BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0126.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772349.1| hypothetical protein bll5709 [Bradyrhizobium ja... 513 e-143 ref|YP_568899.1| beta-lactamase [Rhodopseudomonas palustris BisB... 374 e-101 ref|YP_004110207.1| beta-lactamase [Rhodopseudomonas palustris D... 369 e-100 ref|YP_001990800.1| beta-lactamase [Rhodopseudomonas palustris T... 363 2e-98 ref|NP_946954.1| beta-lactamase [Rhodopseudomonas palustris CGA0... 363 2e-98 >ref|NP_772349.1| hypothetical protein bll5709 [Bradyrhizobium japonicum USDA 110] dbj|BAC50974.1| bll5709 [Bradyrhizobium japonicum USDA 110] Length = 446 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/309 (78%), Positives = 276/309 (89%), Gaps = 3/309 (0%) Query: 6 LTCAAVVAAVVLAAPAFSHTEGTYEIPAGAHFNSAKLARISEFFKNEVATGKIPGAIVLI 65 L C A+++ L A +F+ EGTYEIPAGAHFN KLA++SEFFKNEVATGKI GA VLI Sbjct: 28 LACGALMS---LGAMSFARAEGTYEIPAGAHFNQDKLAKVSEFFKNEVATGKIAGATVLI 84 Query: 66 QQHGKPVYHEAFGVQDVVSKVPITDKTIFRLASMSKSITAVVSMQLLQEGKYKLDDPVSK 125 QQHGKPVYHEAFGVQDVVSK PITDKTIFRL SMSK+IT+VV+++L+++GK KLDDPVS+ Sbjct: 85 QQHGKPVYHEAFGVQDVVSKAPITDKTIFRLFSMSKAITSVVAVRLIEDGKIKLDDPVSQ 144 Query: 126 YIPSFANVKVGVEKKAEDGTKTLELVPPKRPITILDLMTHTSGITYGFYGDSLVRKTYKE 185 YIPSFANVKVGVEKKA+DGTK+LELVPP RPIT+LDLM HTSGITYGFYGDSLVRK Y++ Sbjct: 145 YIPSFANVKVGVEKKADDGTKSLELVPPARPITVLDLMRHTSGITYGFYGDSLVRKAYRD 204 Query: 186 ANIYGGDFDLAEFAERIAKLPLHNQPGALWQYGHSTDILARVMEVTTGEKLSTIERERLL 245 ANIY GDFDLAEFAERIAKLPLHNQPGALWQYGHSTDILARVME+ G+ L IERE+LL Sbjct: 205 ANIYAGDFDLAEFAERIAKLPLHNQPGALWQYGHSTDILARVMEIAAGKPLIEIEREKLL 264 Query: 246 DPLGMKDTGFFVTDPEKQKLMAEPMPNDSDFRVGRVNDPTKVKKWESASGGMVSTMADYS 305 DPLGM DTGFFVT PEKQKL+A+P+PND+DFRVGR+NDPT VKK + ASGGMV+TMADY Sbjct: 265 DPLGMVDTGFFVTAPEKQKLLAQPVPNDADFRVGRINDPTVVKKIQFASGGMVTTMADYE 324 Query: 306 RFAQMLXSA 314 RFAQML + Sbjct: 325 RFAQMLLNG 333 >ref|YP_568899.1| beta-lactamase [Rhodopseudomonas palustris BisB5] gb|ABE38998.1| beta-lactamase [Rhodopseudomonas palustris BisB5] Length = 431 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/306 (57%), Positives = 228/306 (74%) Query: 6 LTCAAVVAAVVLAAPAFSHTEGTYEIPAGAHFNSAKLARISEFFKNEVATGKIPGAIVLI 65 L A++A V AP + EGT+++P+GA F+ +KL RI FFK +A GKIPGA+V I Sbjct: 10 LFAGALIALAVSQAPNSALAEGTFDLPSGAQFSPSKLERIDAFFKTIIAEGKIPGALVYI 69 Query: 66 QQHGKPVYHEAFGVQDVVSKVPITDKTIFRLASMSKSITAVVSMQLLQEGKYKLDDPVSK 125 +Q GKP+YH+ FGV+DV ++ P+TD TIFRLAS++K T+ M L+ +GK KLDDPVSK Sbjct: 70 EQRGKPIYHKHFGVRDVATQAPVTDDTIFRLASLTKPFTSFAVMMLVDDGKLKLDDPVSK 129 Query: 126 YIPSFANVKVGVEKKAEDGTKTLELVPPKRPITILDLMTHTSGITYGFYGDSLVRKTYKE 185 YIP+FA+VKVGVEKK +DG K L+ P KRPI + DL+ HTSGITYGFYGD+LVRK Sbjct: 130 YIPAFADVKVGVEKKRDDGEKYLDFEPVKRPIKVSDLLLHTSGITYGFYGDTLVRKAIAA 189 Query: 186 ANIYGGDFDLAEFAERIAKLPLHNQPGALWQYGHSTDILARVMEVTTGEKLSTIERERLL 245 A IY GD AEFAERIAKLPL QPG LW YG+S ++L+RV+EV +G+ T ++ERL Sbjct: 190 AKIYDGDPSNAEFAERIAKLPLQEQPGTLWDYGNSYEVLSRVVEVASGKSFYTYQKERLF 249 Query: 246 DPLGMKDTGFFVTDPEKQKLMAEPMPNDSDFRVGRVNDPTKVKKWESASGGMVSTMADYS 305 DPLGMKDT ++++ E++ MA+PMPND+DFRVGR + P VKKWES GG+ ST +D Sbjct: 250 DPLGMKDTRYYLSTDEQKARMAQPMPNDADFRVGRPSRPDIVKKWESGGGGLTSTPSDVI 309 Query: 306 RFAQML 311 RF +ML Sbjct: 310 RFVRML 315 >ref|YP_004110207.1| beta-lactamase [Rhodopseudomonas palustris DX-1] gb|ADU45474.1| beta-lactamase [Rhodopseudomonas palustris DX-1] Length = 426 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/298 (60%), Positives = 220/298 (73%), Gaps = 2/298 (0%) Query: 14 AVVLAAPAFSHTEGTYEIPAGAHFNSAKLARISEFFKNEVATGKIPGAIVLIQQHGKPVY 73 AV A+PA + T T+++P F+ KL RI EFF +A GKIPGAIV I++HGKPVY Sbjct: 15 AVTAASPAIAET--TFDLPPSVQFSDKKLERIDEFFNKIIAEGKIPGAIVYIERHGKPVY 72 Query: 74 HEAFGVQDVVSKVPITDKTIFRLASMSKSITAVVSMQLLQEGKYKLDDPVSKYIPSFANV 133 H+ FGV+DV +K P+TD TIFRLAS++K TA M L+ +GK KLDDPVSKYIP+FA+ Sbjct: 73 HKYFGVRDVATKQPMTDDTIFRLASLTKPFTAFAVMTLVDDGKIKLDDPVSKYIPAFADT 132 Query: 134 KVGVEKKAEDGTKTLELVPPKRPITILDLMTHTSGITYGFYGDSLVRKTYKEANIYGGDF 193 KVGVEKK EDG K L+ V PKRP+ I DL+ HTSGITYGFYGDSLVRKT A IY GD Sbjct: 133 KVGVEKKREDGEKYLDFVAPKRPVLISDLLLHTSGITYGFYGDSLVRKTIAAAKIYDGDP 192 Query: 194 DLAEFAERIAKLPLHNQPGALWQYGHSTDILARVMEVTTGEKLSTIERERLLDPLGMKDT 253 AEFAERIAKLPL QPG LW YG+S ++L RV+EV +G+ ++ERL DPLGMKDT Sbjct: 193 SNAEFAERIAKLPLQEQPGTLWDYGNSYEVLGRVIEVASGKSFYEYQKERLFDPLGMKDT 252 Query: 254 GFFVTDPEKQKLMAEPMPNDSDFRVGRVNDPTKVKKWESASGGMVSTMADYSRFAQML 311 +++T E++ MA+PMPND+DFRVGR + P VKKWES GG+ ST D RF +ML Sbjct: 253 RYYLTTDEQKARMAQPMPNDADFRVGRPSRPDIVKKWESGGGGLTSTPPDVIRFVRML 310 >ref|YP_001990800.1| beta-lactamase [Rhodopseudomonas palustris TIE-1] gb|ACF00325.1| beta-lactamase [Rhodopseudomonas palustris TIE-1] Length = 426 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/286 (60%), Positives = 213/286 (74%) Query: 26 EGTYEIPAGAHFNSAKLARISEFFKNEVATGKIPGAIVLIQQHGKPVYHEAFGVQDVVSK 85 E T+++P F+ KL RI EFF +A GKIPGAIV I++HGKPVYH+ FGV+DV +K Sbjct: 25 ETTFDLPPSVQFSDKKLERIDEFFNKIIAEGKIPGAIVYIERHGKPVYHKYFGVRDVATK 84 Query: 86 VPITDKTIFRLASMSKSITAVVSMQLLQEGKYKLDDPVSKYIPSFANVKVGVEKKAEDGT 145 P+TD TIFRLAS++K TA M L+ +GK KLDDPVSKYIP+FA+ KVGVEKK EDG Sbjct: 85 EPMTDDTIFRLASLTKPFTAFAVMTLVDDGKIKLDDPVSKYIPAFADTKVGVEKKREDGE 144 Query: 146 KTLELVPPKRPITILDLMTHTSGITYGFYGDSLVRKTYKEANIYGGDFDLAEFAERIAKL 205 K L+ V PKRPI + DL+ HTSGITYGFYGDSLVRKT A IY GD AEFAERIAKL Sbjct: 145 KYLDFVAPKRPILVSDLLLHTSGITYGFYGDSLVRKTIAAAKIYDGDPSNAEFAERIAKL 204 Query: 206 PLHNQPGALWQYGHSTDILARVMEVTTGEKLSTIERERLLDPLGMKDTGFFVTDPEKQKL 265 PL QPG LW YG+S ++L RV+EV +G+ ++ERL DPLGMKDT +++ E++ Sbjct: 205 PLQEQPGTLWDYGNSYEVLGRVIEVASGKSFYEYQKERLFDPLGMKDTRYYLATDEQKAR 264 Query: 266 MAEPMPNDSDFRVGRVNDPTKVKKWESASGGMVSTMADYSRFAQML 311 MA+PMPND+DFRVGR + P VKKWES GG+ ST +D RF +ML Sbjct: 265 MAQPMPNDADFRVGRPSRPDIVKKWESGGGGLTSTPSDVIRFVRML 310 >ref|NP_946954.1| beta-lactamase [Rhodopseudomonas palustris CGA009] emb|CAE27049.1| Beta-lactamase [Rhodopseudomonas palustris CGA009] Length = 426 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/286 (60%), Positives = 213/286 (74%) Query: 26 EGTYEIPAGAHFNSAKLARISEFFKNEVATGKIPGAIVLIQQHGKPVYHEAFGVQDVVSK 85 E T+++P F+ KL RI EFF +A GKIPGAIV I++HGKPVYH+ FGV+DV +K Sbjct: 25 ETTFDLPPSVQFSDKKLERIDEFFNKIIAEGKIPGAIVYIERHGKPVYHKYFGVRDVATK 84 Query: 86 VPITDKTIFRLASMSKSITAVVSMQLLQEGKYKLDDPVSKYIPSFANVKVGVEKKAEDGT 145 P+TD TIFRLAS++K TA M L+ +GK KLDDPVSKYIP+FA+ KVGVEKK EDG Sbjct: 85 EPMTDDTIFRLASLTKPFTAFAVMTLVDDGKIKLDDPVSKYIPAFADTKVGVEKKREDGE 144 Query: 146 KTLELVPPKRPITILDLMTHTSGITYGFYGDSLVRKTYKEANIYGGDFDLAEFAERIAKL 205 K L+ V PKRPI + DL+ HTSGITYGFYGDSLVRKT A IY GD AEFAERIAKL Sbjct: 145 KYLDFVAPKRPILVSDLLLHTSGITYGFYGDSLVRKTIAAAKIYDGDPSNAEFAERIAKL 204 Query: 206 PLHNQPGALWQYGHSTDILARVMEVTTGEKLSTIERERLLDPLGMKDTGFFVTDPEKQKL 265 PL QPG LW YG+S ++L RV+EV +G+ ++ERL DPLGMKDT +++ E++ Sbjct: 205 PLQEQPGTLWDYGNSYEVLGRVIEVASGKSFYEYQKERLFDPLGMKDTRYYLATDEQKAR 264 Query: 266 MAEPMPNDSDFRVGRVNDPTKVKKWESASGGMVSTMADYSRFAQML 311 MA+PMPND+DFRVGR + P VKKWES GG+ ST +D RF +ML Sbjct: 265 MAQPMPNDADFRVGRPSRPDIVKKWESGGGGLTSTPSDVIRFVRML 310