BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0104.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772361.1| hypothetical protein blr5721 [Bradyrhizobium ja... 491 e-137 ref|YP_001976619.1| permease [Rhizobium etli CIAT 652] >gi|19069... 257 1e-66 ref|YP_002973915.1| hypothetical protein Rleg_0065 [Rhizobium le... 255 5e-66 ref|YP_004279555.1| permease protein [Agrobacterium sp. H13-3] >... 254 9e-66 gb|EGP57726.1| hypothetical protein Agau_C100025 [Agrobacterium ... 251 7e-65 >ref|NP_772361.1| hypothetical protein blr5721 [Bradyrhizobium japonicum USDA 110] dbj|BAC50986.1| blr5721 [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/297 (83%), Positives = 269/297 (90%) Query: 5 SAPGARGWRDYALLLALACCWSSTYPLTKIGLGSIPPVTFISARSLVAAAFLLIVLRVRG 64 +A GAR WRDYALL ALACCWSSTYPL K+ L +IPP+TFISARSL+AAAFL +L +RG Sbjct: 23 AATGARSWRDYALLFALACCWSSTYPLAKLALDTIPPITFISARSLIAAAFLFAILWIRG 82 Query: 65 IRIPTDIKAWKLFAFQQTINSTIPFLVITWAQLYVPASNTVVLASTTPIFAFLITWAITR 124 +RIPTD KAWKLFA QQ INST PFLVITW+Q YVPASNTVVLASTTPIFAFLIT ITR Sbjct: 83 VRIPTDAKAWKLFATQQLINSTFPFLVITWSQQYVPASNTVVLASTTPIFAFLITSLITR 142 Query: 125 HEPASLLKLLGAILGLAGTVAIIGLDALSGFGKEIFAEIAILLATVSFACATIFGLRLSD 184 HEPA+LLKL GAILGLAGTVAI+GLDAL GFG+EI AEIAILLAT+SFACATIFGLRLSD Sbjct: 143 HEPATLLKLAGAILGLAGTVAIVGLDALGGFGREIVAEIAILLATISFACATIFGLRLSD 202 Query: 185 YDPMVVAAGSLLFGGTVLLPVALIVDHPWTLHPTPQALVATVVMGIFSSAFGLMLFYMCL 244 YDPMVVAAGSLLFGG +LLP +LI+D PWTLHPT QA+VAT+VMGI SSA GLMLFY+CL Sbjct: 203 YDPMVVAAGSLLFGGLILLPPSLIIDQPWTLHPTFQAIVATIVMGIVSSALGLMLFYVCL 262 Query: 245 TRLGTLTTNAQGYLRIPIGVALSVILLGESVPSNLALGLLLVMAGVAAMTVPAEAVK 301 RLGTLTTNAQGYLRIPIGV LSV+LLGESVPSNLALGLLLVMAGVAAMTVPAE +K Sbjct: 263 GRLGTLTTNAQGYLRIPIGVGLSVVLLGESVPSNLALGLLLVMAGVAAMTVPAERLK 319 >ref|YP_001976619.1| permease [Rhizobium etli CIAT 652] gb|ACE89441.1| putative permease protein [Rhizobium etli CIAT 652] Length = 304 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 191/286 (66%) Query: 13 RDYALLLALACCWSSTYPLTKIGLGSIPPVTFISARSLVAAAFLLIVLRVRGIRIPTDIK 72 R+ LLL LA W S+Y KIG+ +IPPVT I+AR+L+A A LL VLR R +R+P D Sbjct: 11 RELVLLLVLATLWGSSYTFIKIGVETIPPVTLIAARTLIAGAILLAVLRHRRVRLPRDPA 70 Query: 73 AWKLFAFQQTINSTIPFLVITWAQLYVPASNTVVLASTTPIFAFLITWAITRHEPASLLK 132 W+ F Q +NS IPF +I WA+ V A V+L S TPIF FL+T +TRHEPA+L K Sbjct: 71 IWRRFFVQACLNSVIPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVVMTRHEPATLRK 130 Query: 133 LLGAILGLAGTVAIIGLDALSGFGKEIFAEIAILLATVSFACATIFGLRLSDYDPMVVAA 192 L G + GLAG +IG++AL G G+ + A++AI+LAT+ +A A IF DP V AA Sbjct: 131 LFGVVAGLAGICLVIGVEALGGLGESLIAQLAIILATICYAGAAIFSKNFKGLDPAVPAA 190 Query: 193 GSLLFGGTVLLPVALIVDHPWTLHPTPQALVATVVMGIFSSAFGLMLFYMCLTRLGTLTT 252 GSL+ G +L+PV+L+VD PWTL P+ ++++A + + FS+A +++ + LG++ T Sbjct: 191 GSLISGAVILMPVSLLVDRPWTLDPSAESMLALLALSAFSTALAFAIYFRLVQTLGSVGT 250 Query: 253 NAQGYLRIPIGVALSVILLGESVPSNLALGLLLVMAGVAAMTVPAE 298 +Q YLR+PIGVA+ ++ LGE + +GL+ V+ GV AMT+PA Sbjct: 251 TSQAYLRVPIGVAIGIVFLGERLSPTAWIGLICVILGVIAMTIPAR 296 >ref|YP_002973915.1| hypothetical protein Rleg_0065 [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54376.1| protein of unknown function DUF6 transmembrane [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 307 Score = 255 bits (652), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 191/286 (66%) Query: 13 RDYALLLALACCWSSTYPLTKIGLGSIPPVTFISARSLVAAAFLLIVLRVRGIRIPTDIK 72 R+ LLL LA W S+Y KIG+ +IPP+T I+AR+L+A LL VLR R +R+P D+ Sbjct: 13 RELFLLLVLATLWGSSYSFIKIGVETIPPITLIAARTLIAGGILLAVLRHRRVRLPRDLA 72 Query: 73 AWKLFAFQQTINSTIPFLVITWAQLYVPASNTVVLASTTPIFAFLITWAITRHEPASLLK 132 W+ F Q +NS +PF +I WA+ V A V+L S TPIF FL+T ITRHE +L + Sbjct: 73 TWRRFFVQACLNSVVPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVLITRHEQVTLRR 132 Query: 133 LLGAILGLAGTVAIIGLDALSGFGKEIFAEIAILLATVSFACATIFGLRLSDYDPMVVAA 192 L G + GLAG +IG++AL G G+ + A++AI+LAT+ +A A IF DP V AA Sbjct: 133 LFGVMAGLAGICLVIGVEALGGLGESLMAQLAIILATICYAGAAIFSKNFKGLDPAVPAA 192 Query: 193 GSLLFGGTVLLPVALIVDHPWTLHPTPQALVATVVMGIFSSAFGLMLFYMCLTRLGTLTT 252 GSL+ G VLLP++L+VD PW + P+P +++A + + FS+A ++++ + LG++ T Sbjct: 193 GSLISGAVVLLPMSLVVDRPWEIDPSPASMLALLALSAFSTALAFVIYFRLVQTLGSVGT 252 Query: 253 NAQGYLRIPIGVALSVILLGESVPSNLALGLLLVMAGVAAMTVPAE 298 AQ YLR+PIGVA+ ++ LGE + +GL+ V+AGVAAMT+PA Sbjct: 253 TAQAYLRVPIGVAIGIVFLGERLSPTAWIGLVCVIAGVAAMTIPAR 298 >ref|YP_004279555.1| permease protein [Agrobacterium sp. H13-3] gb|ADY65235.1| putative permease protein [Agrobacterium sp. H13-3] Length = 302 Score = 254 bits (650), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 128/271 (47%), Positives = 185/271 (68%) Query: 28 TYPLTKIGLGSIPPVTFISARSLVAAAFLLIVLRVRGIRIPTDIKAWKLFAFQQTINSTI 87 +Y KIG+ +IPP+TFI+AR+L+A LL V+R+RG+R+P D W+LF Q INS + Sbjct: 24 SYTFIKIGVETIPPLTFIAARTLIAGLLLLAVIRLRGLRLPRDFATWRLFFVQACINSVL 83 Query: 88 PFLVITWAQLYVPASNTVVLASTTPIFAFLITWAITRHEPASLLKLLGAILGLAGTVAII 147 PF +I WA+ + A V+L +TTPIF FL+T I RHE S KL G + G+ G II Sbjct: 84 PFTLIAWAEQSIDAGLAVILNATTPIFTFLLTALIIRHEQVSGRKLFGTVAGMTGVCLII 143 Query: 148 GLDALSGFGKEIFAEIAILLATVSFACATIFGLRLSDYDPMVVAAGSLLFGGTVLLPVAL 207 GLDAL+G G+ ++++IA+L A S+ACA IF DP++ AAGSL+ G +LLPV++ Sbjct: 144 GLDALNGAGEALWSQIAVLTAAFSYACAAIFSKNFRGLDPVMPAAGSLICGAVLLLPVSV 203 Query: 208 IVDHPWTLHPTPQALVATVVMGIFSSAFGLMLFYMCLTRLGTLTTNAQGYLRIPIGVALS 267 IVD PWTL P+P +L A V + +FS+A M+++ + LG++ T +Q YLR+PIGVA+ Sbjct: 204 IVDRPWTLSPSPASLTALVCLSVFSTALAFMVYFRLMQTLGSVGTTSQAYLRVPIGVAIG 263 Query: 268 VILLGESVPSNLALGLLLVMAGVAAMTVPAE 298 ++ LGE + +GL+ V+AGV AMT+P+ Sbjct: 264 MVFLGEVPTPAMWVGLVCVIAGVLAMTLPSR 294 >gb|EGP57726.1| hypothetical protein Agau_C100025 [Agrobacterium tumefaciens F2] Length = 302 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 125/271 (46%), Positives = 184/271 (67%) Query: 28 TYPLTKIGLGSIPPVTFISARSLVAAAFLLIVLRVRGIRIPTDIKAWKLFAFQQTINSTI 87 +Y KIG+ +IPP+TFI++R+L+A LL V+R+RG+R+P D W+LF Q INS + Sbjct: 24 SYTFIKIGVETIPPITFIASRTLIAGLLLLAVIRLRGLRLPRDFATWRLFFIQACINSVL 83 Query: 88 PFLVITWAQLYVPASNTVVLASTTPIFAFLITWAITRHEPASLLKLLGAILGLAGTVAII 147 PF +I WA+ + A V+L +TTPIF FL+T + RHE S KL G I G+ G II Sbjct: 84 PFTLIAWAEQSIDAGLAVILNATTPIFTFLLTALVIRHEQVSGRKLFGTIAGMTGVCLII 143 Query: 148 GLDALSGFGKEIFAEIAILLATVSFACATIFGLRLSDYDPMVVAAGSLLFGGTVLLPVAL 207 GLDAL G G+ ++ ++A+L+A S+ACA IF DP++ AAGS++ G +LLP++L Sbjct: 144 GLDALGGAGEALWGQLAMLIAAFSYACAAIFSKNFRGLDPIMPAAGSMICGAVLLLPLSL 203 Query: 208 IVDHPWTLHPTPQALVATVVMGIFSSAFGLMLFYMCLTRLGTLTTNAQGYLRIPIGVALS 267 IVD PWTL P+ +L A V + +FS+A M+++ + LG++ T +Q YLR+PIGVA+ Sbjct: 204 IVDRPWTLSPSAASLTALVCLSVFSTALAFMIYFRLMQTLGSVGTTSQAYLRVPIGVAIG 263 Query: 268 VILLGESVPSNLALGLLLVMAGVAAMTVPAE 298 ++ LGE S + +GL+ V+AGV AMT+P+ Sbjct: 264 MVFLGEVPTSAMWVGLVCVIAGVLAMTLPSR 294