTLQVFTTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFD+G IATGEKTIEE GWDLF Sbjct: 421 MTLQVFTTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFDSGSIATGEKTIEECGWDLF 480 Query: 481 RLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 513 RLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT Sbjct: 481 RLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 513 >ref|YP_001242305.1| (D)-galactarate dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ38399.1| galactarate dehydratase [Bradyrhizobium sp. BTAi1] Length = 513 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/513 (87%), Positives = 484/513 (94%) Query: 1 MDQSIGAQEQPRYIKLNERDNVAIVVNDFGLPAGSRFASGLTLRAFVPQGHKTALEDIAE 60 M+Q + A ++PR IKLN RDNVAIVVNDFGLPAG++ GLTL++FVPQGHKTAL DI E Sbjct: 1 MNQQVVANQEPRTIKLNARDNVAIVVNDFGLPAGTKLPDGLTLKSFVPQGHKTALVDIPE 60 Query: 61 GAPIIRYGEVIGTALSPILAGEWVDEARIRMPDAPPLDQLEVATAVPPALPPLEGFTFEG 120 GAPIIRYGE+IGTA SPI AGEWVDEARI MP+AP LD+LE++TAVP LPPLEG+TFEG Sbjct: 61 GAPIIRYGEIIGTAKSPIAAGEWVDEARIDMPEAPGLDKLEISTAVPAPLPPLEGYTFEG 120 Query: 121 YRNPDGSVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVA 180 YRN DGSVGT+N+LGIS+SVQCVKGT+E+A+KRI++ELLPKYPNVDDVV LTHAYGCGVA Sbjct: 121 YRNADGSVGTRNVLGISTSVQCVKGTLEFAIKRIKSELLPKYPNVDDVVALTHAYGCGVA 180 Query: 181 ITAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLVPEGVGDAIVRMQDEAFDG 240 I+APDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERL+PEG D+IVRMQDEAFDG Sbjct: 181 ISAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLLPEGTEDSIVRMQDEAFDG 240 Query: 241 FGAIVDAIMTQAEARLKVLNTRKRETCPAADLVIGLQCGGSDAFSGVTANPAVGFAADLL 300 FGAIV+AIMTQA+ RL LN R+RETCPA+DLVIGLQCGGSDAFSGVTANPAVGFAADLL Sbjct: 241 FGAIVEAIMTQADRRLAQLNKRRRETCPASDLVIGLQCGGSDAFSGVTANPAVGFAADLL 300 Query: 301 VRAGATVMFSEVTEVRDAIALLTRRAVNEDVGRALIREMEWYDAYLARGGADRSANTTPG 360 VRAGATVMFSEVTEVRDAI LLTRRA+NEDVGRALIREM+WYDAYL RGGADRSANTTPG Sbjct: 301 VRAGATVMFSEVTEVRDAIQLLTRRAINEDVGRALIREMDWYDAYLKRGGADRSANTTPG 360 Query: 361 NKKGGLANIVEKSLGSIVKSGSGPIAGVLSPGEKARQKGMLFAATPASDFICGTLQLASG 420 NKKGGLANIVEKSLGSIVKSGSGPI GVL+PGEKA+QKGMLFAATPASDFICGTLQLASG Sbjct: 361 NKKGGLANIVEKSLGSIVKSGSGPIHGVLAPGEKAKQKGMLFAATPASDFICGTLQLASG 420 Query: 421 MTLQVFTTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFDAGCIATGEKTIEETGWDLF 480 MTLQVFTTGRGTPYGLAAAPVIKVATR+ELARRWKDLIDFDAG IATGE TIEETGW+LF Sbjct: 421 MTLQVFTTGRGTPYGLAAAPVIKVATRTELARRWKDLIDFDAGRIATGEMTIEETGWELF 480 Query: 481 RLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 513 +LILDVASGRTKPWSDRWGIHNDLTLFNPAPVT Sbjct: 481 KLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 513 >ref|YP_001203681.1| (D)-galactarate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL75444.1| (D)-galactarate dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 512 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/513 (87%), Positives = 479/513 (93%), Gaps = 1/513 (0%) Query: 1 MDQSIGAQEQPRYIKLNERDNVAIVVNDFGLPAGSRFASGLTLRAFVPQGHKTALEDIAE 60 M+Q + QE PR IKLN RDNVAIVVNDFGLPAG++ GLTL+ FVPQGHKTAL DIAE Sbjct: 1 MNQQVVNQE-PRIIKLNARDNVAIVVNDFGLPAGTKLPDGLTLKTFVPQGHKTALVDIAE 59 Query: 61 GAPIIRYGEVIGTALSPILAGEWVDEARIRMPDAPPLDQLEVATAVPPALPPLEGFTFEG 120 GAPIIRYGE+IG A S I AGEWVDEARI MP+AP LDQLE++TAVP LPPL+G+TFEG Sbjct: 60 GAPIIRYGEIIGYAKSLIAAGEWVDEARIDMPEAPALDQLEISTAVPAPLPPLDGYTFEG 119 Query: 121 YRNPDGSVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVA 180 YRN DGSVGT+N+LGIS+SVQCVKGT+E+A+KRI +ELLPKYPNVDDVV LTHAYGCGVA Sbjct: 120 YRNADGSVGTRNVLGISTSVQCVKGTLEFAIKRINSELLPKYPNVDDVVALTHAYGCGVA 179 Query: 181 ITAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLVPEGVGDAIVRMQDEAFDG 240 ITAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERL+PEG D+IVRMQDEAFDG Sbjct: 180 ITAPDAVVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLLPEGTEDSIVRMQDEAFDG 239 Query: 241 FGAIVDAIMTQAEARLKVLNTRKRETCPAADLVIGLQCGGSDAFSGVTANPAVGFAADLL 300 FGAIVDAIMTQA+ RL LN R R+TCPA+DLVIGLQCGGSDAFSGVTANPAVGFAADLL Sbjct: 240 FGAIVDAIMTQADRRLAELNKRTRQTCPASDLVIGLQCGGSDAFSGVTANPAVGFAADLL 299 Query: 301 VRAGATVMFSEVTEVRDAIALLTRRAVNEDVGRALIREMEWYDAYLARGGADRSANTTPG 360 VRAGATVMFSEVTEVRDAI LLTRRA+NE+VGRALIREM+WYDAYL RGGADRSANTTPG Sbjct: 300 VRAGATVMFSEVTEVRDAIQLLTRRAINEEVGRALIREMDWYDAYLKRGGADRSANTTPG 359 Query: 361 NKKGGLANIVEKSLGSIVKSGSGPIAGVLSPGEKARQKGMLFAATPASDFICGTLQLASG 420 NKKGGLANIVEKSLGSIVKSGSGPI GVL+PGEKA+QKGMLFAATPASDFICGTLQLASG Sbjct: 360 NKKGGLANIVEKSLGSIVKSGSGPIHGVLAPGEKAKQKGMLFAATPASDFICGTLQLASG 419 Query: 421 MTLQVFTTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFDAGCIATGEKTIEETGWDLF 480 MTLQVFTTGRGTPYGLAAAPVIKVATR+ELARRWKDLIDFDAG IATGE TIEETGW+LF Sbjct: 420 MTLQVFTTGRGTPYGLAAAPVIKVATRTELARRWKDLIDFDAGRIATGEMTIEETGWELF 479 Query: 481 RLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 513 +LILDVASGRTKPWSDRWGIHNDLTLFNPAPVT Sbjct: 480 KLILDVASGRTKPWSDRWGIHNDLTLFNPAPVT 512 >ref|YP_002499853.1| galactarate dehydratase [Methylobacterium nodulans ORS 2060] gb|ACL59550.1| galactarate dehydratase [Methylobacterium nodulans ORS 2060] Length = 516 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/505 (74%), Positives = 431/505 (85%) Query: 9 EQPRYIKLNERDNVAIVVNDFGLPAGSRFASGLTLRAFVPQGHKTALEDIAEGAPIIRYG 68 E PR I+++E DNVAIVVN FGLPAG+ F GL LR FVPQGHK AL DIA G + RYG Sbjct: 12 EVPRTIRVHEADNVAIVVNAFGLPAGTVFPDGLVLREFVPQGHKVALADIAAGEAVRRYG 71 Query: 69 EVIGTALSPILAGEWVDEARIRMPDAPPLDQLEVATAVPPALPPLEGFTFEGYRNPDGSV 128 EVIGTA I G WV+E+R+R P AP LD LE+AT VP LPPL+G+TFEGYRNPDGSV Sbjct: 72 EVIGTAREDIPRGAWVEESRMRTPPAPALDALELATRVPAPLPPLDGYTFEGYRNPDGSV 131 Query: 129 GTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVAITAPDAVV 188 GT+NIL IS+SVQCV GT++ A++RIR ELLP+YPNVDDVV LTHAYGCGVAI AP+A + Sbjct: 132 GTRNILAISTSVQCVAGTLDVAIRRIREELLPRYPNVDDVVGLTHAYGCGVAINAPEAAI 191 Query: 189 PIRTLQNLALNPNFGGEILVVGLGCEKLAPERLVPEGVGDAIVRMQDEAFDGFGAIVDAI 248 PIRTLQ+LA NPNFGGE++VVGLGCEKL ERL+P+G + +VR+QDE GFG ++D+I Sbjct: 192 PIRTLQSLARNPNFGGEVMVVGLGCEKLVAERLLPDGQTEGVVRLQDERHQGFGMMLDSI 251 Query: 249 MTQAEARLKVLNTRKRETCPAADLVIGLQCGGSDAFSGVTANPAVGFAADLLVRAGATVM 308 M AEARL+VLN R+RETCPA+DLV+GLQCGGSDAFSGVTANPA+GFAADLLVR GATV+ Sbjct: 252 MAMAEARLEVLNRRRRETCPASDLVVGLQCGGSDAFSGVTANPALGFAADLLVRCGATVL 311 Query: 309 FSEVTEVRDAIALLTRRAVNEDVGRALIREMEWYDAYLARGGADRSANTTPGNKKGGLAN 368 FSEVTEVRDAI LLT RA E+V RALIREM WYDAYLARG ADRSAN +PGNKKGGL Sbjct: 312 FSEVTEVRDAIHLLTPRAETEEVARALIREMAWYDAYLARGEADRSANPSPGNKKGGLNT 371 Query: 369 IVEKSLGSIVKSGSGPIAGVLSPGEKARQKGMLFAATPASDFICGTLQLASGMTLQVFTT 428 IVEK+LGS+ KSG+ I GVL+PGE+ RQKG++FAATPASDF+CGTLQLASG+TLQVF+T Sbjct: 372 IVEKALGSVAKSGTSAIRGVLAPGERVRQKGLIFAATPASDFVCGTLQLASGITLQVFST 431 Query: 429 GRGTPYGLAAAPVIKVATRSELARRWKDLIDFDAGCIATGEKTIEETGWDLFRLILDVAS 488 GRGTPYGL APVIKVATR+EL+ RW DLID DAG IATG+ TIEE GW+LFRLILDVAS Sbjct: 432 GRGTPYGLKQAPVIKVATRTELSERWSDLIDLDAGRIATGKATIEEMGWELFRLILDVAS 491 Query: 489 GRTKPWSDRWGIHNDLTLFNPAPVT 513 GR KPWSD WG++NDLTLFNPAPVT Sbjct: 492 GRRKPWSDHWGLYNDLTLFNPAPVT 516 >ref|YP_001770104.1| galactarate dehydratase [Methylobacterium sp. 4-46] gb|ACA17670.1| galactarate dehydratase [Methylobacterium sp. 4-46] Length = 530 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/507 (75%), Positives = 436/507 (85%) Query: 7 AQEQPRYIKLNERDNVAIVVNDFGLPAGSRFASGLTLRAFVPQGHKTALEDIAEGAPIIR 66 A + PR I+L+ DNVAIVVN FGLPAG+ GLTLR FVPQGHK AL DI EGAP+ R Sbjct: 24 AGDLPRTIRLHPDDNVAIVVNAFGLPAGTALPDGLTLREFVPQGHKVALADIPEGAPVRR 83 Query: 67 YGEVIGTALSPILAGEWVDEARIRMPDAPPLDQLEVATAVPPALPPLEGFTFEGYRNPDG 126 YGEVIGTAL I G WV+E+R+R P AP LD L +AT VP LPPL+G+TFEGYRNPDG Sbjct: 84 YGEVIGTALRDISRGAWVEESRVRTPPAPALDALALATRVPAPLPPLDGYTFEGYRNPDG 143 Query: 127 SVGTKNILGISSSVQCVKGTMEYAVKRIRAELLPKYPNVDDVVPLTHAYGCGVAITAPDA 186 SVGT+NIL IS+SVQCV GT++ AV+RIR ELLP+YPNVDDVV LTHAYGCGVAI AP+A Sbjct: 144 SVGTRNILAISTSVQCVAGTLDVAVRRIREELLPRYPNVDDVVGLTHAYGCGVAINAPEA 203 Query: 187 VVPIRTLQNLALNPNFGGEILVVGLGCEKLAPERLVPEGVGDAIVRMQDEAFDGFGAIVD 246 V+PIRTLQ+LA NPNFGGE++VVGLGCEKL ERL+P+G G+ +VR+QDE GFG +++ Sbjct: 204 VIPIRTLQSLAQNPNFGGEVMVVGLGCEKLVSERLLPDGQGEGVVRLQDERHQGFGMMLE 263 Query: 247 AIMTQAEARLKVLNTRKRETCPAADLVIGLQCGGSDAFSGVTANPAVGFAADLLVRAGAT 306 +IM A ARL+VLN R+RETCPA+DLV+GLQCGGSDAFSGVTANPA+G+ ADLLVR GAT Sbjct: 264 SIMAMARARLEVLNRRRRETCPASDLVVGLQCGGSDAFSGVTANPALGYCADLLVRCGAT 323 Query: 307 VMFSEVTEVRDAIALLTRRAVNEDVGRALIREMEWYDAYLARGGADRSANTTPGNKKGGL 366 VMFSEVTEVRDAI LLT RA E+V RALIREM WYDAYLARG ADRSAN +PGNKKGGL Sbjct: 324 VMFSEVTEVRDAIHLLTPRAETEEVARALIREMAWYDAYLARGQADRSANPSPGNKKGGL 383 Query: 367 ANIVEKSLGSIVKSGSGPIAGVLSPGEKARQKGMLFAATPASDFICGTLQLASGMTLQVF 426 IVEK+LGS+ KSG+ I GVL+PGE+ R+KG++FAATPASDF+CGTLQLASGMTLQVF Sbjct: 384 NTIVEKALGSVAKSGTSAIRGVLAPGERVRRKGLIFAATPASDFVCGTLQLASGMTLQVF 443 Query: 427 TTGRGTPYGLAAAPVIKVATRSELARRWKDLIDFDAGCIATGEKTIEETGWDLFRLILDV 486 +TGRGTPYGLA APVIKVATR+ELA RW DLID DAG IATGE TIEE GW+LFRLILDV Sbjct: 444 STGRGTPYGLAEAPVIKVATRTELAERWSDLIDLDAGRIATGEATIEEMGWELFRLILDV 503 Query: 487 ASGRTKPWSDRWGIHNDLTLFNPAPVT 513 ASGRTKPWSDRWG++NDLTLFNPAPVT Sbjct: 504 ASGRTKPWSDRWGLYNDLTLFNPAPVT 530