BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0120.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772354.1| hypothetical protein bll5714 [Bradyrhizobium ja... 637 0.0 ref|YP_001241276.1| hypothetical protein BBta_5396 [Bradyrhizobi... 521 e-146 ref|YP_001204837.1| hypothetical protein BRADO2790 [Bradyrhizobi... 494 e-137 ref|ZP_08630576.1| hypothetical protein CSIRO_3686 [Bradyrhizobi... 490 e-136 ref|YP_576917.1| low temperature requirement A [Nitrobacter hamb... 451 e-125 >ref|NP_772354.1| hypothetical protein bll5714 [Bradyrhizobium japonicum USDA 110] dbj|BAC50979.1| bll5714 [Bradyrhizobium japonicum USDA 110] Length = 398 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/390 (79%), Positives = 349/390 (89%) Query: 2 DNPRGAMFRVIVPNQHSRVTNAELFFDLVFVFAVTQLSHTLLHHFTPLGAVQVTLLFLAV 61 DNPRGAMFRVI+PNQ SRVTNAELFFDLVFVFAVTQ+SHTLLHHFTPLGAV+VTLLFLAV Sbjct: 5 DNPRGAMFRVILPNQPSRVTNAELFFDLVFVFAVTQVSHTLLHHFTPLGAVEVTLLFLAV 64 Query: 62 WWVWVYTTWVTNWLNPELTPVRLLLFVLMLGGLLLSTSIPTAFEGRGLWFAGTYAAMQVG 121 WWVWVYT WVTNWLNP+LTPVR+L+F++MLGGL+LST+IPTAF+GRGLWFA YA MQVG Sbjct: 65 WWVWVYTAWVTNWLNPDLTPVRILIFLMMLGGLVLSTTIPTAFDGRGLWFAIAYATMQVG 124 Query: 122 RTAFWLLATPRRRTAVRHNAIRILTWLSCSAVLWILGGFAEHETRMWLWIAALTIEYVAP 181 RTAFWL ATPR RTAVRHNAIRIL WLS SA+ WILGG A E R+W WI ALTIEY++P Sbjct: 125 RTAFWLFATPRHRTAVRHNAIRILVWLSGSAIFWILGGLAHGEERLWFWIVALTIEYISP 184 Query: 182 AARFWTPGLGFSSIEAWSVEGGHMAERCAGFIIIALGEAIVVDGATFAELTWTPENMAAF 241 A RFW P LGFSS+EAW+VEGGHMAERCAGFIIIALGEA+VV+GATFAEL WT +N+ AF Sbjct: 185 AVRFWVPKLGFSSVEAWAVEGGHMAERCAGFIIIALGEAVVVNGATFAELEWTADNILAF 244 Query: 242 VSALVGSIAMWWIYFHKGAEAGSDMISKSEESGRVARIAYTYLHMPIVGGIILTAVADEL 301 VSAL G+IAMWWIYFHKGAEAGS+ ISKS ESGR+AR+AYTYLHMPIV GIILTAV+DEL Sbjct: 245 VSALTGAIAMWWIYFHKGAEAGSERISKSAESGRLARLAYTYLHMPIVAGIILTAVSDEL 304 Query: 302 VLKHPSGHSDLNTIVSSVGGPMLFLVGTILFKYVIRNFLQLSHGVGIVALAITAYFAREM 361 VLKHP+GHSD+ TIVS++GGP++FLVGTILFK+ IR FLQLSHG+GI+ LA +FA E+ Sbjct: 305 VLKHPTGHSDVRTIVSTIGGPLVFLVGTILFKHAIRGFLQLSHGIGIILLAALWWFAAEL 364 Query: 362 SPLVLSIVTTAIMIVVAAWESISLRSTGEE 391 SPL LS+ TT IMIVVA WES+SL S EE Sbjct: 365 SPLWLSVATTVIMIVVAVWESVSLGSKPEE 394 >ref|YP_001241276.1| hypothetical protein BBta_5396 [Bradyrhizobium sp. BTAi1] gb|ABQ37370.1| putative membrane protein of unknown function with LtrA domain (Low temperature requirement A protein ) [Bradyrhizobium sp. BTAi1] Length = 400 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 267/390 (68%), Positives = 318/390 (81%) Query: 1 VDNPRGAMFRVIVPNQHSRVTNAELFFDLVFVFAVTQLSHTLLHHFTPLGAVQVTLLFLA 60 V+NPRGA+FRV+ PN+HSRVT ELFFDLVFV+AVTQ+SH L+ HFTPLGA Q +LFLA Sbjct: 3 VENPRGALFRVLEPNRHSRVTFVELFFDLVFVYAVTQISHYLIGHFTPLGAAQTAMLFLA 62 Query: 61 VWWVWVYTTWVTNWLNPELTPVRLLLFVLMLGGLLLSTSIPTAFEGRGLWFAGTYAAMQV 120 VWWVWVYT WVTNWL+PE VR LLF LML GL+LS SIP AFE RGLWFA YAAMQV Sbjct: 63 VWWVWVYTAWVTNWLDPEKALVRGLLFALMLAGLVLSMSIPRAFEDRGLWFAIAYAAMQV 122 Query: 121 GRTAFWLLATPRRRTAVRHNAIRILTWLSCSAVLWILGGFAEHETRMWLWIAALTIEYVA 180 GRTAFWL ATP +R+AVR NA RIL WL SAVLW+LGG AE +RM LW AALT+EY++ Sbjct: 123 GRTAFWLTATPPQRSAVRRNAARILAWLCASAVLWLLGGLAEGTSRMALWGAALTLEYIS 182 Query: 181 PAARFWTPGLGFSSIEAWSVEGGHMAERCAGFIIIALGEAIVVDGATFAELTWTPENMAA 240 PA RFW PGLG S++E W VEGGHMAERCA FIIIALGE+IVV GATFAEL W+ N+AA Sbjct: 183 PAVRFWVPGLGSSTVEDWMVEGGHMAERCALFIIIALGESIVVTGATFAELDWSGANIAA 242 Query: 241 FVSALVGSIAMWWIYFHKGAEAGSDMISKSEESGRVARIAYTYLHMPIVGGIILTAVADE 300 F SA +G++AMW +YF++GAEAGS+MIS+S +SG VAR AYTYLHMPIV GII++AVADE Sbjct: 243 FASAFIGTVAMWAVYFNRGAEAGSEMISRSTQSGLVARSAYTYLHMPIVAGIIVSAVADE 302 Query: 301 LVLKHPSGHSDLNTIVSSVGGPMLFLVGTILFKYVIRNFLQLSHGVGIVALAITAYFARE 360 +VLKHP GHSD T+ ++GGP +FLVGTILFK R FLQLSHG G++AL + A Sbjct: 303 IVLKHPLGHSDFKTVAVTIGGPFVFLVGTILFKREARGFLQLSHGAGLLALVGLGWLAPA 362 Query: 361 MSPLVLSIVTTAIMIVVAAWESISLRSTGE 390 +SPL+LS +T+A++ +VA WE++SLR+ E Sbjct: 363 LSPLLLSALTSALLAIVALWETLSLRAKPE 392 >ref|YP_001204837.1| hypothetical protein BRADO2790 [Bradyrhizobium sp. ORS 278] emb|CAL76600.1| conserved hypothetical protein; putative membrane protein; putative LtrA domain (Low temperature requirement A protein ) [Bradyrhizobium sp. ORS 278] Length = 401 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 264/390 (67%), Positives = 308/390 (78%) Query: 1 VDNPRGAMFRVIVPNQHSRVTNAELFFDLVFVFAVTQLSHTLLHHFTPLGAVQVTLLFLA 60 V+NPRGA+FRVI PNQH RVT ELFFDLVFV+AVTQ+SH LL HFT LGA Q +LFLA Sbjct: 3 VNNPRGALFRVIEPNQHGRVTFVELFFDLVFVYAVTQISHYLLGHFTLLGAFQTGMLFLA 62 Query: 61 VWWVWVYTTWVTNWLNPELTPVRLLLFVLMLGGLLLSTSIPTAFEGRGLWFAGTYAAMQV 120 VWWVWVYT WVTNWL+PE VR LLF LML GL+LS SIP AFE RGLWFA YA MQV Sbjct: 63 VWWVWVYTAWVTNWLDPEKALVRALLFALMLAGLMLSMSIPRAFEDRGLWFALAYAVMQV 122 Query: 121 GRTAFWLLATPRRRTAVRHNAIRILTWLSCSAVLWILGGFAEHETRMWLWIAALTIEYVA 180 GRTAFW ATP +R AVR NA RIL+WLS SA+LW+LGGFA+ TRM LW AAL +EYV+ Sbjct: 123 GRTAFWWTATPPQRAAVRRNAARILSWLSTSAMLWLLGGFADGSTRMALWSAALALEYVS 182 Query: 181 PAARFWTPGLGFSSIEAWSVEGGHMAERCAGFIIIALGEAIVVDGATFAELTWTPENMAA 240 PA RFW P LG S++E W VEGGHMAERCAGFIIIALGE+IVV GATFA+L WT N AA Sbjct: 183 PAVRFWVPRLGASTVEDWMVEGGHMAERCAGFIIIALGESIVVTGATFADLEWTGANAAA 242 Query: 241 FVSALVGSIAMWWIYFHKGAEAGSDMISKSEESGRVARIAYTYLHMPIVGGIILTAVADE 300 F A VG++AMW +YF++GAEAG++MIS+S +SG VAR AYTYLHMPIV GII++AV DE Sbjct: 243 FACAFVGTVAMWAVYFNRGAEAGAEMISQSRQSGLVARSAYTYLHMPIVAGIIVSAVGDE 302 Query: 301 LVLKHPSGHSDLNTIVSSVGGPMLFLVGTILFKYVIRNFLQLSHGVGIVALAITAYFARE 360 +VLKHP GH+D +GGP +FL GTILFK +R FLQLSHG G++ L +FA Sbjct: 303 IVLKHPLGHTDFTAAAVLIGGPFVFLAGTILFKREVRGFLQLSHGAGLLGLIGLVWFATA 362 Query: 361 MSPLVLSIVTTAIMIVVAAWESISLRSTGE 390 +SPLVLS +T+A++ +VA WE +SLRS E Sbjct: 363 LSPLVLSALTSALLAIVALWEVLSLRSKPE 392 >ref|ZP_08630576.1| hypothetical protein CSIRO_3686 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06955.1| hypothetical protein CSIRO_3686 [Bradyrhizobiaceae bacterium SG-6C] Length = 390 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/386 (61%), Positives = 292/386 (75%) Query: 5 RGAMFRVIVPNQHSRVTNAELFFDLVFVFAVTQLSHTLLHHFTPLGAVQVTLLFLAVWWV 64 G++ R P+QH RVT ELFFDLVFVFA+TQ+SHTLL HFTPLG +Q T+LFLAVWWV Sbjct: 4 NGSLLRTRAPHQHHRVTYVELFFDLVFVFAITQISHTLLAHFTPLGVLQTTILFLAVWWV 63 Query: 65 WVYTTWVTNWLNPELTPVRLLLFVLMLGGLLLSTSIPTAFEGRGLWFAGTYAAMQVGRTA 124 W+YT+W+TNWL+PE TPVR++LF LM+ GLLLSTSIP AFE RGL FA + MQVGR+ Sbjct: 64 WIYTSWITNWLDPERTPVRVMLFGLMIAGLLLSTSIPKAFESRGLAFAVAFVVMQVGRSF 123 Query: 125 FWLLATPRRRTAVRHNAIRILTWLSCSAVLWILGGFAEHETRMWLWIAALTIEYVAPAAR 184 + + PR + R N +RI WL+CS V WI GG A+ +TR+ LWI A+ IEY P R Sbjct: 124 YTYCSIPRSQPGWRMNLLRITCWLACSGVFWIAGGLADGQTRLMLWIFAVGIEYCGPLFR 183 Query: 185 FWTPGLGFSSIEAWSVEGGHMAERCAGFIIIALGEAIVVDGATFAELTWTPENMAAFVSA 244 FW PGLG + W VEGGHMAERC FIIIALGE+IVV GATFA WT +A FV A Sbjct: 184 FWFPGLGATPYADWDVEGGHMAERCGLFIIIALGESIVVTGATFASAAWTAPTIAGFVVA 243 Query: 245 LVGSIAMWWIYFHKGAEAGSDMISKSEESGRVARIAYTYLHMPIVGGIILTAVADELVLK 304 L+GSIAMWW+YFH GAEAG++ IS SEE+GR+AR+AYTYLH+PIV GI+++AV DEL+L Sbjct: 244 LIGSIAMWWVYFHIGAEAGAEQISHSEETGRLARLAYTYLHLPIVAGIVVSAVGDELLLA 303 Query: 305 HPSGHSDLNTIVSSVGGPMLFLVGTILFKYVIRNFLQLSHGVGIVALAITAYFAREMSPL 364 HP GH+D TI+S +GGP+LFL+GTILFK IR QLSH GI L + FA +SPL Sbjct: 304 HPDGHADAKTILSMIGGPLLFLIGTILFKRSIRGIFQLSHLAGIGLLIVLIPFAHSLSPL 363 Query: 365 VLSIVTTAIMIVVAAWESISLRSTGE 390 +LS TT +M++VAAWE+ISL S+ E Sbjct: 364 MLSTATTIVMLIVAAWEAISLGSSAE 389 >ref|YP_576917.1| low temperature requirement A [Nitrobacter hamburgensis X14] gb|ABE62457.1| low temperature requirement A [Nitrobacter hamburgensis X14] Length = 377 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/372 (61%), Positives = 278/372 (74%) Query: 20 VTNAELFFDLVFVFAVTQLSHTLLHHFTPLGAVQVTLLFLAVWWVWVYTTWVTNWLNPEL 79 +T ELFFDLVFVFA+TQ+SH+LL HFTPLG +QVT+L LAVWWVWV+T+W+TNWL+PE Sbjct: 1 MTYVELFFDLVFVFAITQISHSLLAHFTPLGVLQVTMLMLAVWWVWVFTSWITNWLDPEQ 60 Query: 80 TPVRLLLFVLMLGGLLLSTSIPTAFEGRGLWFAGTYAAMQVGRTAFWLLATPRRRTAVRH 139 PVR++LF LM+ GLLLSTSIP AFE RGL FA Y+ MQVGRT F+L + P R+ Sbjct: 61 APVRVMLFGLMIAGLLLSTSIPKAFESRGLTFAAAYSVMQVGRTLFFLWSVPTSAVGQRN 120 Query: 140 NAIRILTWLSCSAVLWILGGFAEHETRMWLWIAALTIEYVAPAARFWTPGLGFSSIEAWS 199 N IRIL WL AV WI GG AE R+ LW+ AL IEY PA RF TP LG S+ W Sbjct: 121 NVIRILFWLGTGAVFWIGGGLAEGNIRIGLWLVALAIEYAGPAMRFRTPRLGASTTRDWD 180 Query: 200 VEGGHMAERCAGFIIIALGEAIVVDGATFAELTWTPENMAAFVSALVGSIAMWWIYFHKG 259 VEGGHMAERCA FIIIALGE+IVV GATFAE WT + AF+ AL+GSIAMWW+YFH G Sbjct: 181 VEGGHMAERCALFIIIALGESIVVTGATFAETAWTATTVCAFLVALLGSIAMWWVYFHIG 240 Query: 260 AEAGSDMISKSEESGRVARIAYTYLHMPIVGGIILTAVADELVLKHPSGHSDLNTIVSSV 319 AEAGS+ IS+S ++GR+AR+AYTYLH+P+V GII++AV DEL+L HP GH I+S V Sbjct: 241 AEAGSEHISQSADTGRLARLAYTYLHLPVVAGIIVSAVGDELLLAHPGGHVGGREILSIV 300 Query: 320 GGPMLFLVGTILFKYVIRNFLQLSHGVGIVALAITAYFAREMSPLVLSIVTTAIMIVVAA 379 GGP+L+L+GTILFK+ IR QLSH VGI L A ++ L L+ V AI+++VAA Sbjct: 301 GGPLLYLIGTILFKHAIRGIFQLSHLVGIGLLIALIPLASGLTLLSLAAVVAAILMMVAA 360 Query: 380 WESISLRSTGEE 391 WE+ISL S + Sbjct: 361 WEAISLGSGSRQ 372