BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0130.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767051.1| ABC transporter permease protein [Bradyrhizobiu... 494 e-138 ref|YP_002550396.1| ABC transporter membrane spanning protein [A... 186 3e-45 ref|ZP_03523407.1| amino acid ABC transporter permease [Rhizobiu... 185 9e-45 ref|YP_472926.1| amino acid ABC transporter permease [Rhizobium ... 184 2e-44 gb|EGE56941.1| amino acid ABC transporter permease [Rhizobium et... 184 2e-44 >ref|NP_767051.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45676.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/291 (84%), Positives = 263/291 (90%), Gaps = 1/291 (0%) Query: 1 MKRYGTLG-TVGWQVLICAVVLSVWQWGYDLRTRLPWLVPDLLDPYFISKPSMIFDNFLI 59 M+R G T+ WQ+ ICA LS+WQWGYDL RLPWLVPDLLDPYF+S+PS IF++FLI Sbjct: 1 MRRARNAGRTLAWQMAICACFLSIWQWGYDLHGRLPWLVPDLLDPYFVSRPSDIFEHFLI 60 Query: 60 QSCLTSKLGAFNSWFNGDFGKCLARNENNLWAATAITLKNTFFGFVTGVVSGFVAGLILG 119 SCL SKLG FN WFNG+F +C+AR+ENNLW ATA+TLKNTFFGF TGV SGF AGL+LG Sbjct: 61 LSCLKSKLGVFNGWFNGEFARCMARSENNLWIATAVTLKNTFFGFATGVSSGFAAGLVLG 120 Query: 120 RSDRLSAIFQPFITAVNSIPRIALAPIIVLAFGIGDMSKIVTSWIVVVFLVFFNTFEGAR 179 RSDRLSAIFQPFITAVNSIPRIALAPIIVLAFGIGD SK+VTSWIVVVFLVFFNTFEGAR Sbjct: 121 RSDRLSAIFQPFITAVNSIPRIALAPIIVLAFGIGDTSKVVTSWIVVVFLVFFNTFEGAR 180 Query: 180 SIDEGFTNAARLLGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGI 239 SIDEGF NAARLLGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGI Sbjct: 181 SIDEGFVNAARLLGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGI 240 Query: 240 GRLIIESEARGEASGMMVAVVVLMLVGVVLSAIIWRLQAYLLRWQRQRSAE 290 GRLIIESEAR EASGMMVAV+VLMLVGV LSA+IWRLQAYLLRWQ+ AE Sbjct: 241 GRLIIESEARAEASGMMVAVIVLMLVGVALSALIWRLQAYLLRWQQHNLAE 291 >ref|YP_002550396.1| ABC transporter membrane spanning protein [Agrobacterium vitis S4] gb|ACM37385.1| ABC transporter membrane spanning protein [Agrobacterium vitis S4] Length = 295 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 163/279 (58%), Gaps = 28/279 (10%) Query: 12 WQVLICAVVLSVWQWGYDLRTRLPWLVPDLLDPYFISKPSMIFDNFLIQSCLTSKLGAFN 71 WQ+ I VL++WQ D W+ DP+F + P + + ++ Sbjct: 43 WQIAILVGVLTLWQVASDQT----WI-----DPFFYASPYAVVERI------------YD 81 Query: 72 SWFNGDFGKCLARNENNLWAATAITLKNTFFGFVTGVVSGFVAGLILGRSDRLSAIFQPF 131 NG E +LW IT++ GF +G ++G V G+ LGR+ LS IF + Sbjct: 82 WAVNG-------TTEGSLWYNLGITMEEALIGFFSGSIAGVVVGIGLGRNKLLSDIFSVY 134 Query: 132 ITAVNSIPRIALAPIIVLAFGIGDMSKIVTSWIVVVFLVFFNTFEGARSIDEGFTNAARL 191 I A+NSIPR+ LAPI ++ G+G SK+ ++I+V F+VF N F+G R D+ AR+ Sbjct: 135 IKAINSIPRVVLAPIFIMIMGLGLASKVALAFIMVFFVVFANAFQGVREADQDMIANARI 194 Query: 192 LGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGIGRLIIESEARGE 251 LGAS+WQ+T+ V++PS M+W+FASL + FA+IG IVGEF+GA GIG+LI ++ + Sbjct: 195 LGASDWQVTKAVIVPSAMSWIFASLHVSFGFAIIGAIVGEFVGARYGIGQLISIAKGTFD 254 Query: 252 ASGMMVAVVVLMLVGVVLSAIIWRLQAYLLRWQRQRSAE 290 A+GM A+V++M++ + ++ ++ L +W+ Q+S + Sbjct: 255 AAGMFAAIVLVMIITLAAEYVMTLIENRLAKWRPQQSLD 293 >ref|ZP_03523407.1| amino acid ABC transporter permease [Rhizobium etli GR56] Length = 570 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 168/290 (57%), Gaps = 29/290 (10%) Query: 1 MKRYGTLGTVGWQVLICAVVLSVWQWGYDLRTRLPWLVPDLLDPYFISKPSMIFDNFLIQ 60 M R TL WQ+ I V+ +W+ L + + W+ DP+F S PS + + Sbjct: 308 MHRRNTLVRF-WQIAILVFVIGMWE----LASNMQWI-----DPFFYSSPSGVLERLYEW 357 Query: 61 SCLTSKLGAFNSWFNGDFGKCLARNENNLWAATAITLKNTFFGFVTGVVSGFVAGLILGR 120 + + G+ W+N LW +T++ GF G ++G G+ LGR Sbjct: 358 ATEGTTEGSL--WYN-------------LW----VTMEEALIGFFAGSITGVFVGIGLGR 398 Query: 121 SDRLSAIFQPFITAVNSIPRIALAPIIVLAFGIGDMSKIVTSWIVVVFLVFFNTFEGARS 180 + LS IF +I A+NSIPR+ LAPI ++ G+G SK+ ++I+V F+VF N F+G R Sbjct: 399 NRFLSDIFSVYIKAINSIPRVVLAPIFIMIMGLGLPSKVALAFIMVFFVVFANAFQGVRE 458 Query: 181 IDEGFTNAARLLGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGIG 240 D AR+LGAS+WQ+TRTVVIPS M+W+FASL + FA+IG IVGEF+GA GIG Sbjct: 459 ADRNMIANARILGASDWQVTRTVVIPSAMSWIFASLHVSFGFAIIGAIVGEFVGARFGIG 518 Query: 241 RLIIESEARGEASGMMVAVVVLMLVGVVLSAIIWRLQAYLLRWQRQRSAE 290 +LI ++ +A+GM A++++M+V +V I+ ++ L +W+ Q+ + Sbjct: 519 QLISIAKGTFDAAGMFAAILLVMVVTLVAEYIMTLIENRLAKWRPQQQLD 568 >ref|YP_472926.1| amino acid ABC transporter permease [Rhizobium etli CFN 42] gb|ABC94199.1| probable amino acid ABC transporter, permease protein [Rhizobium etli CFN 42] Length = 293 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/290 (37%), Positives = 168/290 (57%), Gaps = 29/290 (10%) Query: 1 MKRYGTLGTVGWQVLICAVVLSVWQWGYDLRTRLPWLVPDLLDPYFISKPSMIFDNFLIQ 60 M+R TL WQ+ I V+ +W +L + + W+ DP+F S PS + + Sbjct: 31 MRRRNTLVRF-WQIAILVFVIGMW----ELASNMQWI-----DPFFYSSPSGVLERLYEW 80 Query: 61 SCLTSKLGAFNSWFNGDFGKCLARNENNLWAATAITLKNTFFGFVTGVVSGFVAGLILGR 120 + + G+ W+N LW +T++ GF G ++G G+ LGR Sbjct: 81 ATEGTTEGSL--WYN-------------LW----VTMEEALIGFFAGSITGVFVGIGLGR 121 Query: 121 SDRLSAIFQPFITAVNSIPRIALAPIIVLAFGIGDMSKIVTSWIVVVFLVFFNTFEGARS 180 + LS IF +I A+NSIPR+ LAPI ++ G+G SK+ ++I+V F+VF N F+G R Sbjct: 122 NRFLSDIFSVYIKAINSIPRVVLAPIFIMIMGLGLPSKVALAFIMVFFVVFANAFQGVRE 181 Query: 181 IDEGFTNAARLLGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGIG 240 D AR+LGAS+WQ+TRTVVIPS M+W+FASL + FA+IG IVGEF+GA GIG Sbjct: 182 ADRNMIANARILGASDWQVTRTVVIPSAMSWIFASLHVSFGFAIIGAIVGEFVGARFGIG 241 Query: 241 RLIIESEARGEASGMMVAVVVLMLVGVVLSAIIWRLQAYLLRWQRQRSAE 290 +LI ++ +A+GM A++++M+V + I+ ++ L +W+ Q+ + Sbjct: 242 QLISIAKGTFDAAGMFAAILLVMVVTLFAEYIMTLIENRLAKWRPQQHLD 291 >gb|EGE56941.1| amino acid ABC transporter permease [Rhizobium etli CNPAF512] Length = 293 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 164/279 (58%), Gaps = 28/279 (10%) Query: 12 WQVLICAVVLSVWQWGYDLRTRLPWLVPDLLDPYFISKPSMIFDNFLIQSCLTSKLGAFN 71 WQ+ I V+ +W+ L + + W+ DP+F S PS + + + + G+ Sbjct: 41 WQIAILVFVIGMWE----LSSNMNWI-----DPFFYSSPSGVLERLYEWATEGTTEGSL- 90 Query: 72 SWFNGDFGKCLARNENNLWAATAITLKNTFFGFVTGVVSGFVAGLILGRSDRLSAIFQPF 131 W+N LW +T++ GF G ++G G+ LGR+ LS IF + Sbjct: 91 -WYN-------------LW----VTMEEALIGFFAGSITGVFVGIGLGRNRFLSDIFSVY 132 Query: 132 ITAVNSIPRIALAPIIVLAFGIGDMSKIVTSWIVVVFLVFFNTFEGARSIDEGFTNAARL 191 I A+NSIPR+ LAPI ++ G+G SK+ ++I+V F+VF N F+G R D AR+ Sbjct: 133 IKAINSIPRVVLAPIFIMIMGLGLPSKVALAFIMVFFVVFANAFQGVREADRNMIANARI 192 Query: 192 LGASEWQITRTVVIPSTMAWVFASLTPAISFALIGVIVGEFIGAERGIGRLIIESEARGE 251 LGAS+WQ+TRTVVIPS M+W+FASL + FA+IG IVGEF+GA GIG+LI ++ + Sbjct: 193 LGASDWQVTRTVVIPSAMSWIFASLHVSFGFAIIGAIVGEFVGARFGIGQLISIAKGTFD 252 Query: 252 ASGMMVAVVVLMLVGVVLSAIIWRLQAYLLRWQRQRSAE 290 A+GM A++++M+V +V I+ ++ L +W+ Q+ + Sbjct: 253 AAGMFAAILLVMVVTLVAEYIMTLVENRLAKWRPQQHLD 291