BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0097.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772219.1| hypothetical protein bll5579 [Bradyrhizobium ja...    39   0.25 
ref|YP_001204993.1| hypothetical protein BRADO2949 [Bradyrhizobi...    35   2.7  
ref|YP_532797.1| hypothetical protein RPC_2932 [Rhodopseudomonas...    34   9.0  

>ref|NP_772219.1| hypothetical protein bll5579 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50844.1| bll5579 [Bradyrhizobium japonicum USDA 110]
          Length = 139

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query: 140 GYGGCYIVRRGVMTPYGWRVRPV 162
           GYGGCY+VR+ VMTP GWR R V
Sbjct: 113 GYGGCYVVRKRVMTPSGWRYRRV 135


>ref|YP_001204993.1| hypothetical protein BRADO2949 [Bradyrhizobium sp. ORS 278]
 emb|CAL76756.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 99

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 18/21 (85%)

Query: 142 GGCYIVRRGVMTPYGWRVRPV 162
           GGCY+V++ V T +GWR+RPV
Sbjct: 75  GGCYVVKKRVRTAHGWRLRPV 95


>ref|YP_532797.1| hypothetical protein RPC_2932 [Rhodopseudomonas palustris BisB18]
 gb|ABD88478.1| hypothetical protein RPC_2932 [Rhodopseudomonas palustris BisB18]
          Length = 81

 Score = 33.9 bits (76), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 124 PYYAGYGYGYDDGYGYGYGGCYIVRRGVMTPYGWRVRPV 162
           PYYAG  + Y  G  +  G CY +R+ VMT  GWR+R +
Sbjct: 40  PYYAG-TFRYGSGPDFSDGDCYPLRQRVMTRAGWRIRRI 77