BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0095.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629892.1| hypothetical protein CSIRO_2989 [Bradyrhizobi...   169   1e-40
ref|YP_577101.1| hypothetical protein Nham_1827 [Nitrobacter ham...   169   2e-40
ref|YP_318048.1| hypothetical protein Nwi_1435 [Nitrobacter wino...   166   1e-39
ref|ZP_07027043.1| Protein of unknown function DUF2497 [Afipia s...   159   2e-37
ref|YP_532438.1| hypothetical protein RPC_2569 [Rhodopseudomonas...   158   2e-37

>ref|ZP_08629892.1| hypothetical protein CSIRO_2989 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07261.1| hypothetical protein CSIRO_2989 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 249

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/135 (67%), Positives = 102/135 (75%), Gaps = 19/135 (14%)

Query: 1   VFELTDEMALPDPAAAPSFRKVEPQDDVEFTEA-------------RSRAPEPAREPPAI 47
           VFELT++MA+P+PA  P F K+EP DD+EF E              RS   EPARE    
Sbjct: 121 VFELTEQMAVPEPAPQPVFNKIEPDDDLEFAETPVAEIPAPRPTPPRSFEREPARE---- 176

Query: 48  ETAPMQQIISGTTMRAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLV 107
              P+QQI+SG+T+ AVESAFN+L NTVLSNNARTLEDLVKEMLRPMLKSWLDDNLP LV
Sbjct: 177 --TPVQQIMSGSTVSAVESAFNALQNTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPNLV 234

Query: 108 ERIVKAEIERVSRGR 122
           ERIVKAEIERVSRGR
Sbjct: 235 ERIVKAEIERVSRGR 249


>ref|YP_577101.1| hypothetical protein Nham_1827 [Nitrobacter hamburgensis X14]
 gb|ABE62641.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 234

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 105/127 (82%), Gaps = 6/127 (4%)

Query: 1   VFELTDEMALPDPAAAPSFRKVEPQDDVEFTE---ARSRAPEPAR-EPPAIETA-PMQQI 55
           VFELTDEMALP P  A +F+KVEPQDD+EF E   A +  P PA  + PA+  A P  QI
Sbjct: 108 VFELTDEMALPHPEKA-AFQKVEPQDDLEFAEMASAPATRPRPAAVDRPAVPNAVPAAQI 166

Query: 56  ISGTTMRAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEI 115
           +S +T+ AVE+AFNSLA+TVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEI
Sbjct: 167 LSHSTVSAVETAFNSLASTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEI 226

Query: 116 ERVSRGR 122
           ERVSRGR
Sbjct: 227 ERVSRGR 233


>ref|YP_318048.1| hypothetical protein Nwi_1435 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04696.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 239

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 104/126 (82%), Gaps = 5/126 (3%)

Query: 1   VFELTDEMALPDPAAAPSFRKVEPQDDVEFTEARSRA---PEPAREPPAI-ETAPMQQII 56
           VFELTDEMA+PD A   +F+K+EPQDD+EF EA   A   P+ A  PP+    AP  +I+
Sbjct: 114 VFELTDEMAVPD-ARQDAFQKIEPQDDLEFAEATQVAAASPDSAAIPPSNPNAAPAARIL 172

Query: 57  SGTTMRAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEIE 116
           S +T+ AVE+AFNSLA+TVL+NNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEIE
Sbjct: 173 SHSTVSAVETAFNSLASTVLTNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEIE 232

Query: 117 RVSRGR 122
           RVSRGR
Sbjct: 233 RVSRGR 238


>ref|ZP_07027043.1| Protein of unknown function DUF2497 [Afipia sp. 1NLS2]
 gb|EFI51886.1| Protein of unknown function DUF2497 [Afipia sp. 1NLS2]
          Length = 219

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 99/122 (81%), Gaps = 11/122 (9%)

Query: 1   VFELTDEMALPDPAAAPSFRKVEPQDDVEFTEARSRAPEPAREPPAIETAPMQQIISGTT 60
           VFELT++MA+P  AAA  F+KVEP DD+EFTE+    P PA +    E AP   ++S TT
Sbjct: 109 VFELTEQMAVP-AAAAEGFQKVEPHDDLEFTES----PPPASKA---EEAP---VLSATT 157

Query: 61  MRAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPGLVERIVKAEIERVSR 120
            +AVESAFNSLA TVLSNNARTLEDLVKEMLRPMLKSWLDDNLP LVERIVKAEIERV+R
Sbjct: 158 AKAVESAFNSLATTVLSNNARTLEDLVKEMLRPMLKSWLDDNLPTLVERIVKAEIERVAR 217

Query: 121 GR 122
           GR
Sbjct: 218 GR 219


>ref|YP_532438.1| hypothetical protein RPC_2569 [Rhodopseudomonas palustris BisB18]
 gb|ABD88119.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 253

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/143 (62%), Positives = 105/143 (73%), Gaps = 22/143 (15%)

Query: 1   VFELTDEMALPDPAAAPSFRKVEPQDDVEFTEA------RSRAPE--------------- 39
           VFELTDEMALPDPA  P+F+KVE + D+EF EA      +++AP                
Sbjct: 112 VFELTDEMALPDPAP-PAFQKVESEADLEFAEAIRAEREQAQAPSWSMPAPAPVMERPAP 170

Query: 40  PAREPPAIETAPMQQIISGTTMRAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWL 99
           P+ +P A + +   +++S +T  AVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWL
Sbjct: 171 PSYQPQAYQPSQQPEMLSRSTASAVESAFNSLANTVLSNNARTLEDLVKEMLRPMLKSWL 230

Query: 100 DDNLPGLVERIVKAEIERVSRGR 122
           DDNLP LVERIVKAEIERVSRGR
Sbjct: 231 DDNLPQLVERIVKAEIERVSRGR 253